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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008352 ID=TCONS_00008352|Name=TCONS_00008352|organism=Clytia hemisphaerica|type=transcript|length=845bp
CAAATACAGCAAGATGAAAATCACAGCCATACATTGAAGAATTTCACCAG
GAAATTTAAACCACggtttgaaaacatttttcagtttttgaaacAGAGTT
AACTGTGActgatttgaaatatttttcctttgtagaagatttttcaaata
caGGATTTGATGTGTATCTACGACGCTTTTCTCGTTCGTTGGAAGTTCAT
AACATCCTGTTTTGAAGCATGTGTATAAGCGATGTCCGAAACCGAACAAG
ATGACAGCAAGAAAAGTAAAACTAGGCACCAAAATTATTGCAATGTTTCG
TTGCAAGGTAGCTTTCAAATTACAGTCATCGTCATAGTCAAACTGTAGTC
CGAGATAAATAATCTCCCAAACAGTAAATCCGATTCCTACAACTGACGAA
ACCAGTAAATGCGGAGAGGAAATCAAAGCAAAAAACGGGAAAGCTAAAAA
CCCATTCAAAGTTGCTAACAAGATCGTTGAGAAAAATGAACACATGTTAT
ATTCTGGTGCGGAGCCTGATGATATGCTTGAGCAAAGCGCTTTCTCAAAA
GTTTTATCGGTATCTCCGAAGATCATGTTAAAAACACGGAGCGATAGATG
ACCAAAcactaatgacgtcatcaatcgaTTTCGGTCATTGTCTTGCAGAA
ACAGGAATGGTGCTTGTGCTGTCAATTTCCCTTTCTTAACTCGCGAGTAA
ATCTGCATGATAATCAAAATCAGCGTCGGTATCAAGAAGGCTAACACCGG
TACAGCGGTATTAGAGACAGCAGTTGACTGGCAAGACAttattttgtcga
atttgtGACCGAACTTATTTCTTTAACCAGACCACCACTTTCTCC Run BLAST on NCBI protein sequence of TCONS_00008352-protein >TCONS_00008352-protein ID=TCONS_00008352-protein|Name=TCONS_00008352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MSCQSTAVSNTAVPVLAFLIPTLILIIMQIYSRVKKGKLTAQAPFLFLQD
NDRNRLMTSLVFGHLSLRVFNMIFGDTDKTFEKALCSSISSGSAPEYNMC
SFFSTILLATLNGFLAFPFFALISSPHLLVSSVVGIGFTVWEIIYLGLQF
DYDDDCNLKATLQRNIAIILVPSFTFLAVILFGFGHRLYTCFKTGCYELP
TNEKSVVDTHQILYLKNLLQRKNISNQSQLTLFQKLKNVFKPWFKFPGEI
LQCMAVIFILLYL Run BLAST on NCBI transcript from alignment at sc0000084:27898..28742 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008352 ID=TCONS_00008352|Name=TCONS_00008352|organism=Clytia hemisphaerica|type=transcript|length=845bp|location=Sequence derived from alignment at sc0000084:27898..28742 (Clytia hemisphaerica)
GGAGAAAGTGGTGGTCTGGTTAAAGAAATAAGTTCGGTCacaaattcgac
aaaataaTGTCTTGCCAGTCAACTGCTGTCTCTAATACCGCTGTACCGGT
GTTAGCCTTCTTGATACCGACGCTGATTTTGATTATCATGCAGATTTACT
CGCGAGTTAAGAAAGGGAAATTGACAGCACAAGCACCATTCCTGTTTCTG
CAAGACAATGACCGAAAtcgattgatgacgtcattagtgTTTGGTCATCT
ATCGCTCCGTGTTTTTAACATGATCTTCGGAGATACCGATAAAACTTTTG
AGAAAGCGCTTTGCTCAAGCATATCATCAGGCTCCGCACCAGAATATAAC
ATGTGTTCATTTTTCTCAACGATCTTGTTAGCAACTTTGAATGGGTTTTT
AGCTTTCCCGTTTTTTGCTTTGATTTCCTCTCCGCATTTACTGGTTTCGT
CAGTTGTAGGAATCGGATTTACTGTTTGGGAGATTATTTATCTCGGACTA
CAGTTTGACTATGACGATGACTGTAATTTGAAAGCTACCTTGCAACGAAA
CATTGCAATAATTTTGGTGCCTAGTTTTACTTTTCTTGCTGTCATCTTGT
TCGGTTTCGGACATCGCTTATACACATGCTTCAAAACAGGATGTTATGAA
CTTCCAACGAACGAGAAAAGCGTCGTAGATACACATCAAATCCtgtattt
gaaaaatcttctacaaaggaaaaatatttcaaatcagTCACAGTTAACTC
TgtttcaaaaactgaaaaatgttttcaaaccGTGGTTTAAATTTCCTGGT
GAAATTCTTCAATGTATGGCTGTGATTTTCATCTTGCTGTATTTG Coding sequence (CDS) from alignment at sc0000084:27898..28742 >TCONS_00008352 ID=TCONS_00008352|Name=TCONS_00008352|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at sc0000084:27898..28742 (Clytia hemisphaerica)
aTGTCTTGCCAGTCAACTGCTGTCTCTAATACCGCTGTACCGGTGTTAGC
CTTCTTGATACCGACGCTGATTTTGATTATCATGCAGATTTACTCGCGAG
TTAAGAAAGGGAAATTGACAGCACAAGCACCATTCCTGTTTCTGCAAGAC
AATGACCGAAAtcgattgatgacgtcattagtgTTTGGTCATCTATCGCT
CCGTGTTTTTAACATGATCTTCGGAGATACCGATAAAACTTTTGAGAAAG
CGCTTTGCTCAAGCATATCATCAGGCTCCGCACCAGAATATAACATGTGT
TCATTTTTCTCAACGATCTTGTTAGCAACTTTGAATGGGTTTTTAGCTTT
CCCGTTTTTTGCTTTGATTTCCTCTCCGCATTTACTGGTTTCGTCAGTTG
TAGGAATCGGATTTACTGTTTGGGAGATTATTTATCTCGGACTACAGTTT
GACTATGACGATGACTGTAATTTGAAAGCTACCTTGCAACGAAACATTGC
AATAATTTTGGTGCCTAGTTTTACTTTTCTTGCTGTCATCTTGTTCGGTT
TCGGACATCGCTTATACACATGCTTCAAAACAGGATGTTATGAACTTCCA
ACGAACGAGAAAAGCGTCGTAGATACACATCAAATCCtgtatttgaaaaa
tcttctacaaaggaaaaatatttcaaatcagTCACAGTTAACTCTgtttc
aaaaactgaaaaatgttttcaaaccGTGGTTTAAATTTCCTGGTGAAATT
CTTCAATGTATGGCTGTGATTTTCATCTTGCTGTATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008352-exon-sc0000084-1491911889:27898..28742 | TCONS_00008352-exon-sc0000084-1491911889:27898..28742 | Clytia hemisphaerica | exon |
| TCONS_00008352-exon-sc0000084-1510915933:27898..28742 | TCONS_00008352-exon-sc0000084-1510915933:27898..28742 | Clytia hemisphaerica | exon |
| TCONS_00008352-exon-sc0000084-1575043694:27898..28742 | TCONS_00008352-exon-sc0000084-1575043694:27898..28742 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:27898..28742 . |
Blast
The following BLAST results are available for this feature:
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