TCONS_00008320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008320
Unique NameTCONS_00008320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1991

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008320 ID=TCONS_00008320|Name=TCONS_00008320|organism=Clytia hemisphaerica|type=transcript|length=1991bp
GAAATATTTGTTTATGTCTGGTTGTGTTATTAAGAATTATATGGTGTAGA
GTATGGTTTGATAGATTTTGGCTGATTTCAGATGGATTTAAAAAGAGAAC
AACCGCAGAAGCCTTTGTACACCACGCAAGCACACGTCTTTCAGATCGAC
CCGGACACGAAGAAAAGTTGGCTACCCTCATGTAAACAAGCTGTCGGAGT
ATCTTACTATTATGACAGCAGCAAAttcatttataaaataataTCCGTGG
AGAATGCGAAGATCTTGATTAACAGCACAATAACATCAGCAATGACATTC
ACAAAAACATCACAGAAATTCGGACAATGGTCGGACGCTAAAAATAATAC
TGTTTACGGGCTTGGCTTTGGATCGGAAAGTGACCTAAAGAAGTTTGCAG
ACAAGTTCAAAGAAGTCAAGAATAATGTACGTTGCGGCACTCCACCGTCG
GTACCAAAGAATCCTGCAAACTTGAAGAACAATCATATCATCGATCCTTC
ACCAGCGACCTCCATGAAAAGCATGTCATCCAACAGCACCAGTAGTTATG
ACGAGGAGACGCAATCACCTGGTAGTCATCGCTCGTCATCAAGCTCAAGC
GAAAGTCAAATCAAATACGAAAATGATCGATTGAAAAAAGCGCTTGCTCA
AAGCTCATCGAATGCAAAGAAGTGGGAAACTGAATTTCAAACATTGAAAA
ACAATAACGCCCGCTTGACGGCCGCCCTACAAGAGAGCGCGGTCAACGTG
GAGAAATGGAAAGAACAACTGAATAATTATAAAGAAGACAACCAAAGACT
CAGAAAAAAGCTGGCGGCCAGTGCTGGTTCTGGCGGTGCTAAATCAAATT
CGACGGAAGTATCCGATTTAGAAAAACGGGTTTCGGAATtagaaaataaa
ctaaaacggAAAGAAGAGGAGTTATCTCGCATAACGCAGCACAGTACGGA
TGAATTACATGTGTTACGGGAAAAGAATGCGCAGTTATCTAAAAAACTTA
AAACACACGAAGATAAATTATCAGATGACGTAAACAACAATCGCAAACAA
AACGAAGAAATACGAAACTACGAAGGCAAATTGAAACAATTCAGCGAAAC
AAGTCATGAAATGGAGTCGAAGTTACGAGAACTTTTTACGCTACAACAAA
AAATGAATGGTTTGATGAAAAGTTGAAATTCTTTGTGAGTTTCTCATTCA
CTCTCTTCTCTGTTTATGTTTCACTTCATGTTTCAGATGTGTTCAGCTAG
ATAATTCATGATAaacatgacgtaatgttttctattaTTTTGGTAGTAGT
GGCATTTCCGCTACTTGCCAAAACCGGGGTGGTTCCGTAGAAAGgattac
gtaatgaatatcaTTCCATGAATAAGAGAGGACCTGTTTAGCCCCAGTTT
TTCTGttcaattttaatattttctcaaatttgtcGATTTCAGGCAAATCT
TTAGATTATAAAACTATGAGGGGACTAGAAACGAAGGACAGACAATCTTT
CCAACACATAACAGTGTATAAATGAttcttctttttaaagaaagttcAAT
TTATCCACTTTTTAAGTATGTAATGAAAATATATTATATAGTATTTTACC
ATAGTAGAGTTAGACCAAAAAAATAGTGTACCATAGTCTCAAAAGAAATT
GTATATAATTAAaatatgttatatcataaactCAAAGTGTGTATTATTGT
TTTAGTGTTCTAGCTTTGCCGAGATCagataatttttgttttacatTTAA
ACTTAGCAAATTTTAACTTTGTCTGCTAATATCTACGTCATTTTACTTGA
ACAAGTTTGCCCTACAATTTTCAAAGCTGTATGAAAACGaatgtaatttt
tctttaatgcactctttgttgttttgtCTTCCGCTgagatgaaatttgaa
atttctctaaaatctcagctggcacacaacgttgtttcaacgttcatcta
atattcataacgtccatataacgttgaaTGAACGTTGAAAA
Run BLAST on NCBI

transcript from alignment at sc0000084:339162..352402-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008320 ID=TCONS_00008320|Name=TCONS_00008320|organism=Clytia hemisphaerica|type=transcript|length=13241bp|location=Sequence derived from alignment at sc0000084:339162..352402- (Clytia hemisphaerica)
