TCONS_00008357 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008357
Unique NameTCONS_00008357
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008357 ID=TCONS_00008357|Name=TCONS_00008357|organism=Clytia hemisphaerica|type=transcript|length=401bp
GCCTAATAATTTGAATCGTTTGTATCTATGATATCTAAAAAGTATTAATT
TTATGTCTTATTTCTGGTGCTGGTCACgttttaaatacttttttagaatt
tcataTCATTTCCTCAGGACGGTTGTATTACACTCTAAGTCCAAGATTGC
TAGCGGAAGATGGTTGGTGCAATcacggacaaaaggttgtagacttttca
aaaatgcatgaaaaataaaactctgaaaacccatttttaaCTGAGCCaat
attgtttttattggatttggagAGTTTGGGTGACAAGTCCAGATGCCAAA
TCAACTCGACATTATTTGTGAAGGAAATGAGTTTTTGCAAAGTCTTCAGG
CTTTACTACTCTTCAATTTTTTCGAGAAGACATCTAATTAGACCATACTT
G
Run BLAST on NCBI

transcript from alignment at sc0000084:229332..229732

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008357 ID=TCONS_00008357|Name=TCONS_00008357|organism=Clytia hemisphaerica|type=transcript|length=401bp|location=Sequence derived from alignment at sc0000084:229332..229732 (Clytia hemisphaerica)
CAAGTATGGTCTAATTAGATGTCTTCTCGAAAAAATTGAAGAGTAGTAAA
GCCTGAAGACTTTGCAAAAACTCATTTCCTTCACAAATAATGTCGAGTTG
ATTTGGCATCTGGACTTGTCACCCAAACTctccaaatccaataaaaacaa
tattGGCTCAGttaaaaatgggttttcagagttttatttttcatgcattt
ttgaaaagtctacaaccttttgtccgtgATTGCACCAACCATCTTCCGCT
AGCAATCTTGGACTTAGAGTGTAATACAACCGTCCTGAGGAAATGAtatg
aaattctaaaaaagtatttaaaacGTGACCAGCACCAGAAATAAGACATA
AAATTAATACTTTTTAGATATCATAGATACAAACGATTCAAATTATTAGG
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004686XLOC_004686Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008357-exon-sc0000084-1491911889:229332..229732TCONS_00008357-exon-sc0000084-1491911889:229332..229732Clytia hemisphaericaexon
TCONS_00008357-exon-sc0000084-1510915933:229332..229732TCONS_00008357-exon-sc0000084-1510915933:229332..229732Clytia hemisphaericaexon
TCONS_00008357-exon-sc0000084-1575043694:229332..229732TCONS_00008357-exon-sc0000084-1575043694:229332..229732Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:229332..229732 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.360379	0.209217	0.204686	0.249186	0.39382	0.475127	1.11202	2.73653	3.66458	0.936034	2.09206	0.983131	3.31822	0.524621	0.1126	0	0.284354	0.196425	0.616634	0.178656	0	0	0.192616	0.39678	0.885292	0.50674	1.89282	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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