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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008308 ID=TCONS_00008308|Name=TCONS_00008308|organism=Clytia hemisphaerica|type=transcript|length=2415bp
tttagatATACGGTGGCTAGataaaagaaaaaccaaaaaatatgAGTTTC
ATATTTGATAGCTTTGTTGTTTTTGGATCAGAGCTTTTATATTTCGCTTT
TGGATGGATATTTTTTATGCGTAAGCTATTCAAGAATTATGAAGTACGTC
ATGTAGTAGTGCAGCTAATTTTTGCTGTTACATTCTCCTTTTCCTGTATG
ATGTTCGAAttggtcatttttgaaattctgggCTATTTGGATCCAAGCTC
AAGGCTTTTCCACTGGAAGTTGTTAATCTACTCAATGTTATTAGTACTTA
TATTTTTGATCCCACTTTACATTGGTTATTTCCTGGTCTTGAATTTACAA
TGGGTACCGAGAGGATTAAAGAAAATTGTTGCATTAATTTACTGGTTTGC
TTTTTTGTATGTGTTTTGGAAATTACGTAATCCTTTTCCAATATTGAGTG
CCAAACATGGTATTTTCTCTATTGAGCAAGGTATTAGCCGTGTTGGTGTT
ATTGGAGTTACACTAATGGCGATTCTCTCAGGTTTTGGTGCCGTGAATTG
CCCATACACCTATATGTCTTATTTCATGAGGCATGTCACTGATGCAGATA
TTGCCACCGTTGAAAGGAGATTGATGCAAACAATGGAATTGATTATCGCT
AAAAAGAAGAGAATCGCATTAGCTAAACGCAAGAGGTTCGATAACCAAAA
GAAGAACAATTCAAAAAGTCTTTGGAGTGTATTCAGTGGCATGGCATCAA
GCAGTAACGAAGAAAACACCACCTTACTTGAAACTGAAGTCCAATCAATG
GAAGAATTAAGTCGCCAATTATATGTTGAAGTTATCGATCTACACAATAC
CAAGCAACGAATGATCCTCTCCAAGACTCTTCAAGGACGTTATTTTGATT
TCATGGGTCATATTTTCTCTTTATACTGCATGTGGAAGATCTTTATCTCA
TCTGTCAATATTATATTTGATCGTGTTGGTAAGAAAGACCCTATCACCAA
AGGATTTGAGATTCTATTCATGTTTTTGACCATTGATGTTGATGTTCAGT
TCTGGTCACAGCAGCTGTCCTTCTTCCTGGTTGGTATCTTGATAGTAACA
TCAATACGTGGCTTACTGATAACATTGACCAAGTTTTTTTACGCTTTATC
CAGCCATAAATCATCTAATATCATAGTGTTGGTGCTAGCTGAAATCATGG
GAATGTATTTCATATCGTCAGTATTACTCATGAGAATGAACATGCCACCA
AAGTATCGTGAAATAGTGACAGTTGTACTGGGAGATCTACAATTTCATTT
CTACCATCGTTGGTTTGATGTGATTTTCCTGGTCAGTGCTTTAGCGAGTA
TGGGGTTCTTATATGTGGCACACAAACAGGCACCAGAAAAACAGATTCAT
GGTTATTCTGCCAATGCTTCTTGATCGAGCATGGTTGTATTGTATGAATT
GGAGGAGATTGATTACAATTGATGAATTCTCTTTTAAACAATCTGGTCAT
TATACAGTTTAGTGGGATGGTAAATTTGAAACAGAGAGTTACGTTTTCTT
Ttaaataccgtaagttggtctaatatcgatatctctcgtctaattccgac
acccttctttagagacagaaGTAATATGGAGAGTTTGAATCATtcattga
aaaaggattattcctccctgaccactaagcaaagaaaaatagcctttacc
tttctatcaatttcagctgataaaaagggtgtcgaaatggTCGGAGTGGT
ATTGTTTTATAAATGCAGTAGACAAATTCAATAAGCATTAGTCCTTTATA
GTAACCAGGTCTTTAAAACTCAATAGACTTATGAAGATGATGGCATGCTG
