TCONS_00008315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008315
Unique NameTCONS_00008315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1898

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008315 ID=TCONS_00008315|Name=TCONS_00008315|organism=Clytia hemisphaerica|type=transcript|length=1898bp
TATAGAACACAAATCACATTTCTATCATCAAATAGACATAGCTGTGTCGT
TTAGCAAGACTGTCTCTAATACAGTTAGTTGAAAAAAAGATCTTTGATCT
Tagtggaaatttttgaatttgttttttgtggttttatttgagtatttttg
ttggTAAGATGAAAGATAAAAGCTTTCTTGCACTTCCACGGGAGGAGACG
CAATCACCTGGTAGTCATCGCTCGTCATCAAGCTCAAGCGAAAGTCAAAT
CAAATACGAAAATGATCGATTGAAAAAAGCGCTTGCTCAAAGCTCATCGA
ATGCAAAGAAGTGGGAAACTGAATTTCAAACATTGAAAAACAATAACGCC
CGCTTGACGGCCGCCCTACAAGAGAGCGCGGTCAACGTGGAGAAATGGAA
AGAACAACTGAATAATTATAAAGAAGACAACCAAAGACTCAGAAAAAAGC
TGGCGGCCAGTGCTGGTTCTGGCGGTGCTAAATCAAATTCGACGGAAGTA
TCCGATTTAGAAAAACGGGTTTCGGAATtagaaaataaactaaaacggAA
AGAAGAGGAGTTATCTCGCATAACGCAGCACAGTACGGATGAATTACATG
TGTTACGGGAAAAGAATGCGCAGTTATCTAAAAAACTTAAAACACACGAA
GATAAATTATCAGATGACGTAAACAACAATCGCAAACAAAACGAAGAAAT
ACGAAACTACGAAGGCAAATTGAAACAATTCAGCGAAACAAGTCATGAAA
TGGAGTCGAAGTTACGAGAACTTTTTACGCTACAACAAAAAATGAATGGT
TTGATGAAAAGTTGAAATTCTTTaacgatGTTAAATATCCCGATAAACCG
ACATTGGATCCCGGCGGTCTGGCTCGACGCTTCGATCCGACTGTTcgata
ttacgacccgacctTTTGACATCACGACCtgaccctttgatattacgacc
cgaccctttgatattacgacccgaccctttgatattacgacctgaccttt
tgacattacgacccgaccctttgatattacgacccggCGGTTTGACCCGA
CGACCTGaccttttgacattacgacccgacggtttgacccgacgatctga
cagtttgacattacggcccgacgttttgattttgacaccgATCTGACTTT
AtagttgaaacaacgttgtgtgccagctgggataagAATTTGAAACTTCT
ACTTTTCATATTGGATTTGACTCTCCAGTGCTCTAGTATTTCTTTctgtt
aggcgagaccaatttgatttgttgttttacgggcgcGACCGATCCAGCTT
TAGCTGCAAACGAAaacataataatattgaattttctGTACCACAAATAA
TGGTCATTAAAAGAATCTAGAATCATGAATTTCTATGTacgaaagatttt
attacaaactccatcaaagatgaatgatgaattttcgatcaatattattt
gaaaatattacttaaagCCTGGTTACCttccttgattaatgaaaatctta
tttttattttaccgaccgaccgactcatattttgctaacgatctgcccgt
agaacaacaaattaaattagtCTCGCCTTATATGTAAAATATGATTCTcg
atattttctcaaattttatttttaatactTTTATCATAAAATTATGACAA
CAATAATAtaaaactttatttattttatgCTCACAGAGGaaaggttttta
gaattttttattttttagattttaacgTGTGTAAGTATATGTGAAAACTT
TGTTCTTTGTTTACAAAGAGATAACCATTGACGGATTTTATTTAGGCAAA
AATTAGCTGCACgccaatacactcttctcgagatgcataaatttattgtt
gtcctcgttttcaaacagatttcattgctatgaaattatacatttaaa
Run BLAST on NCBI

transcript from alignment at sc0000084:335433..345122-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008315 ID=TCONS_00008315|Name=TCONS_00008315|organism=Clytia hemisphaerica|type=transcript|length=9690bp|location=Sequence derived from alignment at sc0000084:335433..345122- (Clytia hemisphaerica)
