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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008370 ID=TCONS_00008370|Name=TCONS_00008370|organism=Clytia hemisphaerica|type=transcript|length=1770bp
CAGAATGTTTGATTGTCACAGGGAAAATAAAACAGATTGTTTTGTCTTAA
GACTGTCTCGGATGGTCAAAAAGAGGTTTTAAAGAAAAGATTCATTCACT
gcttaatattttatttttgaaaatagagaCAACCAGCCAGGACCAGATTA
ACTCTTCGGAGTATTGTTGTATATGATTTCTAGTTATTAAGGGTTACAAG
GGACTCTAGTAGGAGGGATTCAAGgcccgtagtgcagtggtagagcatcc
ggctacggttcgcaaggttgtgggctCAACTCCCAGCTGGGTCAtgccaa
agattctcaaaatggtacttgataactctttgcttgatactcagcaatta
agagaaggctcaagggtaagtggagcaatccagagaGAAAGGCCCCCGAG
AAAGcgtggcaccctcccctaccttcgggtagatgtagctatcgaaagag
gagcatTCGGGTCATCTCCAACTatggtcgcagacttacttacttaggaG
GGGTTCACGGTAGGCAGTAGAGCAGAGTCGTCCTGTCGGAATTTTGGGAt
cgaccaaaaaaaaaatatatccgGTAAATTAAGTTCTTTGTTTTATGGGA
TACTAACTCCCGCCTCGACTGTGAAACAGGGAggagaaatattttacaat
agCTGTCTATAAAACAGATTCGACGTTCcaaatgtcatttttttccagtg
ATATTTTCGAAACGGTTCGAATTCGTCTACGTTGAAATAAAACAACCACA
TGGTACAACTTCTCTTTCAATGTTAACCGAATCTGGCGtatgaagaaaat
ataaaaaatggcATCAGTCGAATATCCAGCGCAGTAAAAAATATTCGCAA
TAAGAATGATCCAAGATGGTAGATAGTTTTCCCTGTTTGTTTTTAATAAT
CCaacgtggaagaaaatgaacATAATATTGAAAAAAGTCCAACAGATTAA
GTATGAGCAAACGATTAGTTTCGGAAGCTTGGTTGCATTTTTCATTCTCT
TTTTGTAAACTTCTGATTCCACACCATGTAAGGTTCGACTCCTTTCTTGG
ACTGTTTTGACAATAAACGCATAGCATGTCACATAAACTACCATCGTACA
TAAATCCAATATAGGCCAAAAATAAAGTGTCTTGGTGTTGTTAAATTGTT
CTTGAGTCTGTTGCGTTAACAGCAGTACTAGAGACACCATTATGGATACC
AATATGTTGAAAGCAAATCCAGTGTGCGTTGCCTTGGTGACTTTGTTTGA
ATCGTATTTGAAACTTAAATAGACGAACAAAGCTCTATCAATGGTCATTG
TCATCAAGATTAACAGCATTAGAGTTCCAAAGCCACCTGTTATAAAAGCA
CTCGCATGAAGTGGTAATCTACCATAATGTTTTATATGAGGGTAAATGAT
GTCGTGGGAGACCAATATAACTTCGATGGTGCTTAACCAGAGAAGATACT
TTCGCTGGATTCGTTGCCAGTGTGTTTTGAACGGTGATGTACGGAGAAAA
TAGATTCCAATAAGGTGGCAGAGAATTGGTATGGAGTGTGTTGTCAGAAA
TACAATTTTGTCAAATGAATTTGTCGTCATTTTTCATTACCAAAATATTG
AGGTATTTTGAGCATTATCTAATGCAAAGAAATAATCAGGTAAATCGTAG
ATAACTAACGATGATTAACAGGGTTTTTGCAGCTTAAGCTTTCACCACAA
ATACTTACCAATATTATTTACTTAACTTCCCAAAATAGGAAGGACTTCAA
CCCTGACTGGTAAACAGGAC Run BLAST on NCBI protein sequence of TCONS_00008370-protein >TCONS_00008370-protein ID=TCONS_00008370-protein|Name=TCONS_00008370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MTTNSFDKIVFLTTHSIPILCHLIGIYFLRTSPFKTHWQRIQRKYLLWLS
TIEVILVSHDIIYPHIKHYGRLPLHASAFITGGFGTLMLLILMTMTIDRA
LFVYLSFKYDSNKVTKATHTGFAFNILVSIMVSLVLLLTQQTQEQFNNTK
TLYFWPILDLCTMVVYVTCYAFIVKTVQERSRTLHGVESEVYKKRMKNAT
KLPKLIVCSYLICWTFFNIMFIFFHVGLLKTNRENYLPSWIILIANIFYC
AGYSTDAIFYIFFIRQIRLTLKEKLYHVVVLFQRRRIRTVSKISLEKNDI
WNVESVL Run BLAST on NCBI transcript from alignment at sc0000084:554399..556168 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008370 ID=TCONS_00008370|Name=TCONS_00008370|organism=Clytia hemisphaerica|type=transcript|length=1770bp|location=Sequence derived from alignment at sc0000084:554399..556168 (Clytia hemisphaerica)
GTCCTGTTTACCAGTCAGGGTTGAAGTCCTTCCTATTTTGGGAAGTTAAG
TAAATAATATTGGTAAGTATTTGTGGTGAAAGCTTAAGCTGCAAAAACCC
TGTTAATCATCGTTAGTTATCTACGATTTACCTGATTATTTCTTTGCATT
AGATAATGCTCAAAATACCTCAATATTTTGGTAATGAAAAATGACGACAA
ATTCATTTGACAAAATTGTATTTCTGACAACACACTCCATACCAATTCTC
TGCCACCTTATTGGAATCTATTTTCTCCGTACATCACCGTTCAAAACACA
CTGGCAACGAATCCAGCGAAAGTATCTTCTCTGGTTAAGCACCATCGAAG