AGGCAACGATAACCAATAACTTCAACAatcaatttaaaactttttctttg
acttagGAATACTAAAAATGTATATCGTTGCCTCAGCATATCATCTTCAT
AAAAGTCTATTGAGTGTAAAGACCTGGTTACTATAAAGGACTAATGCTTA
TTGAATTTGAATGGAATGCTCTTACAATGTAACTTGGTTTGGAACTAAAG
GTGTGTAGTTAAATTATGATTATCAAAGAAACCCTTGTACAAATACAGTC
TGAACACACAGAAGTGAACCACCTTTCCTGTACACGATATTTTATGATTA
TATTTACAATTATTCTGTTTGTAATAGTCTAAATTACTATACCTTTTCCT
TGtttgttctttcaaaaaaaaaaatcttttaggtATTTTATTTTCATNTA
CTATACCTTTTCCTTGtttgttctttcaaaaaaaaaatcttttagatatt
ttattttcattttgtactCTGTTGTTGTAGTAGTAGTTTTCTAATTTATT
ATTTGCTAAAATTTGTAGATTTGGTAACTTAAATatagaattttctttga
ataagTTTGATCCAT Run BLAST on NCBI protein sequence of TCONS_00008308-protein >TCONS_00008308-protein ID=TCONS_00008308-protein|Name=TCONS_00008308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
MSFIFDSFVVFGSELLYFAFGWIFFMRKLFKNYEVRHVVVQLIFAVTFSF
SCMMFELVIFEILGYLDPSSRLFHWKLLIYSMLLVLIFLIPLYIGYFLVL
NLQWVPRGLKKIVALIYWFAFLYVFWKLRNPFPILSAKHGIFSIEQGISR
VGVIGVTLMAILSGFGAVNCPYTYMSYFMRHVTDADIATVERRLMQTMEL
IIAKKKRIALAKRKRFDNQKKNNSKSLWSVFSGMASSSNEENTTLLETEV
QSMEELSRQLYVEVIDLHNTKQRMILSKTLQGRYFDFMGHIFSLYCMWKI
FISSVNIIFDRVGKKDPITKGFEILFMFLTIDVDVQFWSQQLSFFLVGIL
IVTSIRGLLITLTKFFYALSSHKSSNIIVLVLAEIMGMYFISSVLLMRMN
MPPKYREIVTVVLGDLQFHFYHRWFDVIFLVSALASMGFLYVAHKQAPEK
QIHGYSANAS Run BLAST on NCBI transcript from alignment at sc0000084:60716..63576- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008308 ID=TCONS_00008308|Name=TCONS_00008308|organism=Clytia hemisphaerica|type=transcript|length=2861bp|location=Sequence derived from alignment at sc0000084:60716..63576- (Clytia hemisphaerica)
TTTAGATATACGGTGGCTAGATAAAAGAAAAACCAAAAAATATGAGTTTC
ATATTTGATAGCTTTGTTGTTTTTGGATCAGAGCTTTTATATTTCGCTTT
TGGATGGATATTTTTTATGCGTAAGCTATTCAAGAATTATGAAGTACGTC
ATGTAGTAGTGCAGCTAATTTTTGCTGTTACATTCTCCTTTTCCTGTATG
ATGTTCGAATTGGTCATTTTTGAAATTCTGGGCTATTTGGATCCAAGCTC
AAGGCTTTTCCACTGGAAGTTGTTAATCTACTCAATGTTATTAGTACTTA
TATTTTTGATCCCACTTTACATTGGTTATTTCCTGGTCTTGAATTTACAA
TGGGTACCGAGAGGATTAAAGAAAATTGTTGCATTAATTTACTGGTTTGC
TTTTTTGTATGTGTTTTGGAAATTACGTAATCCTTTTCCAATATTGAGTG
CCAAACATGGTATTTTCTCTATTGAGCAAGGTATTAGCCGTGTTGGTGTT