TATAGAACACAAATCACATTTCTATCATCAAATAGACATAGCTGTGTCGT
TTAGCAAGACTGTCTCTAATACAGTTAGTTGAAAAAAAGATCTTTGATCT
TAGTGGAAATTTTTGAATTTGTTTTTTGTGGTTTTATTTGAGTATTTTTG
TTGGTAAGATGAAAGATAAAAGCTTTCTTGCACTTCCACGGGTAAGGTTC
TTGAATTTCTCTCCATGCGTTTCATTTAGGGTTCTCTGTCATTCTAAGTT
TAGCTCTTTCCATTGCCAAGATTCGTAGAAGGCGATTAGTGGAGAGAGAG
TTGACCTCGCTACGTGTTCAATTTTCATTGGATTCTTACCCAAAACCTTC
CGGTCAGTAGACAATCACAATAATCATTTGATCACGTTCTTAATGTCGGA
TTTGTATACATTGCTGGGGACAATTTCAATCAATGTAGTTTTTTGGACCC
AGTATAATTTTCCCGAAAACTTGTTCACTAAACTAAACTAAGCTTGGGAA
AGGTTGAAGATGCAACTCTAGCCGTTTCGGGCTTCAAACTCAATGTTTGT
AATCGGTAACAAATAAAACAAAATTTCGACCCTATGCAACCACTTTCCCA
ATTTCTACAGACTTTTGTTTGCATTCTGATTGGATCTTTTCGAAGATGCT
GTGTTGGTTGAAAAAACTGTGTAAAGAAGATCTCGGGTTGGTTTTGTATG
TGTATTGAAGTGAAGGGTTGAAAGCGAATCTAGATTTTCTACAAAACGGT
CAACATTTTACCATCACCCGGCAACGTATTAGCCAAATATTTGAATGTTG
AGAGGTTAAAAAAACTTATGTTATTTGAGAGTGTGTTTGTGATATCACCT
CACCTAAGAAATGATCGCAATTTTGGTTATAATAAAGCACTGTTGTTTGC
TTTCAAGATCTGAGGACAACATTTGTAGGGAAAATGGTATATTTGTTAAA
CATTTTTCATGTCCTTTTTCTATGTTTGTTTCAATTTCGTTTGAAGACAC
TGTAAGTTGCATAGCTAGAAGTGCAATGGAATGAAGGGAAGCGCAAACGA
TGTAGTATATATCCTGCACTGACACAGCTCCATTATTACCTTCTCTCTAT
GTACAGGTCGATTTGNGTAATTTCTCCTTTGCATAGTTCGATCATTACTT
TGGCTCTACGTACAGGTCGATTTCTAACCATTTTTTCGCTTTCATTATGT
ACAGGAGGAGACGCAATCACCTGGTAGTCATCGCTCGTCATCAAGCTCAA
GCGAAAGTCAAATCAAATACGAAAATGATCGATTGAAAAAAGCGCTTGCT
CAAAGGTAACATCTCTTCCCCTTCTTCATAATCGCCGAGCAGAATCTAAT
ACTCTGCGCATGATACGCATTCACTCTAAAGGCCATGGATCCGTAAGAGA
AACTGCCTAGGTTGGCGAACCGCTTGAATCCTTTTCATACAGTGTTGGGA
TGAATTTTTGGATTCTAAAAAGTAGGTGGTGCTGAGCTGATGAGAGATTT
CAGGTGGGGTAATCCTATGCAGGCGAGGATGACCTTTTTCAGGTGTGGGT
TTAGAGGTCTTGTCTACTAATAATAGCTCTGATTTTCTGATTTCATAAGA
CTTCAGCCTGAAATTCAAGGGACCAGTAATCAAAATCTTTGAATATAAAT
AAAGTAGTTAGTATACCTTAATGTGGAAAATTTGTGAGCCAAGAAGCGAT
TGAAAATATGCGGTGAAATAGAAGAATATCTTTTGTTTTACAGCTCATCG
AATGCAAAGAAGTGGGAAACTGAATTTCAAACATTGAAAAACAATAACGC
CCGCTTGACGGCCGCCCTACAAGAGAGCGCGGTCAACGTGGAGAAATGGA
AAGAACAACTGAATAATTATAAAGAAGACAACCAAAGACTCAGAAAAAAG
GTAAAGGACGATTGACTTGCCAATCGGTTGGAGGATATTGTACTCAGCTT
GGTCATTTCTATTTTATGTTAAGAAGTTTAGATAACAGTTTTAACTCAAA
AGACACATCATTACATACTGTGTGCCCCTTGTTTTGATGAGAGCCCCATC
GCAAAGGAGGACTGAAGCAAAAATTTTACCTGCTTTTATCTGTGGACTGA
GAGATTTTGGACATGATGAATGGGAGAGCTCGTAGTTTTAATATTTCGGG
AGTTTTTAAGATACAAACTAAACCGAAAATGAAGTTCTTTATGAATCTTG
CTCTCCAATCCTCAAAAGCCAAGTCTTTTCTATTCAGTGTTAAATTTGAC
TTGATTTTTTGGACCTACCTCCGGGTACCCCGGTGGAGGTTCTATAAATT
AACCCATGTCCGTTCGTTCGTCTGTTCGTTCGTCCGTCCGTCCGTCTGTT
ACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTCTGATTTTTTGCACA
ATGATGCAAAACGGCAATGCCCAGAACGTGACGGAGCCCGATTTTTGAGA
AAAAATTTATTTGGGCGAATTTGAGCCAAAAACTACCTAAAATTAGGGTT
TTTTAGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGATTTTTTGTA
CAAAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAAAACGGATTTTCGTATTTTTGGGGAAATTCC
CTTTAACCAAATAAGAAAATATAGCTTTTCTCAATGTTGACTCGTTATTT
TTTTCTGATTTTTTGCACAACGACGCAAAATGGCAATGCCTAAAATGTGT
CGGAGCCTGATTTTCGAAAAAAAATATATTTGGGCAAATTTGGGCAAAAA
ACTGCCTAAAAATAAGGTTTTTTGGACTTTGGTCAAAATCCTGTCATTAC
TTTTTTCTGATTTTTTGTACAAAGATGGAGGGCAAGATTCTCTAAAGAAT
GGCTGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTCCCTTTAACCAAATATGAAAATATA
GCTTTTCTCAATGTTGACTCATAATTTTTTTCTGATTTTTTGCACAATGA
TGCAAAATGGCAATTCCCAAAATGTGAAGGAGGCAGATTTTTAAGGAAAT
TTTTTTTGGGCAAATTTGGGCCAAAAACAGCTTAAAAGGTTTAAGTGATT
TTCGTATTTGGGGAAATTCCTTTATACCATTTTACATTATTCAACACACA
AGCTTTATTTTTCTATTCTGAATTTTTGTACATATATTGTCACTTTTTTC
TTATTTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCT
TGTTTTCATTTCAGCTGGCGGCCAGTGCTGGTTCTGGCGGTGCTAAATCA
AATTCGACGGAAGTATCCGATTTAGAAAAACGGGTTTCGGAATTAGAAAA
TAAACTAAAACGGAAAGAAGAGGTTTGTCTCTTTTCCCTTTGATATTCCA
GCAAGTTATTTGATTTTAGTTGTAAAGAGTTCAACGATTTGCATTCGCAT
TGTACTTGTTTTTCCCCATAAGTATAACGTTAAGCATATACAGGCTCAGT
TTTTGGTACCTAAACAATGGCTGACCCTGACTCAAATAAAGATTTTTACC
TCAAATTTAATTTCCCCTAAGCATTAACGTGTATTTGCCACGCCTGAGTT
TCGTAATTAATTCGTTTGTACTTTTTCACGCGTAGCGTCAAAAATATTTA
TTTATTGCCATGCGTAGACACTTGCTTATTTAAAAAAAACATGCTCTCTC
AAGTTCTTTAACGGTTTAAAATCATTTTCATCTCAACCGGTGTGACCGAA
CTGACTGAGTGGCGTTGTGCCGAAATACTTGACAAAACGCCGTGACAAAA
GCGGAAACCATCGTGGAGACAGTTTAGTGAGTGTTTGCTCGTTGGAGGTG
TCCGCCTTTCGGATGTTTTACTGTATTTATTTTCTTCCAATTTTAGGAGT
TATCTCGCATAACGCAGCACAGTACGGATGAATTACATGTGTTACGGGAA
AAGAATGCGCAGTTATCTAAAAAACTTAAAGTAAGTGTTTTTTTCTTACA
TGCTATCTGCGTTATATATCTGGGAATGAAAACGGTCAGTGGAAATCCGT
AACATGATTGGTAGATTAAGTTAATTGGATTTTTTTGGCGTGGGTTTAAT
TTGGCGATTGAACAAAATGAGATTTTAGGTGGGAATCCAATTTGGCGAAT
GATCAATTTTCTAGAATTTGGTTGGTATTTCACTACTACCAAAATTAATC
CAGGGTATATACCAATATGGTATATATAATATATAATTTCGAACACACTT
ATCAATAAAACCAAAGCAATTAAAAGTTAAGAAGTTTGCAGAAGAAGATA
CATACGTTAGTCAAGATAACCTCATTTTTCAATGAGGCCATTATGGAAGC
AAACATTCGATTCTGTAAAGACGATCGCTTACGCAAATCGAACGTTTACT
TCCATAATGGTGGAAGTTATGAGTGATAGTTAAATAATCTATAAGGCCTG
GCCGTTTGACTGAAGTCCCAAGAAGATGATTGAAAACAGTCTGAAAATCC
TGGATTACTAGGCTCTCCATGTAAAATATCGAATCTATCTGAATTTCAAG
GAGATTTGTTTTCACCTTTCAGACACACGAAGATAAATTATCAGATGACG
TAAACAACAATCGCAAACAAAACGAAGAAATACGAAACTACGAAGGCAAA
TTGAAACAATTCAGCGAAACAAGTCATGAAATGGAGTCGAAGTTACGAGA
ACTTTTTACGCTACAACAAAAAATGAATGGTTTGATGAAAAGTTGAAATT