TTATATTGGTCTCCCACGACATCATTTACCCTCATATAAAACATTATGGT
AGATTACCACTTCATGCGAGTGCTTTTATAACAGGTGGCTTTGGAACTCT
AATGCTGTTAATCTTGATGACAATGACCATTGATAGAGCTTTGTTCGTCT
ATTTAAGTTTCAAATACGATTCAAACAAAGTCACCAAGGCAACGCACACT
GGATTTGCTTTCAACATATTGGTATCCATAATGGTGTCTCTAGTACTGCT
GTTAACGCAACAGACTCAAGAACAATTTAACAACACCAAGACACTTTATT
TTTGGCCTATATTGGATTTATGTACGATGGTAGTTTATGTGACATGCTAT
GCGTTTATTGTCAAAACAGTCCAAGAAAGGAGTCGAACCTTACATGGTGT
GGAATCAGAAGTTTACAAAAAGAGAATGAAAAATGCAACCAAGCTTCCGA
AACTAATCGTTTGCTCATACTTAATCTGTTGGACTTTTTTCAATATTATg
ttcattttcttccacgttGGATTATTAAAAACAAACAGGGAAAACTATCT
ACCATCTTGGATCATTCTTATTGCGAATATTTTTTACTGCGCTGGATATT
CGACTGATgccattttttatattttcttcataCGCCAGATTCGGTTAACA
TTGAAAGAGAAGTTGTACCATGTGGTTGTTTTATTTCAACGTAGACGAAT
TCGAACCGTTTCGAAAATATcactggaaaaaaatgacatttgGAACGTCG
AATCTGTTTTATAGACAGctattgtaaaatatttctccTCCCTGTTTCAC
AGTCGAGGCGGGAGTTAGTATCCCATAAAACAAAGAACTTAATTTACcgg
atatattttttttttggtcgaTCCCAAAATTCCGACAGGACGACTCTGCT
CTACTGCCTACCGTGAACCCCtcctaagtaagtaagtctgcgaccatAGT
TGGAGATGACCCGAatgctcctctttcgatagctacatctacccgaaggt
aggggagggtgccacgCTTTCTCGGGGGCCTTTCtctctggattgctcca
cttacccttgagccttctcttaattgctgagtatcaagcaaagagttatc
aagtaccattttgagaatctttggcaTGACCCAGCTGGGAGTTGagccca
caaccttgcgaaccgtagccggatgctctaccactgcactacgggcCTTG
AATCCCTCCTACTAGAGTCCCTTGTAACCCTTAATAACTAGAAATCATAT
ACAACAATACTCCGAAGAGTTAATCTGGTCCTGGCTGGTTGtctctattt
tcaaaaataaaatattaagcAGTGAATGAATCTTTTCTTTAAAACCTCTT
TTTGACCATCCGAGACAGTCTTAAGACAAAACAATCTGTTTTATTTTCCC
TGTGACAATCAAACATTCTG Coding sequence (CDS) from alignment at sc0000084:554399..556168 >TCONS_00008370 ID=TCONS_00008370|Name=TCONS_00008370|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at sc0000084:554399..556168 (Clytia hemisphaerica)
ATGACGACAAATTCATTTGACAAAATTGTATTTCTGACAACACACTCCAT
ACCAATTCTCTGCCACCTTATTGGAATCTATTTTCTCCGTACATCACCGT
TCAAAACACACTGGCAACGAATCCAGCGAAAGTATCTTCTCTGGTTAAGC
ACCATCGAAGTTATATTGGTCTCCCACGACATCATTTACCCTCATATAAA
ACATTATGGTAGATTACCACTTCATGCGAGTGCTTTTATAACAGGTGGCT
TTGGAACTCTAATGCTGTTAATCTTGATGACAATGACCATTGATAGAGCT
TTGTTCGTCTATTTAAGTTTCAAATACGATTCAAACAAAGTCACCAAGGC
AACGCACACTGGATTTGCTTTCAACATATTGGTATCCATAATGGTGTCTC
TAGTACTGCTGTTAACGCAACAGACTCAAGAACAATTTAACAACACCAAG
ACACTTTATTTTTGGCCTATATTGGATTTATGTACGATGGTAGTTTATGT
GACATGCTATGCGTTTATTGTCAAAACAGTCCAAGAAAGGAGTCGAACCT
TACATGGTGTGGAATCAGAAGTTTACAAAAAGAGAATGAAAAATGCAACC
AAGCTTCCGAAACTAATCGTTTGCTCATACTTAATCTGTTGGACTTTTTT
CAATATTATgttcattttcttccacgttGGATTATTAAAAACAAACAGGG
AAAACTATCTACCATCTTGGATCATTCTTATTGCGAATATTTTTTACTGC
GCTGGATATTCGACTGATgccattttttatattttcttcataCGCCAGAT
TCGGTTAACATTGAAAGAGAAGTTGTACCATGTGGTTGTTTTATTTCAAC
GTAGACGAATTCGAACCGTTTCGAAAATATcactggaaaaaaatgacatt
tgGAACGTCGAATCTGTTTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008370-exon-sc0000084-1491911889:554399..556168 | TCONS_00008370-exon-sc0000084-1491911889:554399..556168 | Clytia hemisphaerica | exon |
| TCONS_00008370-exon-sc0000084-1510915933:554399..556168 | TCONS_00008370-exon-sc0000084-1510915933:554399..556168 | Clytia hemisphaerica | exon |
| TCONS_00008370-exon-sc0000084-1575043694:554399..556168 | TCONS_00008370-exon-sc0000084-1575043694:554399..556168 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:554399..556168 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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