ATTGGAGTTACACTAATGGCGATTCTCTCAGGTTTTGGTGCCGTGAATTG
CCCATACACCTATATGTCTTATTTCATGAGGCATGTCACTGATGCAGATA
TTGCCACCGTTGAAAGGAGATTGATGCAAACAATGGAATTGATTATCGCT
AAAAAGAAGAGAATCGCATTAGCTAAACGCAAGAGGTTCGATAACCAAAA
GAAGAACAATTCAAAAAGTGAGGATCTTTTTATTGAATAAGAATGACCAA
TTGGTGCCTTGGTTCTCCTTTAAATCTATCCATTTGGTTGAAATAATTCA
TTACATCGTGATAATTGTGTACTTTTTTTATGCACAAAAATTTTCAAACT
GAACTAATACCTTTTAAATTTGAGTGTATTTCATGTCAAATAATAATGTG
CTCAACTCTAAAGTTGATACATTTACTTTATGCTTGTATACCAAGTTTAT
CGTTCTACATCTGCAATAGCATACTGCAGTAATTCTGAGAATAGACATCA
AAATTACAGTTTGTCTGAGTTTTAATCACATCGTCCTTGGCATTAATTGT
TTTTGTAAGTCAATTACAAAGTAATAACTATGACGTTTGCATAGCCGTGT
GCTATTGACCTTTTAGTTACTATTTGCTTGTTACAAATAATTGCCACTCT
GCTTTCTTTCAAGGTCTTTGGAGTGTATTCAGTGGCATGGCATCAAGCAG
TAACGAAGAAAACACCACCTTACTTGAAACTGAAGTCCAATCAATGGAAG
AATTAAGTCGCCAATTATATGTTGAAGTTATCGATCTACACAATACCAAG
CAACGAATGATCCTCTCCAAGACTCTTCAAGGACGTTATTTTGATTTCAT
GGGTCATATTTTCTCTTTATACTGCATGTGGAAGATCTTTATCTCATCTG
TCAATATTATATTTGATCGTGTTGGTAAGAAAGACCCTATCACCAAAGGA
TTTGAGATTCTATTCATGTTTTTGACCATTGATGTTGATGTTCAGTTCTG
GTCACAGCAGCTGTCCTTCTTCCTGGTTGGTATCTTGATAGTAACATCAA
TACGTGGCTTACTGATAACATTGACCAAGTTTTTTTACGCTTTATCCAGC
CATAAATCATCTAATATCATAGTGTTGGTGCTAGCTGAAATCATGGGAAT
GTATTTCATATCGTCAGTATTACTCATGAGAATGAACATGCCACCAAAGT
ATCGTGAAATAGTGACAGTTGTACTGGGAGATCTACAATTTCATTTCTAC
CATCGTTGGTTTGATGTGATTTTCCTGGTCAGTGCTTTAGCGAGTATGGG
GTTCTTATATGTGGCACACAAACAGGCACCAGAAAAACAGATTCATGGTT
ATTCTGCCAATGCTTCTTGATCGAGCATGGTTGTATTGTATGAATTGGAG
GAGATTGATTACAATTGATGAATTCTCTTTTAAACAATCTGGTCATTATA
CAGTTTAGTGGGATGGTAAATTTGAAACAGAGAGTTACGTTTTCTTTTAA
ATACCGTAAGTTGGTCTAATATCGATATCTCTCGTCTAATTCCGACACCC
TTCTTTAGAGACAGAAGTAATATGGAGAGTTTGAATCATTCATTGAAAAA
GGATTATTCCTCCCTGACCACTAAGCAAAGAAAAATAGCCTTTACCTTTC
TATCAATTTCAGCTGATAAAAAGGGTGTCGAAATGGTCGGAGTGGTATTG
TTTTATAAATGCAGTAGACAAATTCAATAAGCATTAGTCCTTTATAGTAA
CCAGGTCTTTAAAACTCAATAGACTTATGAAGATGATGGCATGCTGAGGC
AACGATAACCAATAACTTCAACAATCAATTTAAAACTTTTTCTTTGACTT
AGGAATACTAAAAATGTATATCGTTGCCTCAGCATATCATCTTCATAAAA
GTCTATTGAGTGTAAAGACCTGGTTACTATAAAGGACTAATGCTTATTGA
ATTTGAATGGAATGCTCTTACAATGTAACTTGGTTTGGAACTAAAGGTGT
GTAGTTAAATTATGATTATCAAAGAAACCCTTGTACAAATACAGTCTGAA
