|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008335 ID=TCONS_00008335|Name=TCONS_00008335|organism=Clytia hemisphaerica|type=transcript|length=2416bpRun BLAST on NCBI protein sequence of TCONS_00008335-protein >TCONS_00008335-protein ID=TCONS_00008335-protein|Name=TCONS_00008335-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp MMKSVSRYREFTGPTPHSVAILAKPPSKVPAEHLILERRRIEDLREKSIARun BLAST on NCBI transcript from alignment at sc0000084:557175..575586- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008335 ID=TCONS_00008335|Name=TCONS_00008335|organism=Clytia hemisphaerica|type=transcript|length=18412bp|location=Sequence derived from alignment at sc0000084:557175..575586- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000084:557175..575586- >TCONS_00008335 ID=TCONS_00008335|Name=TCONS_00008335|organism=Clytia hemisphaerica|type=CDS|length=16962bp|location=Sequence derived from alignment at sc0000084:557175..575586- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008335 vs. Swiss-Prot (Human)
Match: CFA53 (Cilia- and flagella-associated protein 53 OS=Homo sapiens GN=CFAP53 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 6.237e-17 Identity = 126/388 (32.47%), Postives = 225/388 (57.99%), Query Frame = 3
Query: 75 REFTGPTPHSVAILAKPPSKVPAXXXXXXXXXXXXXXXKSIADTKNNKQAFFKSQWEKTTDRQIQKNRIKREVEKNLSYANMIXXXXXXXXXXXXXXXXXXYIHELEMKEETTEHRQQXXXXXXXXXXXXXXXXXXXFVALKMDQKFRKECEELRSEQSKQLRDEIFRDREHQIQIKQDRKIRDAESERFYAQLWEQDRIAKADREELETQEQMDRNRSTLDVLNLQRNAVEAQRXXXXXXXXXXXXWLXXXXXXXXXXXXXXXXXXXXXXXXXXRARDISLXXXXXXXXXXXXXXIALDMKMLGKILEDSKAQDTEDSNKKKNMRDEM---QRFMH-YVDRTRRADEHRERELEAHINQEVENQWERKDVRKRMEKEARKALMQNVM 1226
RE GPTP V + +KPP AEH + RR +A K++++ K++W++ D +I + ++ ++ + + +E RR+KLRE L EE +Y E+++K+ET E ++ RMRE+ K LKE+ EKERQ+FVA K+DQ+FR+ CEELR E + ++ +R+ QI ++ + E+ +++LWE+DR+AK RE E + Q + +T LN Q +++AQR+ + +KE EA ++ K+E E + +K+ ++ R +L+ + + +E ++E L+MK++ + L+D + E+++KKK R++M Q+ H Y+ + R ++ +E+E + + ++ + KD R+EKEAR+ L+ VM
Sbjct: 11 REVKGPTPKVVIVRSKPPKGQGAEHHLERIRRSHQKHNAILASIKSSERDRLKAEWDQHNDCKILDSLVRARIKDAVQGFIINIEERRNKLRELLALEENEYFTEMQLKKETIEEKKDRMREKTKLLKEKNEKERQDFVAEKLDQQFRERCEELRVELLSIHQKKVCEERKAQIAFNEELSRQKLVEEQMFSKLWEEDRLAKEKREAQEARRQKELMENTRLGLNAQITSIKAQRQATQLLKEEEARLVESNNAQIKHENEQDMLKKQKAKQETRTILQKALQERIEHIQQEYRDEQDLNMKLVQRALQDLQ----EEADKKKQKREDMIREQKIYHKYLAQRREEEKAQEKEFDRILEEDKAKKLAEKDKELRLEKEARRQLVDEVM 394 The following BLAST results are available for this feature:
BLAST of TCONS_00008335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.