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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008317 ID=TCONS_00008317|Name=TCONS_00008317|organism=Clytia hemisphaerica|type=transcript|length=2570bpRun BLAST on NCBI protein sequence of TCONS_00008317-protein >TCONS_00008317-protein ID=TCONS_00008317-protein|Name=TCONS_00008317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp MDLNFAGGGEQPQKPLYTTQAHVFQIDPDTKKSWLPSCKQAVGVSYYYDSRun BLAST on NCBI transcript from alignment at sc0000084:335433..367118- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008317 ID=TCONS_00008317|Name=TCONS_00008317|organism=Clytia hemisphaerica|type=transcript|length=31686bp|location=Sequence derived from alignment at sc0000084:335433..367118- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000084:335433..367118- >TCONS_00008317 ID=TCONS_00008317|Name=TCONS_00008317|organism=Clytia hemisphaerica|type=CDS|length=9963bp|location=Sequence derived from alignment at sc0000084:335433..367118- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00008317 vs. Swiss-Prot (Human)
Match: HOME2 (Homer protein homolog 2 OS=Homo sapiens GN=HOMER2 PE=1 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 4.814e-66 Identity = 120/237 (50.63%), Postives = 164/237 (69.20%), Query Frame = 3
Query: 405 GEQPQKPLYTTQAHVFQIDPDTKKSWLPSCKQAVGVSYYYDSSKFIYKIISVENAKILINSTITSAMTFTKTSQKFGQWSDAKNNTVYGLGFGSESDLKKFADKFKEVKNNVRCGTPPSVPKNPANLKNNHIIDXXXXXXXXXXXXXXXXXYDEETQXXXXXXXXXXXXXXQIKYENDRLKKALAQSSSNAKKWETEFQTLKNNNARLTAALQESAVNVEKWKEQLNNYKEDNQRLR 1115
GEQP ++TT+AHVFQIDP+TKK+W+P+ KQAV VSY+YD ++ Y+IISV+ AK++INSTIT MTFTKTSQKFGQW+D++ NTV+GLGF SE L KFA+KF+EVK + + K +NH + T + +S+ + DE+ S + + + +K END+LK AL QS++N KKWE E QTL+ +NARLT ALQESA +VE+WK Q + +++N RLR
Sbjct: 2 GEQP---IFTTRAHVFQIDPNTKKNWMPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFQEVKEAAKIAKDKTQEK--IETSSNHSQESGRETPSSTQASSVNGTDDEKA-------SHAGPANTHLKSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSICRDENDRLR 226 The following BLAST results are available for this feature:
BLAST of TCONS_00008317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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