TCONS_00008289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008289
Unique NameTCONS_00008289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1180

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008289 ID=TCONS_00008289|Name=TCONS_00008289|organism=Clytia hemisphaerica|type=transcript|length=1180bp
CTTGTGCACACATAAATATTATTTGATTCGCGACTCTAGCCTcaccataa
aaaatgaaaatagcaATAGAAGGATGTGCGCATGGTGAACTAAACAAGAT
CTATGAAAGCATACAATACATTCAAGGAAGAGAGAAAATAAAGATAGATT
TATTGATATGTTGTGGAGACTTTCAATCAGTCCGGAATAAAGATGACATG
CTTAGCATGGCCGTCCCTCCCAAATATCGTGAAATGAAAGATTTTCCTGA
TTATTATAGTGATGAGATGAAACCAACAGAATTTGATGTTCAGAAATTCT
TAGAGCAGGAGCCAGATCTCTCTCTGTATCCTTTTGTTCAATCACCGCCT
GGATCAAATCCGCAAACAGAAGAATTTTGTGAACGTTTTGGAATCCCAAA
TCCATGTCAATTCACACCAAAATCTCAAGCCTCGTCATCAACTATTGCTG
CAACGCGTAAGCTCAATATTCCAAAACCTAAATTGAATCTGCCAAAACCA
ATGAAAGATGATTTCGAGGATATCCAGCAaccaaaagaaaacaaaagtgt
CACATCAAGGCAATCcgatgatgattttgatgaccTTATTAACCCAAACA
ACATTTCTTCAAATCCAGATGAAATTGATTTATCTGAAAAGGAATCAGAC
AGTAGCAGTGATTCTGATAGTGACTCTGAATCCTCAAAGATCTCCAAAGC
TGAATTGACCAACAAGAACTTATCATCCCTCCCATCGTTCATTGAAACAC
CTGTGAAGCAAACAGCTGAGAAGCGATCATCATCAGATTCTGCTGGAGAT
TCAAGCTTTACCGATTCTTCTGTTTCAGATACCACCAGTATTAAGAAACC
GAAACTTATAAGAAGAAATCAAAACTTATATACACCATCAAAGGATGAAT
AAGATAAACGTTTAGTAATTGCTGAATTACTGGTCTATTCAAATATTGTA
CTCTATAGGTCCCAGAAAACTTCCCCTCGAATTTCTTTTAATATTTCTAA
TATTACCACAGAAATTCTTTTTATAGTagtatttttattaaatttttctg
CTTCTAATTATTTGTTTTAACTCGAACACTTTTGTGTTCGTTACGTGTTT
TCGatttaacttttaaattttaacttGTATTTAGAGCTTTTTATATTCAT
Acgtaaattttcaaatatttataaaaagag
Run BLAST on NCBI

protein sequence of TCONS_00008289-protein

>TCONS_00008289-protein ID=TCONS_00008289-protein|Name=TCONS_00008289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
MKIAIEGCAHGELNKIYESIQYIQGREKIKIDLLICCGDFQSVRNKDDML
SMAVPPKYREMKDFPDYYSDEMKPTEFDVQKFLEQEPDLSLYPFVQSPPG
SNPQTEEFCERFGIPNPCQFTPKSQASSSTIAATRKLNIPKPKLNLPKPM
KDDFEDIQQPKENKSVTSRQSDDDFDDLINPNNISSNPDEIDLSEKESDS
SSDSDSDSESSKISKAELTNKNLSSLPSFIETPVKQTAEKRSSSDSAGDS
SFTDSSVSDTTSIKKPKLIRRNQNLYTPSKDE
Run BLAST on NCBI

transcript from alignment at sc0000084:583644..586339+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008289 ID=TCONS_00008289|Name=TCONS_00008289|organism=Clytia hemisphaerica|type=transcript|length=2696bp|location=Sequence derived from alignment at sc0000084:583644..586339+ (Clytia hemisphaerica)