GAAATATTTGTTTATGTCTGGTTGTGTTATTAAGAATTATATGGTGTAGA
GTATGGTTTGATAGATTTTGGCTGATTTCAGATGGATTTAAAAAGGTATT
TGAGCTATACTAATTGTCGGAATCCCTCATACTATATGATTATTTTCTTA
AAATCAATGCATACATAAAAGATTTTGTTGGACAGTTTTTGGACCTACCT
CCGGGTACCCCGGTGGAGGTCCTTTAAATTAACCCATGTTCCTTCGTTCG
TTCGTTCATCTGTTACCAGCTTTTCTGGGGATTGGCTCATTACTTTTTTC
TGTTAATTTGGCACAATGATACAAAATGATGACGGAGCCCGATTTTCGAA
AAAAAAAAATCATGTTGGAAAAACTGGTTTTTTGGCATTTTCTCGAGATT
TTATCATTAGTTTTTTCAGATTTTTTGCTCAAAGATGCGTATTAACAATG
CCCAAAACATGGTCGAGTCCGATTTTTGAGAATAATTGTTTTCCGGCCGA
AAATGCCGGAAACATGCCGGAAATTTCCGTTTTTGCAGATTTTCATTGGG
TTTTTTCCTTATATTTCTATGTTTTTCACACAAAAACATTATTGATAACA
ATGCTCACCATCAAGCATGATTCAATTGTCAATAAATCTGATTTTTGCGA
CCAGAACTTTCTCTTTATTTTTTCCCTACTACAACCCTTCCCTCTCCCCC
CCATCAACAATCAATGATGAATTTATTGTGTTATGCATTTTCGCTAAACG
CTATATTTTCTGACTGATTTTTTTCATTTTTCTCCTCGCATTGCTATCTA
ACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTACTTATGAT
TTTTTAACATTTAAAAGTAATTATTGTAATTGCGGAAACGCGCAAAACAA
GATGTCTTTCTTTTTTTTCGATTCTTTCCCAAATCTAAAGTTCGTTTTTT
TTGCACAAGATTTTGTTCATTTGCTCGATTAGTTTTTAAATGAAAATTGG
GTTGCCTAGCATGCAAGACTAGCAAGTCCCGGGGGAGGGGGCACTCGATT
CAAAAACGCTTACCCTTACAGTGCAGAAAAAAACTTGGCAAAGTTGGAGT
GAATCTGGGGGAAAAATCGACCATTACGGTGCATTTTCTTGAAGATTTTT
TACCATTTTAAGGCAAAACATGGTCAAATTTTCCAAATTCTACACCCTTA
AAGTACGATTTTTCTCATAATTATTAGCTGATTTCGATCCTTACGGTGCA
TTTTATAAAGCTTGGGAAATGGACTCTTGTCTTAAGGACCGCAAGTACGG
TAGGTCGTTTACCTTGAGTGCTCCTCCCCCGGGGGTTCTAAACAAATTAT
TGGTAGAAATTACTTACAATAAACATTTACCATCGATCGAGAAGTTATAA
TAATAATATCAGTTTTTATATATTTTTTTATGATATTTTAAATATATTTC
TTATTATATACAATTTGTCACTTCCATTATTTTTGCTTTTTTCTAAATAA
ATGTCCGAATTAGTCGTTTAGAATGCCAGGTTATCGGCGATTTGCCGATC
TTTGCCAACTACGGTGTGCCTTACACCAAGAAACTTGCTTACACTTATCT
TCCATTACCTATATTTCCGTAAATATCGGATCTGATCTGCTCCAAAAATT
CTTTGCTAATTCCGTTAAGTTTTTCCTGAAAGATATTTTTTTGACCATAG
AGAACAACCGCAGAAGCCTTTGTACACCACGCAAGCACACGTCTTTCAGA
TCGACCCGGACACGAAGAAAAGTTGGCTACCCTCATGTAAACAAGCTGTC
GGAGTATCTTACTATTATGACAGCAGCAAATTCATTTATAAAATAATATC
CGTGGAGAATGCGAAGGTAAGGATAGTCTTAACAATTGACTAGAGTCGGA
TTAGTTTTTGCGACTGTTCGTGAATCCGAAATTTTCCCCGACTCATTTTT
CCCTTTGGATACCATTTAAGATTTAAAGGTGCTATTTCGGTTACGAAGGG
GCATAGGGGATGGGTGGTTTTTGATAATTCCAATTTTAGCGCCAGTTAAC
CGATGCTAAAAGATCTTCCAACCATCCATTTTTGTTTAACTTCTAGTCCT
CGTTTTAAGTCTGTTAAGAGTCAAAAGATTTTTGCGAGCATAAACTTTCG
CGAATTGCCCTGTCAAGAATCTTCAAAGACATTTACTTTCGCGAAAAAGC
CCAAAATTCGCGAAAATCGCGAAACTTTCTGCTCGCGAAAGTTTGTACGC
CTAAAGTATGTTGTCCTTATTTTTTTGTTTTTTTTTGTTTTCGTTTTATT
GTTTTTGATAAATCTCACAAGCACAACTCTACACGTTTTTTACAAGAACC
AGTAAATTTTGACTTGAGCTGCGCTGGTCAAAATTTTTTCAGGCTTAAAT
GTTCTTACGATGTTCTTTACGCTTAGTTTCTTTACTTAAAATCAGTAACA
GTACTTGGTAATTTCTAAAATCTGAGGCTCAGATCGTTCTTAATTTGTTC
CTATGTTTTAGCGAATTTATGTTTTAGCCTCATGTTCTTATAAAAGAAAA
