TCONS_00008310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008310
Unique NameTCONS_00008310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008310 ID=TCONS_00008310|Name=TCONS_00008310|organism=Clytia hemisphaerica|type=transcript|length=2480bp
TTTCACTGTTGataacttttcttttcaaatcttttgtttcgacttatcaa
tttttcatttttttatttattccaggcaaagaaaaaaatatataatatta
cAATGACGTCAGCTTACCCCACCCAAGGAAAAGGTGCGGGAGTACCTCCA
CCTGCCACgggtcaacaacaacaacctccTCCACCACCAGGCTACTATCA
GACACAGCCAGGGATGCAACCCCCTCCCGTAGGGATGCAACCTTCTCCCA
TGGGTATGCAACAACCACCCATGGGTATGCAGCAGGCTCCCATAGCTCAG
CAGCCAGGTGGAGTGCCCTACGTTATGAACAATAGAGCTATGATAGCAAT
GCTCCCAATGAAACTCGGTCGGCAGCCGGTACAACTGAAATGTGTAACTT
GTATGCAATATATCACAACTGACGTCAGAGAAACTATTGGAACCTGTCAA
TGGCTCATTGCTATCCTTCTATGTAGCTTTTTACTGTTTATTTTTGCTTG
GATACCTTTTGTTATTGACGATTTGAAAGATGCTGTCCATAGTTGTCCGA
ATTGCAAATCATACTGTGGATTCCATCGTACCTACGCACCGGGTTATTGA
TCATACACAAAATTTACTTCGTACGGTTTCTTGTATTATGTATATACAAT
CTTTGCATGATGAGCTATTTGAAAAGGTATCTGGGTTCGAGTTGATTCAG
ATCGAATGTCTTTGCAAATCATCATTTATGGTTATATGATGACCAGGGCT
TACTGGGACCCAGCTCTCTTCACAATTACTTGGATAAGTGTTTCTATTGC
TAATTGTTCCATCCAATCATATTACcctattcattcattcattgatTTAC
AAGATTTGTGGTGATGTTGTGAGGTAGAATATTGCGAACTTGATACTGTA
TTCAAATCAAAGTGAGAATACAATTAGATATCGTTAACTGTATCGATTTT
TTATTCAAACCGTAAAACTGTAAActcaaatcacttcaaatggaAATACC
ATAAAAGTAGTGGAAACTTATCTTAAGGAAATTTCTCTGCTGTATAATTC
GTTAtctttttcgttatttttctttcGCGATGGTTACTGGTAAGCagtta
ttttttcactttttattgggctattccaaaaatagtctgcaccccctatg
ttgaggaggtgtgacgtccaggatGGTCTGGAATGTGAAAAATCCAAGGT
GGTCCGGTTTTCCGAttgtaaaaatccagggtggtcagtgaAACGAagtc
aaaaatccagggtggtccaaaaatagaaaagaagtagttcctgaaaatta
aaaaatatccagggggatatttttttataaaaaagacctAAACATAGGgc
gtataatttttttctggaatagcccatctTTGTTTGTGCTCTTCTTTGCT
TTTGTTTATTAATTATCACAAATATTACTTTTAACTTATTAATGCCTTTC
TCTTAAGGCCATCCATACTAAACAAACCAACTTACTCACACTCTAATTTT
AAACGGTTTCTAGAAGCTATCAACCAAGTTCAACCAAGTTAACAAGCAAG
GCTTGATAGCAGATAACAGTTGCTCAAATAACGCTAATTTCTCCAGCTTT
ATACCCTGTGTCAGTTCCCGGTCTAACTTTTTTACACAGGAAGATAATCG
AacatttctatcgaaatccaaaTAAGCACGTAGAATTTTTATTGTTCCCT
GGTCCAAAAAATCAGTggggatagttttggagtgtaattttgctctttga
atttcaaatagagatgaaatcaaagtcaatttcccagtaaGCTTAAACTT
TTTGGAACTACCAAAtcttccagtggggatggtgtgccaccgggtctgtg
acacgggagTGTATTTTTTTCTAACAATGATAAAATATTTCGATTTGACA
TGTacctaattgttttttgtttcatatATTTAAAAATTCGTTTTGCAgct
tgtaaattttcaaaattgatatAATCATCCTATCAGGGCTTAGGCCCCAT