CACACAGAAGTGAACCACCTTTCCTGTACACGATATTTTATGATTATATT
TACAATTATTCTGTTTGTAATAGTCTAAATTACTATACCTTTTCCTTGTT
TGTTCTTTCAAAAAAAAAAATCTTTTAGGTATTTTATTTTCATNTACTAT
ACCTTTTCCTTGTTTGTTCTTTCAAAAAAAAAATCTTTTAGATATTTTAT
TTTCATTTTGTACTCTGTTGTTGTAGTAGTAGTTTTCTAATTTATTATTT
GCTAAAATTTGTAGATTTGGTAACTTAAATATAGAATTTTCTTTGAATAA
GTTTGATCCAT Coding sequence (CDS) from alignment at sc0000084:60716..63576- >TCONS_00008308 ID=TCONS_00008308|Name=TCONS_00008308|organism=Clytia hemisphaerica|type=CDS|length=2766bp|location=Sequence derived from alignment at sc0000084:60716..63576- (Clytia hemisphaerica)
GTCTTTGGAGTGTATTCAGTGGCATGGCATCAAGCAGTAACGAAGAAAAC
ACCACCTTACTTGAAACTGAAGTCCAATCAATGGAAGAATTAAGTCGCCA
ATTATATGTTGAAGTTATCGATCTACACAATACCAAGCAACGAATGATCC
TCTCCAAGACTCTTCAAGGACGTTATTTTGATTTCATGGGTCATATTTTC
TCTTTATACTGCATGTGGAAGATCTTTATCTCATCTGTCAATATTATATT
TGATCGTGTTGGTAAGAAAGACCCTATCACCAAAGGATTTGAGATTCTAT
TCATGTTTTTGACCATTGATGTTGATGTTCAGTTCTGGTCACAGCAGCTG
TCCTTCTTCCTGGTTGGTATCTTGATAGTAACATCAATACGTGGCTTACT
GATAACATTGACCAAGTTTTTTTACGCTTTATCCAGCCATAAATCATCTA
ATATCATAGTGTTGGTGCTAGCTGAAATCATGGGAATGTATTTCATATCG
TCAGTATTACTCATGAGAATGAACATGCCACCAAAGTATCGTGAAATAGT
GACAGTTGTACTGGGAGATCTACAATTTCATTTCTACCATCGTTGGTTTG
ATGTGATTTTCCTGGTCAGTGCTTTAGCGAGTATGGGGTTCTTATATGTG
GCACACAAACAGGCACCAGAAAAACAGATTCATGGTTATTCTGCCAATGC
TTCTTGAATGAGTTTCATATTTGATAGCTTTGTTGTTTTTGGATCAGAGC
TTTTATATTTCGCTTTTGGATGGATATTTTTTATGCGTAAGCTATTCAAG
AATTATGAAGTACGTCATGTAGTAGTGCAGCTAATTTTTGCTGTTACATT
CTCCTTTTCCTGTATGATGTTCGAATTGGTCATTTTTGAAATTCTGGGCT
ATTTGGATCCAAGCTCAAGGCTTTTCCACTGGAAGTTGTTAATCTACTCA
ATGTTATTAGTACTTATATTTTTGATCCCACTTTACATTGGTTATTTCCT
GGTCTTGAATTTACAATGGGTACCGAGAGGATTAAAGAAAATTGTTGCAT
TAATTTACTGGTTTGCTTTTTTGTATGTGTTTTGGAAATTACGTAATCCT
TTTCCAATATTGAGTGCCAAACATGGTATTTTCTCTATTGAGCAAGGTAT
TAGCCGTGTTGGTGTTATTGGAGTTACACTAATGGCGATTCTCTCAGGTT
TTGGTGCCGTGAATTGCCCATACACCTATATGTCTTATTTCATGAGGCAT
GTCACTGATGCAGATATTGCCACCGTTGAAAGGAGATTGATGCAAACAAT
GGAATTGATTATCGCTAAAAAGAAGAGAATCGCATTAGCTAAACGCAAGA
GGTTCGATAACCAAAAGAAGAACAATTCAAAAAGTCTTTGGAGTGTATTC
AGTGGCATGGCATCAAGCAGTAACGAAGAAAACACCACCTTACTTGAAAC