GTGTGTACTCAGTCTAGAATATCTATGAATCGATAATCACCGTGCATTTT
CTTTTCCTTCTTAGATCTTGATTAACAGCACAATAACATCAGCAATGACA
TTCACAAAAACATCACAGAAATTCGGACAATGGTCGGACGCTAAAAATAA
TACTGTTTACGGGCTTGGCTTTGGATCGGAAAGTGACCTAAAGAAGGTAG
GTAACACAAAATATATATATTATTAAAAAAGACAGAGGGGATGTTCAAAT
TGTTCAAAATTCTTTCGTCCAGCGGAGTATCAAAAAGGTCTTTTCCTTCT
CCAATGTCAAGAAAAGTTTGCCATACCAGGTCTTCTTGTTGCTTGGTTTG
CAACGACAAGAAAAATGGCTAGTTTTTGCTGGTAGATATTTTAATACATG
TCTTAATAAGCAATTAGGTTCGCATTATGCTTAGCATTCTATTGTTCTCA
AATAATAGAGCCTTTGTTTAGATACCAAAAGCTGAGCATGTATATGCTTA
TAGCTGTTTTTCTTATAGAAAAATCATGTATTTTTGCATGTTATTTAGTT
TGCAGACAAGTTCAAAGAAGTCAAGAATAATGTACGTTGCGGCACTCCAC
CGTCGGTACCAAAGAATCCTGCAAACTTGAAGAACAATCATATCATCGAT
CCTTCACCAGCGACCTCCATGAAAAGCATGTCATCCAACAGCACCAGTAG
TTATGACGTAAGTCCGTTGTGTAGTCCATGCAATGTTTTCATCTTTTTTC
ATGGGCTCCGTCAACGGGGAGGGGGACACTTTTTTGCAGACTCTACTTAT
GTACATAAGAACAACTTTTAAACAGATCAATTTAAATCTTCCCAATTAAA
TAACGTTTTAGGGTATTTTGAGGGTATAAAAAGTGATAAATTTTCTTTCG
AGTGACATTTTTTTCCAAAATATTGGACCCCCCACTCCAAATACACGTGC
GTTCTAAAATCTCTAAATGGCTCGACGAGTTGAAAATTCAGTGTTTCGTG
CATGACTACTTGACACCAAATTCTCGAGTTTACTCCGCTTTTGGCGCTAA
TTCCTCACATTGTCCTTCTGTTATGTATTATGTTGTTGCAGTGCAAAAGT
AAGTTTTTCGAATAAATCATGCCCCTTTTCATGAAGGTCAATACATTTGA
ATGTAAATGGTTCCGTCGGGACTCCATAGAAATGTCACTTAGTCAGAGAT
AACACATCGTCTTTCTAATAAATATTTCGGTCAACTGGCCTTTTTCAACA
TAAATGTCAGAGTGACGGCAAAGGCTTCTCAGAAACGTTTTAGTTCTTAC
TGCAATTATTTTCTGTAAACCGATGGATATTTTGATTCAAAGATAATAAC
GCGATAATTCAAACAAATTCATCTTAAATCAAATAGGTGTTAATACTTTT
ATTGTAAAGGGATTTGATGACTTTTGTGAAATTAATGATTTTTTTTTTTT
ATACTAAATGATTTCATTTTGTTTCGTGGGAGGAGCTGTTAAAACTCTAC
CCTGGTGTGTGGTTTTGGTTTGTACTTTTTGATTTTTCTTATTATATGAA
CTTTAAGAGTTTTTGATACAACTGTTTTGCCTTTTTATTTATCTTTGAAG
TGTGGGTTGGTGTTAGTGTAAGCTAGTAAGACTAGTATGATATACGAGAG
TAAGGCTTAGGGTTTTTTGGGCTTCCTTCTTGAAATGGACAGACACCCTG
AGGATTTGAAAAACTATTTTCTGGTGTTTTGACACACAGAAAAAGGCTCG
TAATGAAATGATTTTTTTAGCTGTACAAAAAAGTCACTGTTTATTTACTT
TCTCGTTAAGTTTTTATTTGTGCAAAGTGTTGACACTTTTTTGACAAAAG
CACCGCTAAACCTTTCACTCTGAAGAAAAATAAACAATTTTGTGAACTCG
TTTTGTCCTGTGATTGTGTTGTGATAATAGTGATCTCGTCTTACATCTAG
CAATATTACACTTTTTTAAATATGAAGTCGCTTATGTTTGATTTTTCTTG
CACAAAGAGAGAACAGGTTGTTCAAATATATTCAAAATCTCGTGAGAAAG
TCTAGTAGCGAGCTTTTTTTAGTTTATGAGGCTAGTCCTGTCTTGAGTTG
GAAAATAACAGGGTACCGATCCGAAGCTGGTCAATGACTTAATTTTATCG
AATTTTCTATGTTTTCATTGTGACCCATTAGAAATCGCTCCCAAATACCT
TGACTACTTTTTGACGATGTAAAGATTTTCAAGCACTTGGATGACTTTCT
CTTGACGTTGGTAAACCGTTTCGTTTATCGTCGAAGAATTTTTGTAATCT
AGCCAACAGTTTTGTCACTTCGACGATAAGTGAAAGACCTGATTTTTTCT
TGCTAATTAAAATTGAATTTTTTAAATGAAGTTTCTTGAATTTTTGAGTT
TTTCTCATTTCCTTGTGTGTAACCTATCATCAACGAAATTGGTGATCCAG
TTGTTTTGTAGACTGGTGAGTGTTATAGTTTGTTGCTTGGAGCCTTGATT
TTTCATTTCGTTGTTGTTGTTATAAAGCTAAAAAACTGAAACTGAAGACA
