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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008313 ID=TCONS_00008313|Name=TCONS_00008313|organism=Clytia hemisphaerica|type=transcript|length=1615bpRun BLAST on NCBI protein sequence of TCONS_00008313-protein >TCONS_00008313-protein ID=TCONS_00008313-protein|Name=TCONS_00008313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=507bp MFSHLQDINSTGYLWMFFFGGVLDVLLSSGITFGWAGIVYIFKMELFFIDRun BLAST on NCBI transcript from alignment at sc0000084:230350..241198- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008313 ID=TCONS_00008313|Name=TCONS_00008313|organism=Clytia hemisphaerica|type=transcript|length=10849bp|location=Sequence derived from alignment at sc0000084:230350..241198- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000084:230350..241198- >TCONS_00008313 ID=TCONS_00008313|Name=TCONS_00008313|organism=Clytia hemisphaerica|type=CDS|length=18288bp|location=Sequence derived from alignment at sc0000084:230350..241198- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008313 vs. Swiss-Prot (Human)
Match: S43A3 (Solute carrier family 43 member 3 OS=Homo sapiens GN=SLC43A3 PE=1 SV=2) HSP 1 Score: 198.364 bits (503), Expect = 3.419e-56 Identity = 144/495 (29.09%), Postives = 244/495 (49.29%), Query Frame = 2
Query: 134 GVLDVLLSSGITFGWAGIVYIFKMELFFIDLCPLSIQQSALTSLLDNTSNKTILQERSRFKHGFPGCIEQDSRLQLIFTVAMFVQSVTLFFSGILVDRYGPKMIRGIGFAIYMFGCFGLAFMNRDNANLLFLVFTLIMIGSQFLVMAVYQSTNIIFRRFRGAATSIMFGAFDSSAVVLLLFKIIYQSGFSLKLITFCYCIIVFIISNLMTIVLIPPQHVL--------------RKWTQEEMESLSEKSRISETSLEHSKNEKTPLVPAEKMKKKDSLRSHICSPFYILHVFYLSVFQLKLWYYVGTLPDDLTQLSNYDNEKVSDYIDIFGYCQFGGLLVSPVLAFIXXXXXXXXXXXXTQGPVSQFERTR-NCVPVFAVTTILCIIFCIANSLPVLKIQVLSFLVYMIVRAFLYGSHGVFIGAAFPAKDYGTLFGIGMLVAAATGALQYPLFEIRSRLMGNQPLGVQLIIFGLVICACVHPIHVYWRTRDTEKN 1573
G+L+ L +G+ FGW +V++FK E +F DLC N T G C QD R LIFT+ F+ + F +G + DR+ + R I Y +AF + +A LLFL ++ IG ++ Q N+ F + R ++ GAFDSS+ V L+ K++Y+ G SL+ +F + + T +L+P H+ T+EE E+ ++R ++ S E+TP A + ++ S S+ S + H+ +LSV QL + ++GTL LT ++ D +VS Y + F + QFG +L +P ++D+ K + + S + VP A+T++LC+ F + S+P+L +Q L+F++ +I R+FLYGS+ F+ AFP++ +G LFG+ M ++A LQ+P+F + + N P V ++ ++ HP VY R +++
Sbjct: 16 GLLECLGFAGVLFGWPSLVFVFKNEDYFKDLCGPDA---------GPIGNAT----------GQADCKAQDERFSLIFTLGSFMNNFMTFPTGYIFDRFKTTVARLIAIFFYTTATLIIAFTSAGSAVLLFLAMPMLTIGGILFLITNLQIGNL-FGQHRSTIITLYNGAFDSSSAVFLIIKLLYEKGISLR-ASFIFISVCSTWHVARTFLLMPRGHIPYPLPPNYSYGLCPGNGTTKEEKETAEHENRELQSKEFLSAKEETP--GAGQKQELRSFWSYAFSRRFAWHLVWLSVIQLWHYLFIGTLNSLLTNMAGGDMARVSTYTNAFAFTQFG-VLCAPWNGLLMDRLKQKYQKEARKTGSSTLAVALCSTVPSLALTSLLCLGFALCASVPILPLQYLTFILQVISRSFLYGSNAAFLTLAFPSEHFGKLFGLVMALSAVVSLLQFPIFTLIKGSLQNDPFYVNVMFMLAILLTFFHPFLVYRECRTWKES 486 The following BLAST results are available for this feature:
BLAST of TCONS_00008313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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