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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008366 ID=TCONS_00008366|Name=TCONS_00008366|organism=Clytia hemisphaerica|type=transcript|length=1213bp
TAggtaaactaaaaatttaaactaaatAATTGACGAATCTACTGTTACCA
AGTTATGGAGATTCACTGGTTCACAAAAGCATTTGCTGTTTTGTTATTCT
CAGCTCAATACCCTGTTCCCACAATGCAAGGCAAATGCGTTCGTGCTTTG
CAAGGAAAATCATGTGAAGATGTTTACGCGTTGCTACAGAAACCACCCGG
TGCATCTGGTCCGCAAATTTGTCGTTTGAGGCGAATACAATTCATGAATA
GATGTGATAATTTGCTTTTGATCGAGAACGAGGAGCCCGAATGTAAACCT
AAATGTCATACACATTTGAATACTCTACACGATCGCTTAAGGAAAAATCT
GTTCTTCTGTGACTGTAAGGATAATTTAGATTGTATATGGTTTCAACAAC
GTACCTTTCGTTGTATGAATCAAACGTTAAAATATAAACTAAACTGTGAT
CTGGAGACAcagaaatgtaaacaaaacaaacaatgttttcaaaaatataa
aaactggTTCGAAAAATGTCAAGACATGTTTACAGGCTATAAATGTACAT
TCCGATGCCTTGATGCAGAGAGAGAGCTTCATGATGATCCCGTCGGGCGA
ACATTAGAAACTTGTGAGTGTGCTGGTAGTAAAAAGGAAGAGAAATTTTG
CCGCAGTGTTCGAAGGCGTCGAGATAAATTGTGTTTGAATCCGACACgtg
aagaaatttttgatgATACGCCGGTTAAAGAATCTTCGTCAAACAGTGTG
CCCAACAAGTGTAATATGTACAGTTTGACGGTTTTGCTCTTTGTTCCGTC
CATGGTGTTTCTATTCTAAGTAATGTTATAACTTGACCGGATAAGTTGAC
ACGAGattaaattttttcgatttcGCGAAAACTCACAGACATCGTAGGTT
TGCGAAATCAAACTAAACCAAGGTCACAATGATTGAAATTCGTGATATTC
TCGACGGAATGTTTTATTAGGAAGCGCCCATGAAAGACCGGGTGTTTGAC
ACTAATTTTACACAATTAAACTAGTGCCAAACACCCGggctacacgtttt
tctttttttattagaacacctaaaatttggctgagcctggatgtgcttat
ttttttcgCAGTTTTCagcataaaatgttcttaaatgcgttcttaatttt
tcagactactctaaatcggcaatatcatgcaaaaaaaGAGAacttaaaac
tggtaaaaattgg Run BLAST on NCBI protein sequence of TCONS_00008366-protein >TCONS_00008366-protein ID=TCONS_00008366-protein|Name=TCONS_00008366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MEIHWFTKAFAVLLFSAQYPVPTMQGKCVRALQGKSCEDVYALLQKPPGA
SGPQICRLRRIQFMNRCDNLLLIENEEPECKPKCHTHLNTLHDRLRKNLF
FCDCKDNLDCIWFQQRTFRCMNQTLKYKLNCDLETQKCKQNKQCFQKYKN
WFEKCQDMFTGYKCTFRCLDAERELHDDPVGRTLETCECAGSKKEEKFCR
SVRRRRDKLCLNPTREEIFDDTPVKESSSNSVPNKCNMYSLTVLLFVPSM
VFLF Run BLAST on NCBI transcript from alignment at sc0000084:431572..432784 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008366 ID=TCONS_00008366|Name=TCONS_00008366|organism=Clytia hemisphaerica|type=transcript|length=1213bp|location=Sequence derived from alignment at sc0000084:431572..432784 (Clytia hemisphaerica)
ccaatttttaccagttttaagtTCTCtttttttgcatgatattgccgatt
tagagtagtctgaaaaattaagaacgcatttaagaacattttatgctGAA
AACTGcgaaaaaaataagcacatccaggctcagccaaattttaggtgttc
taataaaaaaagaaaaacgtgtagccCGGGTGTTTGGCACTAGTTTAATT
GTGTAAAATTAGTGTCAAACACCCGGTCTTTCATGGGCGCTTCCTAATAA
AACATTCCGTCGAGAATATCACGAATTTCAATCATTGTGACCTTGGTTTA
GTTTGATTTCGCAAACCTACGATGTCTGTGAGTTTTCGCgaaatcgaaaa