TGAAGTCCAATCAATGGAAGAATTAAGTCGCCAATTATATGTTGAAGTTA
TCGATCTACACAATACCAAGCAACGAATGATCCTCTCCAAGACTCTTCAA
GGACGTTATTTTGATTTCATGGGTCATATTTTCTCTTTATACTGCATGTG
GAAGATCTTTATCTCATCTGTCAATATTATATTTGATCGTGTTGGTAAGA
AAGACCCTATCACCAAAGGATTTGAGATTCTATTCATGTTTTTGACCATT
GATGTTGATGTTCAGTTCTGGTCACAGCAGCTGTCCTTCTTCCTGGTTGG
TATCTTGATAGTAACATCAATACGTGGCTTACTGATAACATTGACCAAGT
TTTTTTACGCTTTATCCAGCCATAAATCATCTAATATCATAGTGTTGGTG
CTAGCTGAAATCATGGGAATGTATTTCATATCGTCAGTATTACTCATGAG
AATGAACATGCCACCAAAGTATCGTGAAATAGTGACAGTTGTACTGGGAG
ATCTACAATTTCATTTCTACCATCGTTGGTTTGATGTGATTTTCCTGGTC
AGTGCTTTAGCGAGTATGGGGTTCTTATATGTGGCACACAAACAGGCACC
AGAAAAACAGATTCATGGTTATTCTGCCAATGCTTCTTGAATGAGTTTCA
TATTTGATAGCTTTGTTGTTTTTGGATCAGAGCTTTTATATTTCGCTTTT
GGATGGATATTTTTTATGCGTAAGCTATTCAAGAATTATGAAGTACGTCA
TGTAGTAGTGCAGCTAATTTTTGCTGTTACATTCTCCTTTTCCTGTATGA
TGTTCGAATTGGTCATTTTTGAAATTCTGGGCTATTTGGATCCAAGCTCA
AGGCTTTTCCACTGGAAGTTGTTAATCTACTCAATGTTATTAGTACTTAT
ATTTTTGATCCCACTTTACATTGGTTATTTCCTGGTCTTGAATTTACAAT
GGGTACCGAGAGGATTAAAGAAAATTGTTGCATTAATTTACTGGTTTGCT
TTTTTGTATGTGTTTTGGAAATTACGTAATCCTTTTCCAATATTGAGTGC
CAAACATGGTATTTTCTCTATTGAGCAAGGTATTAGCCGTGTTGGTGTTA
TTGGAGTTACACTAATGGCGATTCTCTCAGGTTTTGGTGCCGTGAATTGC
CCATACACCTATATGTCTTATTTCATGAGGCATGTCACTGATGCAGATAT
TGCCACCGTTGAAAGGAGATTGATGCAAACAATGGAATTGATTATCGCTA
AAAAGAAGAGAATCGCATTAGCTAAACGCAAGAGGTTCGATAACCAAAAG
AAGAACAATTCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008308-exon-sc0000084-1575043694:62860..63576 | TCONS_00008308-exon-sc0000084-1575043694:62860..63576 | Clytia hemisphaerica | exon |
| TCONS_00008308-exon-sc0000084-1575043694:60716..62413 | TCONS_00008308-exon-sc0000084-1575043694:60716..62413 | Clytia hemisphaerica | exon |
| TCONS_00008308-exon-sc0000084-1510915933:62860..63576 | TCONS_00008308-exon-sc0000084-1510915933:62860..63576 | Clytia hemisphaerica | exon |
| TCONS_00008308-exon-sc0000084-1510915933:60716..62413 | TCONS_00008308-exon-sc0000084-1510915933:60716..62413 | Clytia hemisphaerica | exon |
| TCONS_00008308-exon-sc0000084-1491911889:62860..63576 | TCONS_00008308-exon-sc0000084-1491911889:62860..63576 | Clytia hemisphaerica | exon |