CTTGTGCACACATAAATATTATTTGATTCGCGACTCTAGCCTcaccataa
aaaatgaaaatagcaATAGAAGGATGTGCGCATGGTGAACTAAACAAGAT
CTATGAAAGCATACAATACATTCAAGGAAGAGAGAAAATAAAGATAGATT
TATTGATATGTTGTGGAGACTTTCAATCAGTCCGGAATAAAGATGACATG
CTTAGCATGGCCGTCCCTCCCAAATATCGTGAAATGAAAGATTTTCCTGA
TTATTATAGTGGTAAGCGTAAAGCTCCTATTTTGACATTGTTTATTGGTG
GAAATCATGAAGCTGCTAATTATTTGTATGAGCTACCTTATGGAGGCTGG
GTTGcagaaaatatttattatctTGGGTATGCTGGTGTTATCAATTTTGC
TGGTTTGCGTATTGGAGGGTTGACTGGTATATTCAAGTTTCATGATTACG
GGAAATCTCATTATGAAAAACCACCTTTTGATGAGCAATCAAAACGTTCA
TTTTATCATGTTCGTAGTTGTGAtgtttcaaagttgaaattatTATCTGG
TACATCGTTTGATATATTTTTGAGTCATGATTGGCCAAAAAATATCTATA
ATTTTGGTAACAAGAATCAGTTGATGCGCTTTAAACCCTTCTTACGtgaa
gaaattgaaagtggTACTTTGGGTAGCAATGCNTcatgtttttaaatatt
gattCAGTGTCGTACTTGATTTTCACCACTCTTTACATTCAGGATAAAAA
ACTAGAGAAAAATATCCAAAAGTGACAAAGAGTCTATTATTCTTTCAGTT
TCAGTACAAAATTTTGCCTTCTTCTTGTGCACACATAAATATTATTTGAT
TCGCGACTCTAGCCTcaccataaaaaatgaaaatagcaATAGAAGGATGT
GCGCATGGTGAACTAAACAAGATCTATGAAAGCATACAATACATTCAAGG
AAGAGAGAAAATAAAGATAGATTTATTGATATGTTGTGGAGACTTTCAAT
CAGTCCGGAATAAAGATGACATGCTTAGCATGGCCGTCCCTCCCAAATAT
CGTGAAATGAAAGATTTTCCTGATTATTATAGTGGTAAGCGTAAAGCTCC
TATTTTGACATTGTTTATTGGTGGAAATCATGAAGCTGCTAATTATTTGT
ATGAGCTACCTTATGGAGGCTGGGTTGcagaaaatatttattatctTGGA
TATGCTGGTGTTATCAATTTTGCTGGTTTGCGTATTGGAGGGTTGACTGG
TATATTCAAGTTTCATGATTACGGGAAATCTCATTATGAAAAACCACCTT
TTGATGAGCAATCAAAACGGTCATTTTATCACGTTCGTAGTTGTGATGTT
TCAAAGTTGAAACTATTATCTGGTACATCGTTTGATATATTTTTGAGTCA
TGATTGGCCAAAAAATATCTATAATTTTGGTAACAAGAATCAGTTGATGC
GCTTTAAACCCTTCTTACGtgaagaaattgaaagtggTACTTTGGGTAGC
AATGCAGCAGAAGATTTGCTACACTCTTTGAAACCAAAATACTGGTTCAG
TGCTCACATGCATGCCAAATTCTCAGCAATAGTACCTCATAAAGATGGTA
CCTCTACCAAATTTTTAGCTCTCGATAAATGTTTACCAAATCGAAATTTC
TTGCAAATTCTTGATCTTCCAGAGGCGACAGAGGATCTCACATTTAAACA
TGATCCGTACTGGCTTTGTATTTTGAAGAATACACAACAGAGCTTTTTCA
AGCGCTCATTTTGTTCTTCTTTGCCAGATGAGATGAAACCAACAGAATTT
GATGTTCAGAAATTCTTAGAGCAGGAGCCAGATCTCTCTCTGTATCCTTT
TGTTCAATCACCGCCTGGATCAAATCCGCAAACAGAAGAATTTTGTGAAC
GTTTTGGAATCCCAAATCCATGTCAATTCACACCAAAATCTCAAGCCTCG
TCATCAACTATTGCTGCAACGCGTAAGCTCAATATTCCAAAACCTAAATT
GAATCTGCCAAAACCAATGAAAGATGATTTCGAGGATATCCAGCAaccaa
aagaaaacaaaagtgtCACATCAAGGCAATCcgatgatgattttgatgac
cTTATTAACCCAAACAACATTTCTTCAAATCCAGATGAAATTGATTTATC
TGAAAAGGAATCAGACAGTAGCAGTGATTCTGATAGTGACTCTGAATCCT
CAAAGATCTCCAAAGCTGAATTGACCAACAAGAACTTATCATCCCTCCCA