aatttaatCTCGTGTCAACTTATCCGGTCAAGTTATAACATTACTTAGAA
TAGAAACACCATGGACGGAACAAAGAGCAAAACCGTCAAACTGTACATAT
TACACTTGTTGGGCACACTGTTTGACGAAGATTCTTTAACCGGCGTATca
tcaaaaatttcttcacGTGTCGGATTCAAACACAATTTATCTCGACGCCT
TCGAACACTGCGGCAAAATTTCTCTTCCTTTTTACTACCAGCACACTCAC
AAGTTTCTAATGTTCGCCCGACGGGATCATCATGAAGCTCTCTCTCTGCA
TCAAGGCATCGGAATGTACATTTATAGCCTGTAAACATGTCTTGACATTT
TTCGAAccagtttttatatttttgaaaacattgtttgttttgtttacatt
tctgTGTCTCCAGATCACAGTTTAGTTTATATTTTAACGTTTGATTCATA
CAACGAAAGGTACGTTGTTGAAACCATATACAATCTAAATTATCCTTACA
GTCACAGAAGAACAGATTTTTCCTTAAGCGATCGTGTAGAGTATTCAAAT
GTGTATGACATTTAGGTTTACATTCGGGCTCCTCGTTCTCGATCAAAAGC
AAATTATCACATCTATTCATGAATTGTATTCGCCTCAAACGACAAATTTG
CGGACCAGATGCACCGGGTGGTTTCTGTAGCAACGCGTAAACATCTTCAC
ATGATTTTCCTTGCAAAGCACGAACGCATTTGCCTTGCATTGTGGGAACA
GGGTATTGAGCTGAGAATAACAAAACAGCAAATGCTTTTGTGAACCAGTG
AATCTCCATAACTTGGTAACAGTAGATTCGTCAATTatttagtttaaatt
tttagtttaccTA Coding sequence (CDS) from alignment at sc0000084:431572..432784 >TCONS_00008366 ID=TCONS_00008366|Name=TCONS_00008366|organism=Clytia hemisphaerica|type=CDS|length=765bp|location=Sequence derived from alignment at sc0000084:431572..432784 (Clytia hemisphaerica)
TTAGAATAGAAACACCATGGACGGAACAAAGAGCAAAACCGTCAAACTGT
ACATATTACACTTGTTGGGCACACTGTTTGACGAAGATTCTTTAACCGGC
GTATcatcaaaaatttcttcacGTGTCGGATTCAAACACAATTTATCTCG
ACGCCTTCGAACACTGCGGCAAAATTTCTCTTCCTTTTTACTACCAGCAC
ACTCACAAGTTTCTAATGTTCGCCCGACGGGATCATCATGAAGCTCTCTC
TCTGCATCAAGGCATCGGAATGTACATTTATAGCCTGTAAACATGTCTTG
ACATTTTTCGAAccagtttttatatttttgaaaacattgtttgttttgtt
tacatttctgTGTCTCCAGATCACAGTTTAGTTTATATTTTAACGTTTGA
TTCATACAACGAAAGGTACGTTGTTGAAACCATATACAATCTAAATTATC
CTTACAGTCACAGAAGAACAGATTTTTCCTTAAGCGATCGTGTAGAGTAT
TCAAATGTGTATGACATTTAGGTTTACATTCGGGCTCCTCGTTCTCGATC
AAAAGCAAATTATCACATCTATTCATGAATTGTATTCGCCTCAAACGACA
AATTTGCGGACCAGATGCACCGGGTGGTTTCTGTAGCAACGCGTAAACAT
CTTCACATGATTTTCCTTGCAAAGCACGAACGCATTTGCCTTGCATTGTG
GGAACAGGGTATTGAGCTGAGAATAACAAAACAGCAAATGCTTTTGTGAA
CCAGTGAATCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008366-exon-sc0000084-1491911889:431572..432784 | TCONS_00008366-exon-sc0000084-1491911889:431572..432784 | Clytia hemisphaerica | exon |
| TCONS_00008366-exon-sc0000084-1510915933:431572..432784 | TCONS_00008366-exon-sc0000084-1510915933:431572..432784 | Clytia hemisphaerica | exon |
| TCONS_00008366-exon-sc0000084-1575043694:431572..432784 | TCONS_00008366-exon-sc0000084-1575043694:431572..432784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:431572..432784 . |
Blast
The following BLAST results are available for this feature:
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