CTTTGTGAGTTTCTCATTCACTCTCTTCTCTGTTTATGTTTCACTTCATG
TTTCAGATGTGTTCAGCTAGATAATTCATGATAAACATGACGTAATGTTT
TCTATTATTTTGGTAGTAGTGGCATTTCCGCTACTTGCCAAAACCGGGGT
GGTTCCGTAGAAAGGATTACGTAATGAATATCATTCCATGAATAAGAGAG
GACCTGTTTAGCCCCAGTTTTTCTGTTCAATTTTAATATTTTCTCAAATT
TGTCGATTTCAGGCAAATCTTTAGATTATAAAACTATGAGGGGACTAGAA
ACGAAGGACAGACAATCTTTCCAACACATAACAGTGTATAAATGATTCTT
CTTTTTAAAGAAAGTTCAATTTATCCACTTTTTAAGTATGTAATGAAAAT
ATATTATATAGTATTTTACCATAGTAGAGTTAGACCAAAAAAATAGTGTA
CCATAGTCTCAAAAGAAATTGTATATAATTAAAATATGTTATATCATAAA
CTCAAAGTGTGTATTATTGTTTTAGTGTTCTAGCTTTGCCGAGATCAGAT
AATTTTTGTTTTACATTTAAACTTAGCAAATTTTAACTTTGTCTGCTAAT
ATCTACGTCATTTTACTTGAACAAGTTTGCCCTACAATTTTCAAAGCTGT
ATGAAAACGAATGTAATTTTTCTTTAATGCACTCTTTGTTGTTTTGTCTT
CCGCTGAGATGAAATTTGAAATTTCTCTAAAATCTCAGCTGGCACACAAC
GTTGTTTCAACGTTCATCTAATATTCATAACGTCCATATAACGTTGAATG
AACGTTGAAAAGATCGGAAGAGCGGTTCAGCAGGAATGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTAATGTCAAA
CTGCCAGATCGTCGGGGCGAACCGTCGGGTCGTAATGTCAAACTGCCAGA
TCGTCGGGTCGAACCGCCGGGTCGTAATCTCAAAAGGTCAGGTCGTCGGG
TCGAACCGTCGGGTCGTAATGTCAAAGGGTCAGGTCGTAATATCAAAGGG
TCAGGTCGTAATATCAAAAGGTCGGGTCGTGATGTCGAACGGTCGGGTCG
TAGCGTCGAACCAGACTGCCGGGTTAAACTGCCGGGATACAATGCCGGAT
TATCGGGTTTATCGGGCTTATCAGATTAGTTAAAATCTCGTTCCGCAGAA
TACTATAAACTAAATACTATAATACTAAGAACAAAAGTGGAAGCAAAATG
GAGGCGAAATAATTTGAGCAGTGAAATGTTTATATTTTTACCACTGATTA
AATATACTTTCAGGTGTCTATAACATGTTTATATTATCAAAATCATGAAG
TGTTCTTATTCAACTATCTTTGTGCANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATTTTGAACACTCAAGAGG
AGAAAGAGATTTCTATTTTCTCTCGAAAGTGTGCATATGGATCTGAGAAG
TGAAATGAAACTCATCAACAAGAGACAAGAAGGACTTCATCTCTCGAAAG
TGTGCATATATGGATCTGAGAAGTGAATGAAACTCATCAAGACAAGAAAG
CCTTAATTTCAAAGAAGATTTTCATGGTTCTTACTTCAAAATATGGGACA
TTTTTGTTCATCCAACGACTTGAAAAATGAACTCTGGAGACTGTAGTCTA
CATAACTTCAGAATACTTCGATAGAATCATGGAACGCGGATATTATTTTC
TCGATAAAAGCACTGTATCATGAGATTTTGCACGAACCAAATAAAATGAA
GTGAAAAGTAACTCTACGATCAACGATGAACAAAAAACTCTGGTTCTGAG
CATCATATTGTACTGATTTGGAATTTTATGAAATAATAATGTTGAGGAAG
TAGCAGTAGGACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTGTCGCAAAGTATTTTTCGGTTTGTT
TAGATTACGAAAACGAAAGTGAAAATCCCGTTCGACCAATCAAATTGTAA
ACTTTTATCGCGCTCGACCAATCAAGTTCCAGACACGTGACCATAATATT
TTGATTTGCGTAGTATTGGATTATCCCACTGACCTTTATATAACCCTGGA
CCAAACAATATCTGCCATCTTTGATTGGAGTTTTTTAGAATTGGTACCCA
AGGAGAAGCCATTGCAATGCTAAAAATNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCGACATTAGG
GTACCAATTTTCAAAAAACTCCGATCAAAGATTTTGCTTGGCTGGGATTG
AGAAGCTTTGTCCAGGGTTATATAAAGGTCAGTGGATTATCCCTTTAAAA
AATGATATTTTACAGAACGATGTTAAATATCCCGATAAACCGACATTGGA