CGTTAGTAGAACCCTTTTCGAAGAAACAAAGGAGTGTAGtacattaaagg
ttttgtttttacataagtgttcccgtttcatatcagacacatatttcata
tcgggacagtgtcttcctattgttatgttatgctgatataagcaagaaat
atttttcttttcctctttccgaccaatcttgctccacatccgtgtcaaaa
gcttgtaaattaaaattgacgagtaagcaaacgatagcactcttatttaa
aatcaaaacctttAAGCAGTAAAACAGTGTTTATTATGTATAAATAAGAC
ACGTAATGACTTCTAATTATTACTACCTATTCCAATTTTTGTGATTTAAA
ATCCTTTATTTTCTATCTTGTTTTTCCATGGTAATTAGTCTTTAATGAAT
GATTATCATTTAATTATTCTTGTAAATTATGTGTATCTTGtacataaaga
aaataaaacctttattatattttgatcGGA
Run BLAST on NCBI

protein sequence of TCONS_00008310-protein

>TCONS_00008310-protein ID=TCONS_00008310-protein|Name=TCONS_00008310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MTSAYPTQGKGAGVPPPATGQQQQPPPPPGYYQTQPGMQPPPVGMQPSPM
GMQQPPMGMQQAPIAQQPGGVPYVMNNRAMIAMLPMKLGRQPVQLKCVTC
MQYITTDVRETIGTCQWLIAILLCSFLLFIFAWIPFVIDDLKDAVHSCPN
CKSYCGFHRTYAPGY
Run BLAST on NCBI

transcript from alignment at sc0000084:212165..215091-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008310 ID=TCONS_00008310|Name=TCONS_00008310|organism=Clytia hemisphaerica|type=transcript|length=2927bp|location=Sequence derived from alignment at sc0000084:212165..215091- (Clytia hemisphaerica)
TTTCACTGTTGATAACTTTTCTTTTCAAATCTTTTGTTTCGACTTATCAA
TTTTTCATTTTTTTATTTATTCCAGGCAAAGAAAAAAATATATAATATTA
CAATGACGTCAGCTTACCCCACCCAAGGAAAAGGTGCGGGAGTACCTCCA
CCTGCCACGGGTCAACAACAACAACCTCCTCCACCACCAGGCTACTATCA
GACACAGCCAGGGATGCAACCCCCTCCCGTAGGGATGCAACCTTCTCCCA
TGGGTATGCAACAACCACCCATGGGTATGCAGCAGGCTCCCATAGCTCAG
CAGCCAGGTGGAGTGCCCTACGTTATGAACAATAGAGCTATGATAGCAAT
GCTCCCAATGAAACTCGGTCGGCAGCCGGTACAACTGAAATGTGTAACTT
GTATGCAATATATCACAACTGACGTCAGAGAAACTATTGGAACCTGTCAA
TGGCTCATTGCTATCCTTCTATGTAGCTTTTTGTAAGTCTAACTTCTATG
TTGAAACTTTTTATATTTGCACAAATTTTGACAAATACCATAATCAAGGT
AAAGAACCTAACATAGTTGTGGCCCCTATAAGTAAGTTTTCAGGCTTGTT
TAAGTGCAATTTTAGGATTGACATGAAATATTAATTCAGAACTATTTATT
TTTTTCCTATAATAGCCTACTGTATTGCTTCGAATAAATTTCCCCTTTTA
AACACCCCTCTCTTAAAAACTCCCCTCCTAAAAATTAAATTTATCAATAA
ACGCCTCCTTCGAATGAATGCCTACCCTCTAGGAGGGCATTTATTTGTAA
CAAGTACCTAAAAGGAAGAATTATATTAAGGAAAATTTAAATATACGTCG
CTAAATGTATTTCTTCAGTGTTCTAAAAACAAAGATATATGATATGATGA
AAATCATTTTCGTTTTTCTCTCACCTCAGACTGTTTATTTTTGCTTGGAT
ACCTTTTGTTATTGACGATTTGAAAGATGCTGTCCATAGTTGTCCGAATT
GCAAATCATACTGTGGATTCCATCGTACCTACGCACCGGGTTATTGATCA
TACACAAAATTTACTTCGTACGGTTTCTTGTATTATGTATATACAATCTT