ATAGATACCTGTAAAAATCAAATTCGAAAAAGAAAATGCCAGAACCAAAT
GATCCCAAGAAACCAACTCTGGAAAGAACTCGTGTTAGAAAGAGCTCAGC
TCCAGATGATGTACGTATCCGAAGGATTTCTGCACCGGTACAACAAGCGG
GTGCTATGGATAACGGAAAGGCCCGTAGTTCACGCCGCGTAAGAAGTAAA
ACATACGATGGTAATCAGGTAATGTTATCCTCATTTATCGATGTAACAAT
CAAAAGTTTGGCTCCCTTTGCCTTACAATGTTTTATAAAGTTCTCGAGTC
GCAGCCAAATTCGAAACTCGAAACCCGAAAAAAAATCTCAAACTCGTGAA
AAATTAGACGCTATTTCGTTGCAGAAAATTATTTTTATGTTTAGATTGAG
AATTTTACTATTTGGCCAGTGGAGTAAGGGGTATTTCATCCTTTTTTTCG
AAAGTTCAACTTATTTCATCTCGATCGCATTTTGTTTAAGATTTGCTACC
CCACACCAAACCCCTTTGGGAATAAATGTCATAATTGCAACAATTACCAA
TTACTAAATTAATCTTTATTCTGCCTACTGAATGACGTCATTGTACTTGA
GGCTTGGGAGCCCTTCATTGTTTTCCTTTCCGTCAAGCGTGTAGGAGTTT
GAGAGAAGATAACCATCAAAACAATGTCATGATACAGGTGCAATTAAAGA
TTCCCTAGTGGCTTTTGCGTGCTTTTATAAGAATAATTATGAGGAGATTA
TACAAAAGTATACTTTGTATTTTGCCCAGTAAATCTGACATTGTGTTGCT
TTCAAAAGCTACACGCTTTTTCTTGAAAGAACAATTAAGTTTTAGCTAAG
CCCTGGCTGTTCTTGGTGTTCCATGATTTTCAAACTTGAATGTTAAATGT
CAAATGTTCTTATAGTGTTCTTACTATATATATGTACTTTGTTAATAATT
TAGGACTTAGCTTTTTCAGAGTTGTTTCTTCGGGAGTCCTTGCCAGTGTC
TATTGCATGCACAGTTTCGTTTTTTATTCGAACACTATTTCCTGATGTCA
GCTTTTAAAGATTTTTCTTAAAAAAAGTGAACTTTATGAAAATTATTGTG
TGTGTGGGTAGAAAGAAAAATATGACGATTACCGTGTAACGTATTTGATT
ACTTTTGAGAATACTGTCCAATTTGGATGCGATTTGGTTTCTTATTATAA
GAAACTCTATGTTATACTTCTGTTTTTTTTTGTTTTTGTTTTTTGACTGT
GAATTATGCACAAAATTTTGAGGTCAAGTCAATGTATTTGAGTTCAGATC
AGTTCAGATTCAAGATTGTGAGTTATTTGAGTGTTTGGTCCAATCCTCCC
AATGTTGAATGGCGTACATGTTTAACTGATTCTTTTTAAAGGTTTTTTTC
TTACATATAGGTGTTTCCGTTTCATATCAGACACGTATTTCATATCAGGA
CAGTGTCTTGCTATTGTTATATTATGCTGATGTAAGCAAACTTTCTGGCC
AATCTTGCTCCACATCCGTGTCAATCCAATGTGAAAAAGCTTGTGAATTA
AAATTTTTCTCTTTTCTAAAAGCAAAACCTTTAACCGTTAATGTACCAGT
TATTTTGCACTACTTAAACCTCCAAATGATTAGTTCATGCGAATCCCTGT
TATAAAAAAGCAGCTGAGATAATACAGTCTAGGAGTCTCTATTGCTTGAA
AAGACAAGGGGGACTGAAATTTCTTTGAATCATGGAAATTTCGATTTATT
GTGATTGTTTCATAAGGAATTGAGGGACTGTAGTAGCCTAGTTAACTAAG
CCCGTATTCACAAGGCTAGGACACACGGCTTATGGCAATATAGCGTTTTC
GGCGCTTTAAAGATTTTATATATTTACAGATTTTAAGTTTGCCTTGGAAT
ACTGCGTTATTCAGTCACAACTTAACCATCAGATTTATCCAAGTGACTGA
ATCAAACTAGCTTAGATTTCTAGGCTAGGACTGTAGGGACGAGAAAGCTT
GTTCAAATTTGAAGATTCTACTGTAATAAAAATTAATAGTAAGCATTTAA
TAAACCAAAAAATGTTCTTATATGGAAAGTGAAATACCTCTGCTAATACG
ACATCAATTAAAAAAAAATAAACTGTTTGAAAAATATATATATAATATGT
AAGAGAATAGTATCTATCAATGAAAAGGGATATAGAACACAAATCACATT
TCTATCATCAAATAGACATAGCTGTGTCGTTTAGCAAGACTGTCTCTAAT
ACAGTTAGTTGAAAAAAAGATCTTTGATCTTAGTGGAAATTTTTGAATTT
GTTTTTTGTGGTTTTATTTGAGTATTTTTGTTGGTAAGATGAAAGATAAA
AGCTTTCTTGCACTTCCACGGGTAAGGTTCTTGAATTTCTCTCCATGCGT
TTCATTTAGGGTTCTCTGTCATTCTAAGTTTAGCTCTTTCCATTGCCAAG
ATTCGTAGAAGGCGATTAGTGGAGAGAGAGTTGACCTCGCTACGTGTTCA
ATTTTCATTGGATTCTTACCCAAAACCTTCCGGTCAGTAGACAATCACAA
TAATCATTTGATCACGTTCTTAATGTCGGATTTGTATACATTGCTGGGGA
