TCONS_00008356 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008356
Unique NameTCONS_00008356
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008356 ID=TCONS_00008356|Name=TCONS_00008356|organism=Clytia hemisphaerica|type=transcript|length=485bp
AACCCGGACCTCTAGAGACTCCATTTCGTCCCCAAACATTTGGAACGCTG
ATTGAGCCAGCTTGCGGTgcaagatcaaagaatcactgTAATCTCCCATA
ATAATGTCTTTAGATCCACGGGAATAAACAACATCACCAACATAGAGTGG
TAGCCTATCAGCATATCTCTTTGTGATGCAAACCTTCTTAGCTAGGTCAT
AATCTGTGATGACAATAAAGGGCTTATCGGCCATCCATAGGGTGAACATT
GTTCCGTATTCTTTTGATAACTTGTCCATAGCTAAATGAATATCTTTCCG
GAGTAAATGTAAATTTCCGATTATCGGTAATGGAAATGGTCCGGGTGGGT
ATTTTCTTATGATGTAACTCTTGTACGCTAACCATATTACGGTTAGGAAG
GCTAGAGTAGTGATGATCATTTCGTTTTGGttctaaaagaaaatatttgg
aatgtcttataaaccttactccttaactcgaacaa
Run BLAST on NCBI

protein sequence of TCONS_00008356-protein

>TCONS_00008356-protein ID=TCONS_00008356-protein|Name=TCONS_00008356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MIITTLAFLTVIWLAYKSYIIRKYPPGPFPLPIIGNLHLLRKDIHLAMDK
LSKEYGTMFTLWMADKPFIVITDYDLAKKVCITKRYADRLPLYVGDVVYS
RGSKDIIMGDYSDSLILHRKLAQSAFQMFGDEMESLEVRV
Run BLAST on NCBI

transcript from alignment at sc0000084:206039..206523

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008356 ID=TCONS_00008356|Name=TCONS_00008356|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at sc0000084:206039..206523 (Clytia hemisphaerica)
ttgttcgagttaaggagtaaggtttataagacattccaaatattttcttt
tagaaCCAAAACGAAATGATCATCACTACTCTAGCCTTCCTAACCGTAAT
ATGGTTAGCGTACAAGAGTTACATCATAAGAAAATACCCACCCGGACCAT
TTCCATTACCGATAATCGGAAATTTACATTTACTCCGGAAAGATATTCAT
TTAGCTATGGACAAGTTATCAAAAGAATACGGAACAATGTTCACCCTATG
GATGGCCGATAAGCCCTTTATTGTCATCACAGATTATGACCTAGCTAAGA
AGGTTTGCATCACAAAGAGATATGCTGATAGGCTACCACTCTATGTTGGT
GATGTTGTTTATTCCCGTGGATCTAAAGACATTATTATGGGAGATTAcag
tgattctttgatcttgcACCGCAAGCTGGCTCAATCAGCGTTCCAAATGT
TTGGGGACGAAATGGAGTCTCTAGAGGTCCGGGTT

Coding sequence (CDS) from alignment at sc0000084:206039..206523

>TCONS_00008356 ID=TCONS_00008356|Name=TCONS_00008356|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000084:206039..206523 (Clytia hemisphaerica)
ATGATCATCACTACTCTAGCCTTCCTAACCGTAATATGGTTAGCGTACAA
GAGTTACATCATAAGAAAATACCCACCCGGACCATTTCCATTACCGATAA
TCGGAAATTTACATTTACTCCGGAAAGATATTCATTTAGCTATGGACAAG
TTATCAAAAGAATACGGAACAATGTTCACCCTATGGATGGCCGATAAGCC
CTTTATTGTCATCACAGATTATGACCTAGCTAAGAAGGTTTGCATCACAA
AGAGATATGCTGATAGGCTACCACTCTATGTTGGTGATGTTGTTTATTCC
CGTGGATCTAAAGACATTATTATGGGAGATTAcagtgattctttgatctt
gcACCGCAAGCTGGCTCAATCAGCGTTCCAAATGTTTGGGGACGAAATGG
AGTCTCTAGAGGTCCGGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004685XLOC_004685Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008356-exon-sc0000084-1491911889:206039..206523TCONS_00008356-exon-sc0000084-1491911889:206039..206523Clytia hemisphaericaexon
TCONS_00008356-exon-sc0000084-1510915933:206039..206523TCONS_00008356-exon-sc0000084-1510915933:206039..206523Clytia hemisphaericaexon
TCONS_00008356-exon-sc0000084-1575043694:206039..206523TCONS_00008356-exon-sc0000084-1575043694:206039..206523Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008356-proteinTCONS_00008356-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:206039..206523 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.173347	0	5.13912	6.82811	13.1917	10.8057	3.46516	5.33787	17.0537	14.5037	0.378693	1.14144	0.846809	0.960639	6.9582	18.3116	0.19824	0.236914	1.17126	2.83086	0.512902	0.862197	0	0.188107	0	0.14536
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001128Cyt_P450
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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