TCGTTCATTGAAACACCTGTGAAGCAAACAGCTGAGAAGCGATCATCATC
AGATTCTGCTGGAGATTCAAGCTTTACCGATTCTTCTGTTTCAGATACCA
CCAGTATTAAGAAACCGAAACTTATAAGAAGAAATCAAAACTTATATACA
CCATCAAAGGATGAATAAGATAAACGTTTAGTAATTGCTGAATTACTGGT
CTATTCAAATATTGTACTCTATAGGTCCCAGAAAACTTCCCCTCGAATTT
CTTTTAATATTTCTAATATTACCACAGAAATTCTTTTTATAGTagtattt
ttattaaatttttctgCTTCTAATTATTTGTTTTAACTCGAACACTTTTG
TGTTCGTTACGTGTTTTCGatttaacttttaaattttaacttGTATTTAG
AGCTTTTTATATTCATAcgtaaattttcaaatatttataaaaagag

Coding sequence (CDS) from alignment at sc0000084:583644..586339+

>TCONS_00008289 ID=TCONS_00008289|Name=TCONS_00008289|organism=Clytia hemisphaerica|type=CDS|length=1698bp|location=Sequence derived from alignment at sc0000084:583644..586339+ (Clytia hemisphaerica)
atgaaaatagcaATAGAAGGATGTGCGCATGGTGAACTAAACAAGATCTA
TGAAAGCATACAATACATTCAAGGAAGAGAGAAAATAAAGATAGATTTAT
TGATATGTTGTGGAGACTTTCAATCAGTCCGGAATAAAGATGACATGCTT
AGCATGGCCGTCCCTCCCAAATATCGTGAAATGAAAGATTTTCCTGATTA
TTATAGTGATGAGATGAAACCAACAGAATTTGATGTTCAGAAATTCTTAG
AGCAGGAGCCAGATCTCTCTCTGTATCCTTTTGTTCAATCACCGCCTGGA
TCAAATCCGCAAACAGAAGAATTTTGTGAACGTTTTGGAATCCCAAATCC
ATGTCAATTCACACCAAAATCTCAAGCCTCGTCATCAACTATTGCTGCAA
CGCGTAAGCTCAATATTCCAAAACCTAAATTGAATCTGCCAAAACCAATG
AAAGATGATTTCGAGGATATCCAGCAaccaaaagaaaacaaaagtgtCAC
ATCAAGGCAATCcgatgatgattttgatgaccTTATTAACCCAAACAACA
TTTCTTCAAATCCAGATGAAATTGATTTATCTGAAAAGGAATCAGACAGT
AGCAGTGATTCTGATAGTGACTCTGAATCCTCAAAGATCTCCAAAGCTGA
ATTGACCAACAAGAACTTATCATCCCTCCCATCGTTCATTGAAACACCTG
TGAAGCAAACAGCTGAGAAGCGATCATCATCAGATTCTGCTGGAGATTCA
AGCTTTACCGATTCTTCTGTTTCAGATACCACCAGTATTAAGAAACCGAA
ACTTATAAGAAGAAATCAAAACTTATATACACCATCAAAGGATGAATAAa
tgaaaatagcaATAGAAGGATGTGCGCATGGTGAACTAAACAAGATCTAT
GAAAGCATACAATACATTCAAGGAAGAGAGAAAATAAAGATAGATTTATT
GATATGTTGTGGAGACTTTCAATCAGTCCGGAATAAAGATGACATGCTTA
GCATGGCCGTCCCTCCCAAATATCGTGAAATGAAAGATTTTCCTGATTAT
TATAGTGATGAGATGAAACCAACAGAATTTGATGTTCAGAAATTCTTAGA
GCAGGAGCCAGATCTCTCTCTGTATCCTTTTGTTCAATCACCGCCTGGAT
CAAATCCGCAAACAGAAGAATTTTGTGAACGTTTTGGAATCCCAAATCCA
TGTCAATTCACACCAAAATCTCAAGCCTCGTCATCAACTATTGCTGCAAC
GCGTAAGCTCAATATTCCAAAACCTAAATTGAATCTGCCAAAACCAATGA
AAGATGATTTCGAGGATATCCAGCAaccaaaagaaaacaaaagtgtCACA
TCAAGGCAATCcgatgatgattttgatgaccTTATTAACCCAAACAACAT
TTCTTCAAATCCAGATGAAATTGATTTATCTGAAAAGGAATCAGACAGTA
GCAGTGATTCTGATAGTGACTCTGAATCCTCAAAGATCTCCAAAGCTGAA
