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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008314 ID=TCONS_00008314|Name=TCONS_00008314|organism=Clytia hemisphaerica|type=transcript|length=643bp
cttttttcatgaatcaaaatatttaagaagaaattctgaaaaaagtgGGT
CTTGAAAATTGGAGAATATTTTCGAAACTAGATGCTATACGCCAAAATCA
CTCCGGTTCGaagattcaagatggcggagtACTTTAAGAAAATTCCTTAC
AAGCAAGATTTACCACCACCTGGTGGATATGCTGCTTATGTCTACAAAAG
TCAAGTGAAGCCAAGAGGTCCTTCTGGTGTAGCTATAATGGCTGGAGGTT
TAGCAGTGATGGGAATTGGATTTTACTTCGtctcaaaaggaaatcaaaac
aGGAGggaaCTTGTTAGGGAACAGAAAATGGCTCGAATTCACTTACTACC
CTTATTACAAGCCGAGCAAGACAGATTAAATCTTAAACGATTGAAAGAAA
ACTTGGAAACAGAAAAGGCAATCATGAAAGATGTTGAAGGTTGGGATCTC
TCTCAAAGTGTTTACAATGTGTATAATACTGACCGATGGGTACCACCACG
TGATTTCCAACTAGAAAAATtgtaatttaataaaatttgtaattattttt
taagtgtgatatttttgttttagttgcaaaataaatttgaaaacataccc
ttacagtgtgTCTAGCTAAAAGAAAACCCTTGCATtccagTGC Run BLAST on NCBI protein sequence of TCONS_00008314-protein >TCONS_00008314-protein ID=TCONS_00008314-protein|Name=TCONS_00008314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MLYAKITPVRRFKMAEYFKKIPYKQDLPPPGGYAAYVYKSQVKPRGPSGV
AIMAGGLAVMGIGFYFVSKGNQNRRELVREQKMARIHLLPLLQAEQDRLN
LKRLKENLETEKAIMKDVEGWDLSQSVYNVYNTDRWVPPRDFQLEKL Run BLAST on NCBI transcript from alignment at sc0000084:258358..262953- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008314 ID=TCONS_00008314|Name=TCONS_00008314|organism=Clytia hemisphaerica|type=transcript|length=4596bp|location=Sequence derived from alignment at sc0000084:258358..262953- (Clytia hemisphaerica)
CTTTTTTCATGAATCAAAATATTTAAGAAGAAATTCTGAAAAAAGTGGGT
CTTGAAAATTGGAGAATATTTTCGAAACTAGATGCTATACGCCAAAATCA
CTCCGGTTCGAAGATTCAAGATGGCGGAGTACTTTAAGAAAATTCCTTAC
AAGCAAGATTTACCACCACCTGGTGGATATGCTGCTTATGTCTACAAAAG
TCAAGTGAAGCCAAGAGGTCCTTCTGGTGTAGCTATAATGGCTGGAGGTT
TAGCAGTGATGGGAATTGGATTTTACTTCGTCTCAAAAGGAAATCAAAAC
AGGAGGTACTATTTCTATTCTATTATTTCTTTTTTGAAAATTTTGTCCCT
GGCCTGGGGGGGGGGGGGGGGGTTATTTTCATTTTGTCTGAGCAAAAATC
AAAAATCAACCTTTTAAGGGAGAAAAATTAACGTTTTTATGACCCTTACA
GAGACTTTTCTGTCATTCAATTTTGGTCTAGATTTCCTAAAATTATGACC
CGTCACGACCCGTCTTTGAGAGGGGGGAATTTTGATTCCACGAATTTTGA
ACCCCCCCAGCGGTTTACGTGAATGCGTGAATGGGCATTTTCAGTTGCAT
GAATAGACCTTTTCGCCTTTCCGTCCGCCATCTTGAATTATATGCAAAAA
TACAGGAACGAAAATGCCGAGGTTGGATTTAGTTGGAATGTATGCAAAAC
ATATGCAAGTTTACACAAAGATTAAAAAGACAACAAAGCATCTTATAAAT
AAATATTATAATNAGATTACACTTTAATATAATGCCAATTATGCATGTAT
ATAAGTTTTTAATTCATACTTTCTTTTTGCATATGTTTTGCATACTTTCT
AAGGGAATTTCACCATGGCAATTCGGCCACCATAATTTTTGCATACAATT
CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATTT
GTTCTTAAAGACATTGCATATTCTGTTTTCATGCCATAAAAAAATTCCAC
GAAGACGGAGTACACACATCAAACTTTCAAAACACTCAAACTGAAACCAG
TAATTACAGTATGACGTCACACTTTCTCAATGTTTTGATTTGATCATTTC
GCGGCTCTATTCCCAGGAGAATAATTTGCCGTCAGCCGAATAAGGATTGT
TTTTTACCTTCGCGGGTGATTTTTCAGTTTGAGTTTCTGTCTNAAAGATT
GGAGAATGTACTAACCCCCCCCAGATGGAAATTCTACAGGGTTAACAGCC
CGTTTGTTGCAGTCCCACTAAAGAGTCATGAAAATTCCCTGAAAATCTCG
ATGAGTGATCGGCTCCTTCGGCTCCCGTATGTTGGAAACGATCTAAAATC
ATTTGTTTAAGAACTTAATACCTTGACAGGGTAAATAAAATTATACAGAT
CATGGCAAATAAAATTATGAAAATATTAATCATTGTTTAAAATTTGTTAA
AGCTTGAGTGGCCGAGTGGATAAGACGGTGCGCTGGTATGTATGGGAATG
ACGTTTTTGAGAGTTTGAATCCTATACGGTGCGTTGAAATTTGTGTTACT
ATGTCAGCATTGGCCAAACTTTTTCTGGTTTTATGAGCTCTTATTGATTT
TTTTTAAAGTTCCTGTTATAATTTTAAGAAACAAAAATTTTGACTACAGT
ACAGTTTGACTCAAGTACAGTATTTCAAAATGGATCAGGCTGGTTAGCGG
TTAAGAGTCAAGAGTCATGACTTTCCCTTCTCTTGAAGATCCAGTATTCC
AAAACTTTCAACTAAAAAAAATGCATGAAAATCGACTTTCGTCTTTTTTA
TTATCTTACAATCACTTTTTTCAGAACCACAAGTGAAAAAAAAGGAAAAC
TATAACTGCTAAAAAATTATTGACAGGTCTAAAAAGTGATTGACAGGTGC
GGGTTTGCTCGCGCGGGTTAGAAATTCCCGTGAGCAATCTCGTTATTTAT
CACAATGTGGCGAAAAGGTCTATGCGAGTAAATTGGAAAAAATTTGCGTG
AATGCATGAATTTTGAAAAAAAAATTCTGTGATTGCGTGAATTGATGGGT
GAAGGCTTCTTCATAAAGACGAAAGACATGTATCTATTTTTCGGATCCGG
TATGCGGGAATAGTGTCAGGACCTGCAGGCGACCTGGTAGGGTTGGGTAT
GGGTGTGGTTTGGGTGTGGTTATATACGTATCAGATTGGCTAGGAATTGG
GTTATTATCAGTTAGGGTTAGGGTTGGAGCTCGAAACAAGCACTCTTTTG
TGATTTTCTCTTAATACAGTTTGGTCTGCAGTTTGTACAATGTAAATAGC
CGTAAGAAGCGTTATCCTGGCATGAATCCGTGGCGCAGTGGATAAGGCAA
TGGGTTTCAAAACATCGGAACTTTGCATTTAGTGGGTTCGAATCCCACCG
GTGAAGTCATTCAGTAAGTTAGAAAACATAGAAAATAACTCACAAAGAAC
CAGAAAGTCAGAAAAACTACGAACAAGAGACTGGAAAGTACGAAATAAGT
CCAGATCTGTCTTTCGTCTTTGTGAAGAAGCCACAACCGAATGGCTGCTG
GGGGGCCTCCTTGAAGTGAATACCCAACACCAATTTAGCTCCACCCCCGC
CCTTTGCAATCATATTCTATCATCTCTCATCTCTTTATTTTTAGATGTAG
ATTCGTTTTGGCTCAAAATTATTCACAAGCTATAAAGGGGGGGTTTGTAC
TTTTACGGTGTGACGGGATTGGCCCTTTTTTAGTACGGTATTACGGGATT
ATACGAGAAAAAGACGGGAAAACGGTATTTTAAAATCAGACGGTGACTGT
ATTTGGCCTTATTTTTTGTCATTATGCCGGTATTTGAACCTGTACAAACT
GGTGTGACTGTGTTATTATTTTTTTAAATTTTCGGGATTCCGGGATTCAG
CAAATATTTTGACAAGAAAACGGTATTTTGAACCCCTACAAACCCCCCTA
TAAATGCAGTAGATGCTATTTCAATGTTAAGTTAAAGGAAAAAAGAAAAA
AAATTTGAAGATAATAATTGTTTTGATTTTTTTTCAGGGAACTTGTTAGG
GAACAGAAAATGGCTCGAATTCACTTACTACCCTTATTACAAGCCGAGCA
AGACAGATTGTAAGCAATATTTTATTTTGTTGAATTAAATGGTGGATAAC
TAAAGTGTATCCAGATATAATTGGCAGTGGAAACAAGAATGCCTGTAACT
TTTGAAATGTCTGATATAATTTCGAAAAATTTTTTTGTTTGTTTTAGAGA
ATCGAAAGCACTATATTTGAATGTATTTTTGGTTGAAAAATTCGCGATTN
AGAATCGAAAGCACTATAATTGAATATATTTTTGGTTGAAAAATTCGCGA