CAATTTCAATCAATGTAGTTTTTTGGACCCAGTATAATTTTCCCGAAAAC
TTGTTCACTAAACTAAACTAAGCTTGGGAAAGGTTGAAGATGCAACTCTA
GCCGTTTCGGGCTTCAAACTCAATGTTTGTAATCGGTAACAAATAAAACA
AAATTTCGACCCTATGCAACCACTTTCCCAATTTCTACAGACTTTTGTTT
GCATTCTGATTGGATCTTTTCGAAGATGCTGTGTTGGTTGAAAAAACTGT
GTAAAGAAGATCTCGGGTTGGTTTTGTATGTGTATTGAAGTGAAGGGTTG
AAAGCGAATCTAGATTTTCTACAAAACGGTCAACATTTTACCATCACCCG
GCAACGTATTAGCCAAATATTTGAATGTTGAGAGGTTAAAAAAACTTATG
TTATTTGAGAGTGTGTTTGTGATATCACCTCACCTAAGAAATGATCGCAA
TTTTGGTTATAATAAAGCACTGTTGTTTGCTTTCAAGATCTGAGGACAAC
ATTTGTAGGGAAAATGGTATATTTGTTAAACATTTTTCATGTCCTTTTTC
TATGTTTGTTTCAATTTCGTTTGAAGACACTGTAAGTTGCATAGCTAGAA
GTGCAATGGAATGAAGGGAAGCGCAAACGATGTAGTATATATCCTGCACT
GACACAGCTCCATTATTACCTTCTCTCTATGTACAGGTCGATTTGNGTAA
TTTCTCCTTTGCATAGTTCGATCATTACTTTGGCTCTACGTACAGGTCGA
TTTCTAACCATTTTTTCGCTTTCATTATGTACAGGAGGAGACGCAATCAC
CTGGTAGTCATCGCTCGTCATCAAGCTCAAGCGAAAGTCAAATCAAATAC
GAAAATGATCGATTGAAAAAAGCGCTTGCTCAAAGGTAACATCTCTTCCC
CTTCTTCATAATCGCCGAGCAGAATCTAATACTCTGCGCATGATACGCAT
TCACTCTAAAGGCCATGGATCCGTAAGAGAAACTGCCTAGGTTGGCGAAC
CGCTTGAATCCTTTTCATACAGTGTTGGGATGAATTTTTGGATTCTAAAA
AGTAGGTGGTGCTGAGCTGATGAGAGATTTCAGGTGGGGTAATCCTATGC
AGGCGAGGATGACCTTTTTCAGGTGTGGGTTTAGAGGTCTTGTCTACTAA
TAATAGCTCTGATTTTCTGATTTCATAAGACTTCAGCCTGAAATTCAAGG
GACCAGTAATCAAAATCTTTGAATATAAATAAAGTAGTTAGTATACCTTA
ATGTGGAAAATTTGTGAGCCAAGAAGCGATTGAAAATATGCGGTGAAATA
GAAGAATATCTTTTGTTTTACAGCTCATCGAATGCAAAGAAGTGGGAAAC
TGAATTTCAAACATTGAAAAACAATAACGCCCGCTTGACGGCCGCCCTAC
AAGAGAGCGCGGTCAACGTGGAGAAATGGAAAGAACAACTGAATAATTAT
AAAGAAGACAACCAAAGACTCAGAAAAAAGGTAAAGGACGATTGACTTGC
CAATCGGTTGGAGGATATTGTACTCAGCTTGGTCATTTCTATTTTATGTT
AAGAAGTTTAGATAACAGTTTTAACTCAAAAGACACATCATTACATACTG
TGTGCCCCTTGTTTTGATGAGAGCCCCATCGCAAAGGAGGACTGAAGCAA
AAATTTTACCTGCTTTTATCTGTGGACTGAGAGATTTTGGACATGATGAA
TGGGAGAGCTCGTAGTTTTAATATTTCGGGAGTTTTTAAGATACAAACTA
AACCGAAAATGAAGTTCTTTATGAATCTTGCTCTCCAATCCTCAAAAGCC
AAGTCTTTTCTATTCAGTGTTAAATTTGACTTGATTTTTTGGACCTACCT
CCGGGTACCCCGGTGGAGGTTCTATAAATTAACCCATGTCCGTTCGTTCG
TCTGTTCGTTCGTCCGTCCGTCCGTCTGTTACCAGCTTTTCTCAGGATTG
GCTCATTAGTTTTTTCTGATTTTTTGCACAATGATGCAAAACGGCAATGC
CCAGAACGTGACGGAGCCCGATTTTTGAGAAAAAATTTATTTGGGCGAAT
TTGAGCCAAAAACTACCTAAAATTAGGGTTTTTTAGACTTTGTGCAAAAT
CCTGTCATTACTTTTTTCTGATTTTTTGTACAAAGATGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA
AACGGATTTTCGTATTTTTGGGGAAATTCCCTTTAACCAAATAAGAAAAT
ATAGCTTTTCTCAATGTTGACTCGTTATTTTTTTCTGATTTTTTGCACAA
CGACGCAAAATGGCAATGCCTAAAATGTGTCGGAGCCTGATTTTCGAAAA
AAAATATATTTGGGCAAATTTGGGCAAAAAACTGCCTAAAAATAAGGTTT
TTTGGACTTTGGTCAAAATCCTGTCATTACTTTTTTCTGATTTTTTGTAC
AAAGATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTCCCTTTAACCAAATATGAAAATATAGCTTTTCTCAATGTTGACTC
ATAATTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAATTCCCAA
AATGTGAAGGAGGCAGATTTTTAAGGAAATTTTTTTTGGGCAAATTTGGG
CCAAAAACAGCTTAAAAGGTTTAAGTGATTTTCGTATTTGGGGAAATTCC
TTTATACCATTTTACATTATTCAACACACAAGCTTTATTTTTCTATTCTG
AATTTTTGTACATATATTGTCACTTTTTTCTTATTTTCATCTGATGTTAA
TCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTTTCATTTCAGCTGGCG
GCCAGTGCTGGTTCTGGCGGTGCTAAATCAAATTCGACGGAAGTATCCGA
TTTAGAAAAACGGGTTTCGGAATTAGAAAATAAACTAAAACGGAAAGAAG
AGGTTTGTCTCTTTTCCCTTTGATATTCCAGCAAGTTATTTGATTTTAGT
TGTAAAGAGTTCAACGATTTGCATTCGCATTGTACTTGTTTTTCCCCATA
AGTATAACGTTAAGCATATACAGGCTCAGTTTTTGGTACCTAAACAATGG
CTGACCCTGACTCAAATAAAGATTTTTACCTCAAATTTAATTTCCCCTAA
GCATTAACGTGTATTTGCCACGCCTGAGTTTCGTAATTAATTCGTTTGTA
CTTTTTCACGCGTAGCGTCAAAAATATTTATTTATTGCCATGCGTAGACA
CTTGCTTATTTAAAAAAAACATGCTCTCTCAAGTTCTTTAACGGTTTAAA
ATCATTTTCATCTCAACCGGTGTGACCGAACTGACTGAGTGGCGTTGTGC
CGAAATACTTGACAAAACGCCGTGACAAAAGCGGAAACCATCGTGGAGAC
AGTTTAGTGAGTGTTTGCTCGTTGGAGGTGTCCGCCTTTCGGATGTTTTA
CTGTATTTATTTTCTTCCAATTTTAGGAGTTATCTCGCATAACGCAGCAC
AGTACGGATGAATTACATGTGTTACGGGAAAAGAATGCGCAGTTATCTAA
AAAACTTAAAGTAAGTGTTTTTTTCTTACATGCTATCTGCGTTATATATC
TGGGAATGAAAACGGTCAGTGGAAATCCGTAACATGATTGGTAGATTAAG
TTAATTGGATTTTTTTGGCGTGGGTTTAATTTGGCGATTGAACAAAATGA
GATTTTAGGTGGGAATCCAATTTGGCGAATGATCAATTTTCTAGAATTTG
GTTGGTATTTCACTACTACCAAAATTAATCCAGGGTATATACCAATATGG
TATATATAATATATAATTTCGAACACACTTATCAATAAAACCAAAGCAAT
TAAAAGTTAAGAAGTTTGCAGAAGAAGATACATACGTTAGTCAAGATAAC
CTCATTTTTCAATGAGGCCATTATGGAAGCAAACATTCGATTCTGTAAAG
ACGATCGCTTACGCAAATCGAACGTTTACTTCCATAATGGTGGAAGTTAT
GAGTGATAGTTAAATAATCTATAAGGCCTGGCCGTTTGACTGAAGTCCCA
AGAAGATGATTGAAAACAGTCTGAAAATCCTGGATTACTAGGCTCTCCAT
GTAAAATATCGAATCTATCTGAATTTCAAGGAGATTTGTTTTCACCTTTC
AGACACACGAAGATAAATTATCAGATGACGTAAACAACAATCGCAAACAA
AACGAAGAAATACGAAACTACGAAGGCAAATTGAAACAATTCAGCGAAAC
AAGTCATGAAATGGAGTCGAAGTTACGAGAACTTTTTACGCTACAACAAA
AAATGAATGGTTTGATGAAAAGTTGAAATTCTTTGTGAGTTTCTCATTCA
CTCTCTTCTCTGTTTATGTTTCACTTCATGTTTCAGATGTGTTCAGCTAG
ATAATTCATGATAAACATGACGTAATGTTTTCTATTATTTTGGTAGTAGT
GGCATTTCCGCTACTTGCCAAAACCGGGGTGGTTCCGTAGAAAGGATTAC
GTAATGAATATCATTCCATGAATAAGAGAGGACCTGTTTAGCCCCAGTTT
TTCTGTTCAATTTTAATATTTTCTCAAATTTGTCGATTTCAGGCAAATCT
TTAGATTATAAAACTATGAGGGGACTAGAAACGAAGGACAGACAATCTTT
CCAACACATAACAGTGTATAAATGATTCTTCTTTTTAAAGAAAGTTCAAT
TTATCCACTTTTTAAGTATGTAATGAAAATATATTATATAGTATTTTACC
ATAGTAGAGTTAGACCAAAAAAATAGTGTACCATAGTCTCAAAAGAAATT
GTATATAATTAAAATATGTTATATCATAAACTCAAAGTGTGTATTATTGT
TTTAGTGTTCTAGCTTTGCCGAGATCAGATAATTTTTGTTTTACATTTAA
ACTTAGCAAATTTTAACTTTGTCTGCTAATATCTACGTCATTTTACTTGA
ACAAGTTTGCCCTACAATTTTCAAAGCTGTATGAAAACGAATGTAATTTT
TCTTTAATGCACTCTTTGTTGTTTTGTCTTCCGCTGAGATGAAATTTGAA
ATTTCTCTAAAATCTCAGCTGGCACACAACGTTGTTTCAACGTTCATCTA
