TCONS_00008322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008322
Unique NameTCONS_00008322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008322 ID=TCONS_00008322|Name=TCONS_00008322|organism=Clytia hemisphaerica|type=transcript|length=1351bp
CTCAAACAGAGAAGAAGCAGTATGGATAATGCTCACAGCGCAGAGGATCG
ACAAGTAAAACCTAACAGCGCCACTGGTAAACTCAATGAAATACAAAAGC
TCAAAGCTGAAAATGCGAAACTCAAGGAGGATTATGAGAAACAAATCAAA
ACgttgaaattggaaaataaGATTGTTGTTTTGGAGTTAAAAAAGGAGAA
CCAGAATCTTAAACACGAGATGGAGTTAATGCAGATAAGATTTCAACTTG
AGAAAGAATCAAAAAGTGATGGAAACCTTACAGAGTTGAAGAAACAAata
ttagaaattgaaaatgagTACAAAACGAAACTGGAAAAGAAAGACCAAGA
AATGATCCGAAGAGAGGCAGaacatcaaaagaaaatcaaaactttggaaG
ACGAATATCAATCGGAAGTTAAATCTTTGGAAGATCAGTGCGgttcaaaa
atgaaaagtttagaaaaaaagcttcaaGACGCTGAACAACGAAATGAATT
AAATCAAGCTATCATTCAAAAACTTCAGAGTGAGATTGTCTCGTTGAAAA
CACGTGGAAGTGATGAGTCCAGAAATTCGTCTGAAAATCAagtggaaaaa
gaaaatattgcaGCAGAAAGAGTGAAAATGTCAGGTGATGCTACAGAGGA
AAGACTTCGATTGGGAATAGAAAGATTTTACTTGAGGAAAACTTCAAGTT
TAACTCAAAACTACCAGGTTTGGTATAACGATGTTAGCTGTTCATTGGAA
AATCAAGCCCCAAGATATGTATCATTTGATGGAAAAGAgttcatgttttt
gaaaatagagTTTGGATATCAATTTAGTGAAATTGAGATTTTGACACTGA
GGAAAGAGATCACAGATGTCGATGATAACTTGGACTTAAAGAAGGATATA
ATCTGCCTCACATGTGTTAATGGTCAAGAGGTCGAAAACATGAACTTAAA
AACAGATACAGAAATCATGTTGCTTCATCCAAAAGAATTTTCCAAATGTT
TGAATTTGATCAAACATAACAATAGAAATAATCAGAATCGCAAATGGACT
GAGCGTATTTGGTATGATGGTTATAATAAGACAGCTATAATTTTATGTGT
TTTGTAAATTAAAGATTATCGTGTTAAATCGAATAAATGCCCTCTTCATA
TAAACGCCCCATCGAACAAACGCCCCTCCCTCAACTGCCCTAAAGGAAAT
ATATTCGATGAACGCCCCTCCCCTCTAAGAGGTTAATTTGAAACAAGTAG
CTGCAAGAGAAAACTTAAACATGTGTTAATATTGTATTCTTTAGTATTCA
AAATAATTCTGACCCAATCTTACATCTATAAAGTGCGATCGGGGATATCC
C
Run BLAST on NCBI

transcript from alignment at sc0000084:379973..381395-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008322 ID=TCONS_00008322|Name=TCONS_00008322|organism=Clytia hemisphaerica|type=transcript|length=1423bp|location=Sequence derived from alignment at sc0000084:379973..381395- (Clytia hemisphaerica)
CTCAAACAGAGAAGAAGCAGTATGGATAATGCTCACAGCGCAGAGGATCG
ACAAGTAAAACCTAACAGCGCCACTGGTAAACTCAATGAAATACAAAAGC
TCAAAGCTGAAAATGCGAAACTCAAGGAGGATTATGAGAAACAAATCAAA
ACGTTGAAATTGGAAAATAAGATTGTTGTTTTGGAGTTAAAAAAGGAGAA
CCAGAATCTTAAACACGAGATGGAGTTAATGCAGATAAGATTTCAACTTG
AGAAAGAATCAAAAAGTGATGGAAACCTTACAGAGTTGAAGAAACAAATA
TTAGAAATTGAAAATGAGTACAAAACGAAACTGGAAAAGAAAGACCAAGA
AATGATCCGAAGAGAGGCAGAACATCAAAAGAAAATCAAAACTTTGGAAG