TGCATGATGAGCTATTTGAAAAGGTATCTGGGTTCGAGTTGATTCAGATC
GAATGTCTTTGCAAATCATCATTTATGGTTATATGATGACCAGGGCTTAC
TGGGACCCAGCTCTCTTCACAATTACTTGGATAAGTGTTTCTATTGCTAA
TTGTTCCATCCAATCATATTACCCTATTCATTCATTCATTGATTTACAAG
ATTTGTGGTGATGTTGTGAGGTAGAATATTGCGAACTTGATACTGTATTC
AAATCAAAGTGAGAATACAATTAGATATCGTTAACTGTATCGATTTTTTA
TTCAAACCGTAAAACTGTAAACTCAAATCACTTCAAATGGAAATACCATA
AAAGTAGTGGAAACTTATCTTAAGGAAATTTCTCTGCTGTATAATTCGTT
ATCTTTTTCGTTATTTTTCTTTCGCGATGGTTACTGGTAAGCAGTTATTT
TTTCACTTTTTATTGGGCTATTCCAAAAATAGTCTGCACCCCCTATGTTG
AGGAGGTGTGACGTCCAGGATGGTCTGGAATGTGAAAAATCCAAGGTGGT
CCGGTTTTCCGATTGTAAAAATCCAGGGTGGTCAGTGAAACGAAGTCAAA
AATCCAGGGTGGTCCAAAAATAGAAAAGAAGTAGTTCCTGAAAATTAAAA
AATATCCAGGGGGATATTTTTTTATAAAAAAGACCTAAACATAGGGCGTA
TAATTTTTTTCTGGAATAGCCCATCTTTGTTTGTGCTCTTCTTTGCTTTT
GTTTATTAATTATCACAAATATTACTTTTAACTTATTAATGCCTTTCTCT
TAAGGCCATCCATACTAAACAAACCAACTTACTCACACTCTAATTTTAAA
CGGTTTCTAGAAGCTATCAACCAAGTTCAACCAAGTTAACAAGCAAGGCT
TGATAGCAGATAACAGTTGCTCAAATAACGCTAATTTCTCCAGCTTTATA
CCCTGTGTCAGTTCCCGGTCTAACTTTTTTACACAGGAAGATAATCGAAC
ATTTCTATCGAAATCCAAATAAGCACGTAGAATTTTTATTGTTCCCTGGT
CCAAAAAATCAGTGGGGATAGTTTTGGAGTGTAATTTTGCTCTTTGAATT
TCAAATAGAGATGAAATCAAAGTCAATTTCCCAGTAAGCTTAAACTTTTT
GGAACTACCAAATCTTCCAGTGGGGATGGTGTGCCACCGGGTCTGTGACA
CGGGAGTGTATTTTTTTCTAACAATGATAAAATATTTCGATTTGACATGT
ACCTAATTGTTTTTTGTTTCATATATTTAAAAATTCGTTTTGCAGCTTGT
AAATTTTCAAAATTGATATAATCATCCTATCAGGGCTTAGGCCCCATCGT
TAGTAGAACCCTTTTCGAAGAAACAAAGGAGTGTAGTACATTAAAGGTTT
TGTTTTTACATAAGTGTTCCCGTTTCATATCAGACACATATTTCATATCG
GGACAGTGTCTTCCTATTGTTATGTTATGCTGATATAAGCAAGAAATATT
TTTCTTTTCCTCTTTCCGACCAATCTTGCTCCACATCCGTGTCAAAAGCT
TGTAAATTAAAATTGACGAGTAAGCAAACGATAGCACTCTTATTTAAAAT
CAAAACCTTTAAGCAGTAAAACAGTGTTTATTATGTATAAATAAGACACG
TAATGACTTCTAATTATTACTACCTATTCCAATTTTTGTGATTTAAAATC
CTTTATTTTCTATCTTGTTTTTCCATGGTAATTAGTCTTTAATGAATGAT
TATCATTTAATTATTCTTGTAAATTATGTGTATCTTGTACATAAAGAAAA
TAAAACCTTTATTATATTTTGATCGGA

Coding sequence (CDS) from alignment at sc0000084:212165..215091-

>TCONS_00008310 ID=TCONS_00008310|Name=TCONS_00008310|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000084:212165..215091- (Clytia hemisphaerica)
ACTGTTTATTTTTGCTTGGATACCTTTTGTTATTGACGATTTGAAAGATG
CTGTCCATAGTTGTCCGAATTGCAAATCATACTGTGGATTCCATCGTACC
TACGCACCGGGTTATTGAATGACGTCAGCTTACCCCACCCAAGGAAAAGG
TGCGGGAGTACCTCCACCTGCCACGGGTCAACAACAACAACCTCCTCCAC
