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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008334 ID=TCONS_00008334|Name=TCONS_00008334|organism=Clytia hemisphaerica|type=transcript|length=2226bpRun BLAST on NCBI protein sequence of TCONS_00008334-protein >TCONS_00008334-protein ID=TCONS_00008334-protein|Name=TCONS_00008334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=546bp MFKYSIIVVTILNFLVLVTCGPAEQYRGHQVVEMIAKDVATANLLRAYVDRun BLAST on NCBI transcript from alignment at sc0000084:510170..526728- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008334 ID=TCONS_00008334|Name=TCONS_00008334|organism=Clytia hemisphaerica|type=transcript|length=16559bp|location=Sequence derived from alignment at sc0000084:510170..526728- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000084:510170..526728- >TCONS_00008334 ID=TCONS_00008334|Name=TCONS_00008334|organism=Clytia hemisphaerica|type=CDS|length=14769bp|location=Sequence derived from alignment at sc0000084:510170..526728- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008334 vs. Swiss-Prot (Human)
Match: CBPA2 (Carboxypeptidase A2 OS=Homo sapiens GN=CPA2 PE=1 SV=3) HSP 1 Score: 197.593 bits (501), Expect = 1.927e-55 Identity = 129/428 (30.14%), Postives = 217/428 (50.70%), Query Frame = 3
Query: 372 EQYRGHQVVEMI-AKDVATANLLRAYVDNHNKDMDVWTLTPTA----CQVSVVGEQVDPLQKFCEENNIDFKVMIEDLEVAITEHMKRDAPTAIRSLTRSAETDEW-FSRPQQEQKPFNYEEYNRFDDIAKELYRLQCAYPDIVDVTQIGLSHEKRPLLLVRITQNVLGCSSKKKPVIWIDGGTHAREWISVATPMWILRELVTKFGKDDDVTNLLMENEIMLSPVFNPDGYEYTFTGARLWRKTRTPTKKTDCLGIDANRNWDTEQFGGAGTSDDPCSPIYPGEFPEQDPAVRGFAQVLRYIRPRLKTYWTMHSFSQFLLTPNSYKREKPPTFRIFGGPAFVFVTTIISKSNRVYGTG--NAIDFQNNLLTGLSLDYVHDALQIPYSYLLELPPSRQSPFGFALQKTEIDSVSKEVFCSMLAALKRI 1631
E + G QV+E++ + + NLL+ H + +D W +PT V V V ++ F E I + +MIED++V + + E +E F+R ++ FN+ Y+ ++I++E+ L +P +V IG S E RP+ +++ + + KP IW+D G HAREW++ AT +W ++V+ +GKD +T++L +I L PV NPDGY ++ T R+WRKTR+ + C+G+D NRNWD FGG G S +PCS Y G + V+ ++ ++K + T+HS+SQ L+ P YK K F A ++ S Y G ++ +Q +G S+D+ +D I YS+ EL + + +GF L +I ++E + + A ++ +
Sbjct: 20 ETFVGDQVLEIVPSNEEQIKNLLQLEAQEHLQ-LDFWK-SPTTPGETAHVRVPFVNVQAVKVFLESQGIAYSIMIEDVQVLLDK-----------------ENEEMLFNRRRERSGNFNFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFS------TGGDKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKNRMWRKTRSKVSGSLCVGVDPNRNWDA-GFGGPGASSNPCSDSYHGPSANSEVEVKSIVDFIKS-HGKVKAFITLHSYSQLLMFPYGYKCTKLDDFDELSEVAQKAAQSLRSLHGTKYKVGPICSVIYQ---ASGGSIDWSYD-YGIKYSFAFELRDTGR--YGFLLPARQILPTAEETWLGLKAIMEHV 414 The following BLAST results are available for this feature:
BLAST of TCONS_00008334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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