TTGACCAACAAGAACTTATCATCCCTCCCATCGTTCATTGAAACACCTGT
GAAGCAAACAGCTGAGAAGCGATCATCATCAGATTCTGCTGGAGATTCAA
GCTTTACCGATTCTTCTGTTTCAGATACCACCAGTATTAAGAAACCGAAA
CTTATAAGAAGAAATCAAAACTTATATACACCATCAAAGGATGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004658XLOC_004658Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008289-proteinTCONS_00008289-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008289-exon-sc0000084-1491911889:583644..583904TCONS_00008289-exon-sc0000084-1491911889:583644..583904Clytia hemisphaericaexon
TCONS_00008289-exon-sc0000084-1510915933:583644..583904TCONS_00008289-exon-sc0000084-1510915933:583644..583904Clytia hemisphaericaexon
TCONS_00008289-exon-sc0000084-1575043694:583644..583904TCONS_00008289-exon-sc0000084-1575043694:583644..583904Clytia hemisphaericaexon
TCONS_00008289-exon-sc0000084-1491911889:585421..586339TCONS_00008289-exon-sc0000084-1491911889:585421..586339Clytia hemisphaericaexon
TCONS_00008289-exon-sc0000084-1510915933:585421..586339TCONS_00008289-exon-sc0000084-1510915933:585421..586339Clytia hemisphaericaexon
TCONS_00008289-exon-sc0000084-1575043694:585421..586339TCONS_00008289-exon-sc0000084-1575043694:585421..586339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:583644..586339 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.177	1.31477	1.23557	1.05409	25.9699	19.7401	9.26411	11.7661	6.52611	6.6982	3.94075	3.52152	2.83508	2.50679	3.3101	4.33367	3.16311	4.07707	1.15728	0.951673	2.44338	2.70123	3.33692	3.06001	3.05243	4.03849	1.42227	1.01019	2.61139	2.07022
Blast
[Close]
BLAST of TCONS_00008289 vs. Swiss-Prot (Human)
Match: DBR1 (Lariat debranching enzyme OS=Homo sapiens GN=DBR1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.774e-22
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 3 
Query:   54 MKIAIEGCAHGELNKIYESIQYIQGREKIKIDLLICCGDFQSVRNKDDMLSMAVPPKYREMKDFPDYYSDEMK 272
            M++A+ GC HGEL+KIYE++   + R    +DLL+CCGDFQ+VRN+ D+  MAVPPKYR M+ F  YYS E K
Sbjct:    1 MRVAVAGCCHGELDKIYETLALAERRGPGPVDLLLCCGDFQAVRNEADLRCMAVPPKYRHMQTFYRYYSGEKK 73
The following BLAST results are available for this feature:
BLAST of TCONS_00008289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DBR15.774e-2256.16Lariat debranching enzyme OS=Homo sapiens GN=DBR1 ... [more]
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