ATATTCATAACGTCCATATAACGTTGAATGAACGTTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004671XLOC_004671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008320-exon-sc0000084-1575043694:352308..352402TCONS_00008320-exon-sc0000084-1575043694:352308..352402Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1575043694:350537..350702TCONS_00008320-exon-sc0000084-1575043694:350537..350702Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1575043694:349657..349788TCONS_00008320-exon-sc0000084-1575043694:349657..349788Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1575043694:349146..349304TCONS_00008320-exon-sc0000084-1575043694:349146..349304Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1575043694:343818..343918TCONS_00008320-exon-sc0000084-1575043694:343818..343918Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1575043694:343223..343379TCONS_00008320-exon-sc0000084-1575043694:343223..343379Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1575043694:341351..341458TCONS_00008320-exon-sc0000084-1575043694:341351..341458Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1575043694:340743..340826TCONS_00008320-exon-sc0000084-1575043694:340743..340826Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1575043694:339162..340150TCONS_00008320-exon-sc0000084-1575043694:339162..340150Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1510915933:352308..352402TCONS_00008320-exon-sc0000084-1510915933:352308..352402Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1510915933:350537..350702TCONS_00008320-exon-sc0000084-1510915933:350537..350702Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1510915933:349657..349788TCONS_00008320-exon-sc0000084-1510915933:349657..349788Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1510915933:349146..349304TCONS_00008320-exon-sc0000084-1510915933:349146..349304Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1510915933:343818..343918TCONS_00008320-exon-sc0000084-1510915933:343818..343918Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1510915933:343223..343379TCONS_00008320-exon-sc0000084-1510915933:343223..343379Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1510915933:341351..341458TCONS_00008320-exon-sc0000084-1510915933:341351..341458Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1510915933:340743..340826TCONS_00008320-exon-sc0000084-1510915933:340743..340826Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1510915933:339162..340150TCONS_00008320-exon-sc0000084-1510915933:339162..340150Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1491911889:352308..352402TCONS_00008320-exon-sc0000084-1491911889:352308..352402Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