TTTTTAGCGGTTAAATTTGCGATTGCAAAAATTGAGCTTTATTTCTACTT
GTGCTACATAACGTTTATTTTTACACCAGTGGTAGTTAAACCCTAGGTTA
AGAAGGTTGTGAAATTTCAAGGCAAACTGAAAAGTCTTTTGGAAGATATG
GGACCCGANCAACCTTAGGTTAAGAAGGTTGTGAAATTTCAAGGCAAACT
GAAAAGTCTTTCGGAAGATATGGGACCCGAAATACCCCTTGCTAGCACTT
TTTTGTGAAACATCAAATCTCTAAATTTAAAAAAAACGGGGGTAGTGATG
ATGAAACAGTATTTCAATCATAACACTTTTTACGATCTTTTTACGATAAT
GACCTCATAGTCAAACTGTGCTTAGTGTTTTGGAAATTAGAAAATTTCTA
ACTACTTAAAAATAACAAAGGCAATATAAGTTCAATATGCTTATCGTTTC
AATAAAAACAATCATACCAATACACCTTTCCCAAGTTTATCGATTTTTTT
CGAACTCTCCAGTTTGAAACGAGAACTTGATATTTTTGAAGCGTTTGGTG
ATACAAAGTCATTCTGTAAATTTGAGATCAAAAGCTTTTTCCGTTCCTTT
TTTATGGTTGTTTTAATTCCTTTGTTTTTACAGTCAAACCTCTAAAAATA
AAAATTGCAAACCTAAATATCTTGAACAAGTAGCCAGTAAAATTAGTTCT
ACTAAGGACTATGGAACCGGAATCTTTTGGTTGAATTTCAATTTTTATCC
CTTTAATACTATATATCTTGCATCAATCTGTATTTCAAATACACACATCA
CAATTCAAACATATCAAATTTCAACAATGATCAATTTAGGCTCATAAGGC
TTTGTAGCTAAGTTTTTTATATATGAAAGTGAGATCTTTTCAAAACTTAA
CTTTTATTATTTTATCTTGGTCTTTTTCAGAAATCTTAAACGATTGAAAG
AAAACTTGGAAACAGAAAAGGCAATCATGAAAGATGTTGAAGGTTGGGAT
CTCTCTCAAAGTGTTTACAATGTGTATAATACTGACCGATGGGTACCACC
ACGTGATTTCCAACTAGAAAAATTGTAATTTAATAAAATTTGTAATTATT
TTTTAAGTGTGATATTTTTGTTTTAGTTGCAAAATAAATTTGAAAACATA
CCCTTACAGTGTGTCTAGCTAAAAGAAAACCCTTGCATTCCAGTGC Coding sequence (CDS) from alignment at sc0000084:258358..262953- >TCONS_00008314 ID=TCONS_00008314|Name=TCONS_00008314|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at sc0000084:258358..262953- (Clytia hemisphaerica)
AAATCTTAAACGATTGAAAGAAAACTTGGAAACAGAAAAGGCAATCATGA
AAGATGTTGAAGGTTGGGATCTCTCTCAAAGTGTTTACAATGTGTATAAT
ACTGACCGATGGGTACCACCACGTGATTTCCAACTAGAAAAATTGTAAGG
AACTTGTTAGGGAACAGAAAATGGCTCGAATTCACTTACTACCCTTATTA
CAAGCCGAGCAAGACAGATTATGCTATACGCCAAAATCACTCCGGTTCGA
AGATTCAAGATGGCGGAGTACTTTAAGAAAATTCCTTACAAGCAAGATTT
ACCACCACCTGGTGGATATGCTGCTTATGTCTACAAAAGTCAAGTGAAGC
CAAGAGGTCCTTCTGGTGTAGCTATAATGGCTGGAGGTTTAGCAGTGATG
GGAATTGGATTTTACTTCGTCTCAAAAGGAAATCAAAACAGGAGAAATCT
TAAACGATTGAAAGAAAACTTGGAAACAGAAAAGGCAATCATGAAAGATG
TTGAAGGTTGGGATCTCTCTCAAAGTGTTTACAATGTGTATAATACTGAC
CGATGGGTACCACCACGTGATTTCCAACTAGAAAAATTGTAAGGAACTTG
TTAGGGAACAGAAAATGGCTCGAATTCACTTACTACCCTTATTACAAGCC
GAGCAAGACAGATTATGCTATACGCCAAAATCACTCCGGTTCGAAGATTC
AAGATGGCGGAGTACTTTAAGAAAATTCCTTACAAGCAAGATTTACCACC
ACCTGGTGGATATGCTGCTTATGTCTACAAAAGTCAAGTGAAGCCAAGAG
GTCCTTCTGGTGTAGCTATAATGGCTGGAGGTTTAGCAGTGATGGGAATT
GGATTTTACTTCGTCTCAAAAGGAAATCAAAACAGGAGAAATCTTAAACG
ATTGAAAGAAAACTTGGAAACAGAAAAGGCAATCATGAAAGATGTTGAAG
GTTGGGATCTCTCTCAAAGTGTTTACAATGTGTATAATACTGACCGATGG
GTACCACCACGTGATTTCCAACTAGAAAAATTGTAAGGAACTTGTTAGGG