CACCAGGCTACTATCAGACACAGCCAGGGATGCAACCCCCTCCCGTAGGG
ATGCAACCTTCTCCCATGGGTATGCAACAACCACCCATGGGTATGCAGCA
GGCTCCCATAGCTCAGCAGCCAGGTGGAGTGCCCTACGTTATGAACAATA
GAGCTATGATAGCAATGCTCCCAATGAAACTCGGTCGGCAGCCGGTACAA
CTGAAATGTGTAACTTGTATGCAATATATCACAACTGACGTCAGAGAAAC
TATTGGAACCTGTCAATGGCTCATTGCTATCCTTCTATGTAGCTTTTTAC
TGTTTATTTTTGCTTGGATACCTTTTGTTATTGACGATTTGAAAGATGCT
GTCCATAGTTGTCCGAATTGCAAATCATACTGTGGATTCCATCGTACCTA
CGCACCGGGTTATTGAATGACGTCAGCTTACCCCACCCAAGGAAAAGGTG
CGGGAGTACCTCCACCTGCCACGGGTCAACAACAACAACCTCCTCCACCA
CCAGGCTACTATCAGACACAGCCAGGGATGCAACCCCCTCCCGTAGGGAT
GCAACCTTCTCCCATGGGTATGCAACAACCACCCATGGGTATGCAGCAGG
CTCCCATAGCTCAGCAGCCAGGTGGAGTGCCCTACGTTATGAACAATAGA
GCTATGATAGCAATGCTCCCAATGAAACTCGGTCGGCAGCCGGTACAACT
GAAATGTGTAACTTGTATGCAATATATCACAACTGACGTCAGAGAAACTA
TTGGAACCTGTCAATGGCTCATTGCTATCCTTCTATGTAGCTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004667XLOC_004667Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008310-proteinTCONS_00008310-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008310-exon-sc0000084-1575043694:214610..215091TCONS_00008310-exon-sc0000084-1575043694:214610..215091Clytia hemisphaericaexon
TCONS_00008310-exon-sc0000084-1575043694:212165..214162TCONS_00008310-exon-sc0000084-1575043694:212165..214162Clytia hemisphaericaexon
TCONS_00008310-exon-sc0000084-1510915933:214610..215091TCONS_00008310-exon-sc0000084-1510915933:214610..215091Clytia hemisphaericaexon
TCONS_00008310-exon-sc0000084-1510915933:212165..214162TCONS_00008310-exon-sc0000084-1510915933:212165..214162Clytia hemisphaericaexon
TCONS_00008310-exon-sc0000084-1491911889:214610..215091TCONS_00008310-exon-sc0000084-1491911889:214610..215091Clytia hemisphaericaexon
TCONS_00008310-exon-sc0000084-1491911889:212165..214162TCONS_00008310-exon-sc0000084-1491911889:212165..214162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:212165..215091 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.84879	7.82212	23.6565	24.4066	28.2992	21.0596	21.2831	23.2382	17.7947	17.3281	18.8337	15.9588	17.603	15.2114	6.80402	8.76142	15.5245	20.8069	24.703	27.9478	38.2213	37.9917	15.1141	22.3164	36.9372	35.3644	13.3248	11.0953	8.96653	8.78693
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006629LITAF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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