1491911889:350537..350702TCONS_00008320-exon-sc0000084-1491911889:350537..350702Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1491911889:349657..349788TCONS_00008320-exon-sc0000084-1491911889:349657..349788Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1491911889:349146..349304TCONS_00008320-exon-sc0000084-1491911889:349146..349304Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1491911889:343818..343918TCONS_00008320-exon-sc0000084-1491911889:343818..343918Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1491911889:343223..343379TCONS_00008320-exon-sc0000084-1491911889:343223..343379Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1491911889:341351..341458TCONS_00008320-exon-sc0000084-1491911889:341351..341458Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1491911889:340743..340826TCONS_00008320-exon-sc0000084-1491911889:340743..340826Clytia hemisphaericaexon
TCONS_00008320-exon-sc0000084-1491911889:339162..340150TCONS_00008320-exon-sc0000084-1491911889:339162..340150Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:339162..352402 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.241837	0	7.16896	9.08807	2.97916	6.52786	5.92323	9.96385	3.64407	7.08024	4.26973	3.47877	0.331846	0.812572	4.15291	1.35733	6.29228	4.41283	6.065	6.63564	1.54363	1.98126	0.384024	0.545379	0.68967	1.79184	3.88456e-09	0.011437
Blast
[Close]
BLAST of TCONS_00008320 vs. Swiss-Prot (Human)
Match: HOME2 (Homer protein homolog 2 OS=Homo sapiens GN=HOMER2 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 6.338e-67
Identity = 117/233 (50.21%), Postives = 163/233 (69.96%), Query Frame = 1 
Query:  106 QKPLYTTQAHVFQIDPDTKKSWLPSCKQAVGVSYYYDSSKFIYKIISVENAKILINSTITSAMTFTKTSQKFGQWSDAKNNTVYGLGFGSESDLKKFADKFKEVKNNVRCGTPPSVPKNPANLKNNHIIDXXXXXXXXXXXXXXXXXYDEETQXXXXXXXXXXXXXXQIKYENDRLKKALAQSSSNAKKWETEFQTLKNNNARLTAALQESAVNVEKWKEQLNNYKEDNQRLR 804
            ++P++TT+AHVFQIDP+TKK+W+P+ KQAV VSY+YD ++  Y+IISV+ AK++INSTIT  MTFTKTSQKFGQW+D++ NTV+GLGF SE  L KFA+KF+EVK   +     +  K      +NH  +    T   + +S+   + DE+        S +  + + +K END+LK AL QS++N KKWE E QTL+ +NARLT ALQESA +VE+WK Q +  +++N RLR
Sbjct:    3 EQPIFTTRAHVFQIDPNTKKNWMPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFQEVKEAAKIAKDKTQEK--IETSSNHSQESGRETPSSTQASSVNGTDDEKA-------SHAGPANTHLKSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSICRDENDRLR 226
The following BLAST results are available for this feature:
BLAST of TCONS_00008320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HOME26.338e-6750.21Homer protein homolog 2 OS=Homo sapiens GN=HOMER2 ... [more]
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