TCCCGGCGGTCTGGCTCGACGCTTCGATCCGACTGTTCGATATTACGACC
CGACCTTTTGACATCACGACCTGACCCTTTGATATTACGACCCGACCCTT
TGATATTACGACCCGACCCTTTGATATTACGACCTGACCTTTTGACATTA
CGACCCGACCCTTTGATATTACGACCCGGCGGTTTGACCCGACGACCTGA
CCTTTTGACATTACGACCCGACGGTTTGACCCGACGATCTGACAGTTTGA
CATTACGGCCCGACGTTTTGATTTTGACACCGATCTGACTTTATAGTTGA
AACAACGTTGTGTGCCAGCTGGGATAAGAATTTGAAACTTCTACTTTTCA
TATTGGATTTGACTCTCCAGTGCTCTAGTATTTCTTTCTGTTAGGCGAGA
CCAATTTGATTTGTTGTTTTACGGGCGCGACCGATCCAGCTTTAGCTGCA
AACGAAAACATAATAATATTGAATTTTCTGTACCACAAATAATGGTCATT
AAAAGAATCTAGAATCATGAATTTCTATGTACGAAAGATTTTATTACAAA
CTCCATCAAAGATGAATGATGAATTTTCGATCAATATTATTTGAAAATAT
TACTTAAAGCCTGGTTACCTTCCTTGATTAATGAAAATCTTATTTTTATT
TTACCGACCGACCGACTCATATTTTGCTAACGATCTGCCCGTAGAACAAC
AAATTAAATTAGTCTCGCCTTATATGTAAAATATGATTCTCGATATTTTC
TCAAATTTTATTTTTAATACTTTTATCATAAAATTATGACAACAATAATA
TAAAACTTTATTTATTTTATGCTCACAGAGGAAAGGTTTTTAGAATTTTT
TATTTTTTAGATTTTAACGTGTGTAAGTATATGTGAAAACTTTGTTCTTT
GTTTACAAAGAGATAACCATTGACGGATTTTATTTAGGCAAAAATTAGCT
GCACGCCAATACACTCTTCTCGAGATGCATAAATTTATTGTTGTCCTCGT
TTTCAAACAGATTTCATTGCTATGAAATTATACATTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004671XLOC_004671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008315-exon-sc0000084-1575043694:344932..345122TCONS_00008315-exon-sc0000084-1575043694:344932..345122Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1575043694:343818..343918TCONS_00008315-exon-sc0000084-1575043694:343818..343918Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1575043694:343223..343379TCONS_00008315-exon-sc0000084-1575043694:343223..343379Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1575043694:341351..341458TCONS_00008315-exon-sc0000084-1575043694:341351..341458Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1575043694:340743..340826TCONS_00008315-exon-sc0000084-1575043694:340743..340826Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1575043694:339969..340150TCONS_00008315-exon-sc0000084-1575043694:339969..340150Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1575043694:335433..336507TCONS_00008315-exon-sc0000084-1575043694:335433..336507Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1510915933:344932..345122TCONS_00008315-exon-sc0000084-1510915933:344932..345122Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1510915933:343818..343918TCONS_00008315-exon-sc0000084-1510915933:343818..343918Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1510915933:343223..343379TCONS_00008315-exon-sc0000084-1510915933:343223..343379Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1510915933:341351..341458TCONS_00008315-exon-sc0000084-1510915933:341351..341458Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1510915933:340743..340826TCONS_00008315-exon-sc0000084-1510915933:340743..340826Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1510915933:339969..340150TCONS_00008315-exon-sc0000084-1510915933:339969..340150Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1510915933:335433..336507TCONS_00008315-exon-sc0000084-1510915933:335433..336507Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1491911889:344932..345122TCONS_00008315-exon-sc0000084-1491911889:344932..345122Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1491911889:343818..343918TCONS_00008315-exon-sc0000084-1491911889:343818..343918Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1491911889:343223..343379TCONS_00008315-exon-sc0000084-1491911889:343223..343379Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1491911889:341351..341458TCONS_00008315-exon-sc0000084-1491911889:341351..341458Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1491911889:340743..340826TCONS_00008315-exon-sc0000084-1491911889:340743..340826Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1491911889:339969..340150TCONS_00008315-exon-sc0000084-1491911889:339969..340150Clytia hemisphaericaexon
TCONS_00008315-exon-sc0000084-1491911889:335433..336507TCONS_00008315-exon-sc0000084-1491911889:335433..336507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:335433..345122 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0876811	0	0	0.08816	13.977	7.5129	18.919	20.0836	8.20413	22.5379	12.2646	29.5393	0.613859	0.634963	0	0	0.212835	0.117409	1.86175	1.32402	0.882547	0.734535	1.18558	0.707251	0.342686	0.663727	1.6912	1.0983	0.816633	1.2545
Blast
[Close]
BLAST of TCONS_00008315 vs. Swiss-Prot (Human)
Match: HOME2 (Homer protein homolog 2 OS=Homo sapiens GN=HOMER2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.909e-17
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 3 
Query:  249 IKYENDRLKKALAQSSSNAKKWETEFQTLKNNNARLTAALQESAVNVEKWKEQLNNYKEDNQRLR 443
            +K END+LK AL QS++N KKWE E QTL+ +NARLT ALQESA +VE+WK Q +  +++N RLR
Sbjct:  162 LKSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSICRDENDRLR 226
The following BLAST results are available for this feature:
BLAST of TCONS_00008315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HOME27.909e-1760.00Homer protein homolog 2 OS=Homo sapiens GN=HOMER2 ... [more]
back to top