AACAGAAAATGGCTCGAATTCACTTACTACCCTTATTACAAGCCGAGCAA
GACAGATTATGCTATACGCCAAAATCACTCCGGTTCGAAGATTCAAGATG
GCGGAGTACTTTAAGAAAATTCCTTACAAGCAAGATTTACCACCACCTGG
TGGATATGCTGCTTATGTCTACAAAAGTCAAGTGAAGCCAAGAGGTCCTT
CTGGTGTAGCTATAATGGCTGGAGGTTTAGCAGTGATGGGAATTGGATTT
TACTTCGTCTCAAAAGGAAATCAAAACAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008314-exon-sc0000084-1575043694:262649..262953 | TCONS_00008314-exon-sc0000084-1575043694:262649..262953 | Clytia hemisphaerica | exon |
| TCONS_00008314-exon-sc0000084-1575043694:259795..259866 | TCONS_00008314-exon-sc0000084-1575043694:259795..259866 | Clytia hemisphaerica | exon |
| TCONS_00008314-exon-sc0000084-1575043694:258358..258623 | TCONS_00008314-exon-sc0000084-1575043694:258358..258623 | Clytia hemisphaerica | exon |
| TCONS_00008314-exon-sc0000084-1510915933:262649..262953 | TCONS_00008314-exon-sc0000084-1510915933:262649..262953 | Clytia hemisphaerica | exon |
| TCONS_00008314-exon-sc0000084-1510915933:259795..259866 | TCONS_00008314-exon-sc0000084-1510915933:259795..259866 | Clytia hemisphaerica | exon |
| TCONS_00008314-exon-sc0000084-1510915933:258358..258623 | TCONS_00008314-exon-sc0000084-1510915933:258358..258623 | Clytia hemisphaerica | exon |
| TCONS_00008314-exon-sc0000084-1491911889:262649..262953 | TCONS_00008314-exon-sc0000084-1491911889:262649..262953 | Clytia hemisphaerica | exon |
| TCONS_00008314-exon-sc0000084-1491911889:259795..259866 | TCONS_00008314-exon-sc0000084-1491911889:259795..259866 | Clytia hemisphaerica | exon |
| TCONS_00008314-exon-sc0000084-1491911889:258358..258623 | TCONS_00008314-exon-sc0000084-1491911889:258358..258623 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:258358..262953 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR009346 | GRIM-19 |
Blast
BLAST of TCONS_00008314 vs. Swiss-Prot (Human)
Match: NDUAD (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN=NDUFA13 PE=1 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 1.872e-29 Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 1
Query: 151 KQDLPPPGGYAAYVYKSQVKPRGPSGVAIMAGGLAVMGIGFYFVSKGNQNRRELVREQKMARIHLLPLLQAEQDRLNLKRLKENLETEKAIMKDVEGWDLSQSVYNVYNTDRWVPP 498
KQD+PPPGGY YK + RG SG +++A G+ + G + + K N+ RR L E ARI LLPLLQAE DR L+ L+ENLE E IMKDV W + +S V++T RWVPP
Sbjct: 7 KQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGES---VFHTTRWVPP 119
The following BLAST results are available for this feature:
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