TCONS_00008291 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008291
Unique NameTCONS_00008291
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008291 ID=TCONS_00008291|Name=TCONS_00008291|organism=Clytia hemisphaerica|type=transcript|length=1237bp
ATAAAAGCTTACAGCTTGTGAGGGAGACGATGATCTAGAGAACGAATAAA
ACACACAATTGTCAAGATGACTTCAGACGACCTGCAACAAAAGCTTCTGC
AATACATCAACGAGGCGCGCTCAAAACCTGCACTCATGGCCGCCAAATTC
AGTTTACTCTCAGAAATCGACCCAACTCTTTATAACAAACTATTCAAATA
TGCGTCCGAATTATTAGACGTTTTGTCCGAAATTGACAATCCTGGTATCA
AATTTTCGGACATTTACACTATATTGTCAAGTCCGCATAATGATGTACAA
TCAACCGTCAAGTTATCGTTATACATGTATAAATTACGGACCGGAACCAT
AACAGATTCGGAATTAGAGGACCAGCTTGCAAACACGTTTAACGAAAACA
GTGTCAAGGAACTTATCTGTAAAGGAATTGCTTCTTTGTATTGTGAACAT
TACGGAAATGCATTCGCTTACCTGTCAGATGCTTGCGAACAAGATGTGCA
CACCGCGCGGTCAATCTTGTCCGCTTTTACTGTACCGTTTTTGAACTCTG
TTCGTAGTGACTTGGTCGATGCGCGTGAAAAACATTTGATTCCTTGTTCG
TGTGGAACCGGAGTACAGAATCACGGTTTTAGAGTCGGGCTAGTGCACGC
CGTTAAGACAGCAGCCAGCTGTGAGAATTTAGCAGAGACATCTTTCATTT
CGAACCTTGTCAATAACAACTCGAGTAAAACAAACCAACCTAAATTGTCT
TTCCAATTATGCCGTTTGCACCGGTTAATATCGgaattcgatgacgtcat
tcgaTTGTTACAGAATTCGAATTTTGACCGTACACCCATATTGAGGATGT
ATCTGGATGCTGGTCGAAGTGATTTCGCGGACATGTTCATGGAATTGAAT
GAACGTTTGATTGATCAGAAAGGTTTGAATAATTTCAATTCTGGTTCTAA
TGGTATTGAACAGATTGTTATGGACAGGAGTATCagtgtttgaaaaaaat
gttaagatttgttttgataataaaCTTTTACACGGAGAATGTAAACTTCT
TGATTAAATTGGAAGGCTACTGTCAACCTATTTCCCTGTTTTGCTTGCTG
CTTACTGGTtacagggttcagacagaccctggaaaacctggaaatatgat
aaattttcagaaaaatcagggaaactcagggaaacccagggagaaaaatt
ttttttcccagcgtctgctcagggaaactcagggaaa
Run BLAST on NCBI

transcript from alignment at sc0000084:592480..594445+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008291 ID=TCONS_00008291|Name=TCONS_00008291|organism=Clytia hemisphaerica|type=transcript|length=1966bp|location=Sequence derived from alignment at sc0000084:592480..594445+ (Clytia hemisphaerica)
ATAAAAGCTTACAGCTTGTGAGGGAGACGATGATCTAGGTACAATTTTCA
TACATTGTCTAAAAACCCTTGAATCATAGTCAAGACCTGTGTTTGGCACT
TTTAGGAGTTAATACCAATTTTGGATACATTGAACATAAGCTGGATTTAG
ATTTTGCTGGTTTTCTAGTTTAATATAAGCTATACGAATTTTTAAATCTG
TGTAAAGGTGTGATATGGTTCTTACTGGTTACATTGTTTTAGTAGTTTGC
AGTTGTTCACATGCTTGTCACAGCTTGTGAGATAAGAAAACGTGTTCGTA
GAGCTTATAAAATTTTGTTGAAGAGAGTTTGAAAAAGCTGGTAGTCGCTT
ACTGAAAAATTGCAAGCAAAGAAATATGGGGAAAGTCAAAGGAGCAAGTA
ATACCGATACATTACTTTGGTATTGCTTGTATATTAAATCATGAAATATG
GGGCAtaacaaattttttgatgaagAATGAATTCCAAATAAAGATTGACT
TCTAAGATACGATACGAGGATTGTAACATAGTACCAAGTCACTGTGGTAA
AAAGAGTACTGTGAGCTATTAGTTTTATGAGAATGTCAGACAATATCGTG
ACAAAGGAAGGtagagaaaattttcaacagttaTTTCCTTCGCTTTTATC
ACTAGATCAGTTATCGTCTATCATTCAGATTtgaataaaacaataaaaca
cgTTGCACACAGTACATAACCAAGGTCTGAAACTTTGAAATaactttatt