ACGAATATCAATCGGAAGTTAAATCTTTGGAAGATCAGTGCGGTTCAAAA
ATGAAAAGTTTAGAAAAAAAGCTTCAAGACGCTGAACAACGAAATGAATT
AAATCAAGCTATCATTCAAAAACTTCAGAGTGAGATTGTCTCGTTGAAAA
CACGTGGAAGTGATGAGTCCAGAAATTCGTCTGAAAATCAAGTGGAAAAA
GAAAATATTGCAGCAGAAAGAGTGAAAATGTCAGGTGATGCTACAGAGGA
AAGACTTCGATTGGGAATAGAAAGATTTTACTTGAGGAAAACTTCAAGTT
TAACTCAAAACTACCAGGTTTGGTATAACGATGTTAGCTGTTCATTGGAA
AATCAAGCCCCAAGATATGTATCATTTGATGGAAAAGAGTTCATGTTTTT
GAAAATAGAGTTTGGATATCAATTTAGTGAAATTGAGATTTTGACACTGA
GGAAAGAGATCACAGATGTCGATGATAACTTGGACTTAAAGAAGGATATA
ATCTGCCTCACATGTGTTAATGGTCAAGAGGTCGAAAATATGAACTTAAA
GAANTTAATAAAGAAGGATATAATCTGCCTCACATGTATTAATGGTGAAG
AGGTCGAAAACATGAACTTAAAAACAGATACAGAAATCATGTTGCTTCAT
CCAAAAGAATTTTCCAAATGTTTGAATTTGATCAAACATAACAATAGAAA
TAATCAGAATCGCAAATGGACTGAGCGTATTTGGTATGATGGTTATAATA
AGACAGCTATAATTTTATGTGTTTTGTAAATTAAAGATTATCGTGTTAAA
TCGAATAAATGCCCTCTTCATATAAACGCCCCATCGAACAAACGCCCCTC
CCTCAACTGCCCTAAAGGAAATATATTCGATGAACGCCCCTCCCCTCTAA
GAGGTTAATTTGAAACAAGTAGCTGCAAGAGAAAACTTAAACATGTGTTA
ATATTGTATTCTTTAGTATTCAAAATAATTCTGACCCAATCTTACATCTA
TAAAGTGCGATCGGGGATATCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004672XLOC_004672Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008322-exon-sc0000084-1575043694:380466..381395TCONS_00008322-exon-sc0000084-1575043694:380466..381395Clytia hemisphaericaexon
TCONS_00008322-exon-sc0000084-1575043694:379973..380393TCONS_00008322-exon-sc0000084-1575043694:379973..380393Clytia hemisphaericaexon
TCONS_00008322-exon-sc0000084-1510915933:380466..381395TCONS_00008322-exon-sc0000084-1510915933:380466..381395Clytia hemisphaericaexon
TCONS_00008322-exon-sc0000084-1510915933:379973..380393TCONS_00008322-exon-sc0000084-1510915933:379973..380393Clytia hemisphaericaexon
TCONS_00008322-exon-sc0000084-1491911889:380466..381395TCONS_00008322-exon-sc0000084-1491911889:380466..381395Clytia hemisphaericaexon
TCONS_00008322-exon-sc0000084-1491911889:379973..380393TCONS_00008322-exon-sc0000084-1491911889:379973..380393Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:379973..381395 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0310663	0	0	0.172066	0	0.227833	2.43801	2.48768	1.26708	1.81298	3.56389	1.16432	3.33402	1.74211	3.26143	4.2697	2.15831	2.95456	2.75375	4.24602	2.64051	3.11917	2.29514	3.08802	4.9435	4.92792	3.00332	3.15969	4.46923	2.44426
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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