| TCONS_00008308-exon-sc0000084-1491911889:60716..62413 | TCONS_00008308-exon-sc0000084-1491911889:60716..62413 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:60716..63576 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025969 | ABA_GPCR_dom |
| IPR022535 | Golgi_pH-regulator_cons_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
Blast
BLAST of TCONS_00008308 vs. Swiss-Prot (Human)
Match: GPHRB (Golgi pH regulator B OS=Homo sapiens GN=GPR89B PE=1 SV=1) HSP 1 Score: 537.724 bits (1384), Expect = 0.000e+0 Identity = 285/454 (62.78%), Postives = 378/454 (83.26%), Query Frame = 3
Query: 42 MSFIFDSFVVFGSELLYFAFGWIFFMRKLFKNYEVRHVVVQLIFAVTFSFSCMMFELVIFEILGYLDPSSRLFHWKLLIYSMLLVLIFLIPLYIGYFLVLNLQWVPRGLKKIVALIYWFAFLYVFWKLRNPFPILSAKHGIFSIEQGISRVGVIGVTLMAILSGFGAVNCPYTYMSYFMRHVTDADIATVERRLMQTMEXXXXXXXXXXXXXXXXFDNQKKNNSKS-LWSVFSGMAXXXX-XXXXXXXXXXVQSMEELSRQLYVEVIDLHNTKQRMILSKTLQGRYFDFMGHIFSLYCMWKIFISSVNIIFDRVGKKDPITKGFEILFMFLTIDVDVQFWSQQLSFFLVGILIVTSIRGLLITLTKFFYALSSHKSSNIIVLVLAEIMGMYFISSVLLMRMNMPPKYREIVTVVLGDLQFHFYHRWFDVIFLVSALASMGFLYVAHKQAPEKQI 1397
MSF+ DS ++ S++L+F FGW+FFMR+LFK+YE+R VVQ+IF+VTF+FSC MFEL+IFEILG L+ SSR FHWK+ + +LL+L+F++P YIGYF+V N++ + + + + + + W F+Y FWKL +PFPILS KHGI SIEQ ISRVGVIGVTLMA+LSGFGAVNCPYTYMSYF+R+VTD DI +ERRL+QTM++II+KKKR+A+A+R F + +N S W + + +S++ EN TL++ EV ++EELSRQL++E DL+ TK+R+ SKT +G+YF+F+G+ FS+YC+WKIF++++NI+FDRVGK DP+T+G EI +L I DV+FWSQ +SF LVGI+IVTSIRGLLITLTKFFYA+SS KSSN+IVL+LA+IMGMYF+SSVLL+RM+MP +YR I+T VLG+LQF+FYHRWFDVIFLVSAL+S+ FLY+AHKQAPEKQ+
Sbjct: 1 MSFLIDSSIMITSQILFFGFGWLFFMRQLFKDYEIRQYVVQVIFSVTFAFSCTMFELIIFEILGVLNSSSRYFHWKMNLCVILLILVFMVPFYIGYFIVSNIRLLHKQ-RLLFSCLLWLTFMYFFWKLGDPFPILSPKHGILSIEQLISRVGVIGVTLMALLSGFGAVNCPYTYMSYFLRNVTDTDILALERRLLQTMDMIISKKKRMAMARRTMFQKGEVHNKPSGFWGMIKSVTTSASGSENLTLIQQEVDALEELSRQLFLETADLYATKERIEYSKTFKGKYFNFLGYFFSIYCVWKIFMATINIVFDRVGKTDPVTRGIEITVNYLGIQFDVKFWSQHISFILVGIIIVTSIRGLLITLTKFFYAISSSKSSNVIVLLLAQIMGMYFVSSVLLIRMSMPLEYRTIITEVLGELQFNFYHRWFDVIFLVSALSSILFLYLAHKQAPEKQM 453
The following BLAST results are available for this feature:
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