tcttttctatattACAGAGAACGAATAAAACACACAATTGTCAAGATGAC
TTCAGACGACCTGCAACAAAAGCTTCTGCAATACATCAACGAGGCGCGCT
CAAAACCTGCACTCATGGCCGCCAAATTCAGTTTACTCTCAGAAATCGAC
CCAACTCTTTATAACAAACTATTCAAATATGCGTCCGAATTATTAGACGT
TTTGTCCGAAATTGACAATCCTGGTATCAAATTTTCGGACATTTACACTA
TATTGTCAAGTCCGCATAATGATGTACAATCAACCGTCAAGTTATCGTTA
TACATGTATAAATTACGGACCGGAACCATAACAGATTCGGAATTAGAGGA
CCAGCTTGCAAACACGTTTAACGAAAACAGTGTCAAGGAACTTATCTGTA
AAGGAATTGCTTCTTTGTATTGTGAACATTACGGAAATGCATTCGCTTAC
CTGTCAGATGCTTGCGAACAAGATGTGCACACCGCGCGGTCAATCTTGTC
CGCTTTTACTGTACCGTTTTTGAACTCTGTTCGTAGTGACTTGGTCGATG
CGCGTGAAAAACATTTGATTCCTTGTTCGTGTGGAACCGGAGTACAGAAT
CACGGTTTTAGAGTCGGGCTAGTGCACGCCGTTAAGACAGCAGCCAGCTG
TGAGAATTTAGCAGAGACATCTTTCATTTCGAACCTTGTCAATAACAACT
CGAGTAAAACAAACCAACCTAAATTGTCTTTCCAATTATGCCGTTTGCAC
CGGTTAATATCGgaattcgatgacgtcattcgaTTGTTACAGAATTCGAA
TTTTGACCGTACACCCATATTGAGGATGTATCTGGATGCTGGTCGAAGTG
ATTTCGCGGACATGTTCATGGAATTGAATGAACGTTTGATTGATCAGAAA
GGTTTGAATAATTTCAATTCTGGTTCTAATGGTATTGAACAGATTGTTAT
GGACAGGAGTATCagtgtttgaaaaaaatgttaagatttgttttgataat
aaaCTTTTACACGGAGAATGTAAACTTCTTGATTAAATTGGAAGGCTACT
GTCAACCTATTTCCCTGTTTTGCTTGCTGCTTACTGGTtacagggttcag
acagaccctggaaaacctggaaatatgataaattttcagaaaaatcaggg
aaactcagggaaacccagggagaaaaattttttttcccagcgtctgctca
gggaaactcagggaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004659XLOC_004659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008291-exon-sc0000084-1491911889:592480..592517TCONS_00008291-exon-sc0000084-1491911889:592480..592517Clytia hemisphaericaexon
TCONS_00008291-exon-sc0000084-1510915933:592480..592517TCONS_00008291-exon-sc0000084-1510915933:592480..592517Clytia hemisphaericaexon
TCONS_00008291-exon-sc0000084-1575043694:592480..592517TCONS_00008291-exon-sc0000084-1575043694:592480..592517Clytia hemisphaericaexon
TCONS_00008291-exon-sc0000084-1491911889:593247..594445TCONS_00008291-exon-sc0000084-1491911889:593247..594445Clytia hemisphaericaexon
TCONS_00008291-exon-sc0000084-1510915933:593247..594445TCONS_00008291-exon-sc0000084-1510915933:593247..594445Clytia hemisphaericaexon
TCONS_00008291-exon-sc0000084-1575043694:593247..594445TCONS_00008291-exon-sc0000084-1575043694:593247..594445Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:592480..594445 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.14782	6.23753	1.75009	2.31354	5.45995	9.55833	11.9423	12.5815	13.9209	26.0509	19.3298	25.0353	35.1937	38.2845	51.4229	35.6762	15.1512	18.7688	20.8269	23.5929	7.15343	7.5286	14.4862	12.8509	6.06424	10.7017	5.18596	4.91861	12.5505	11.8031
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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