TCONS_00008287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008287
Unique NameTCONS_00008287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1919

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008287 ID=TCONS_00008287|Name=TCONS_00008287|organism=Clytia hemisphaerica|type=transcript|length=1919bp
AGAATCTTTATTATTGTCACGTGATAATTACTATGGCGACGTTTGTATTA
CCCCTAACAACAGAAAAGCGCAATCAACATCTTTTCTTTTCAGTTACATT
TTGGTAAGCTGGTCGTCTGGGTGTGTTTTCCCAATCCATAGGTAATTTAG
GGTAAATcttataattttataaaaaatgggaGACGAAGAACAAAAAGGAG
TAATAGCTGCTCGAGAAACTGGTCCAGGGCCAGGAAGGTATGCTTTGCCA
TCAACATGTGGCTATGAAAAGCATGATATTACTAAAAGAATGCAACCATC
ATATTCTTTTGGTCAACGTCTTGAAAGTTCCAtGTTCAAGAAAGACAGCA
GCCCTGGTCCAGGATACATGGTCCATCCATCAATCACACGATATGGCAAA
GATGGAACTCCTTGCTATTCAATATTAGGCAGAGCTAAAGAACAAAacTC
ATTCAAGACTCCATCCCCTGGAGCTTATTCTCCCGAAAAAGTTCACCCGC
AAGGTGAAAAACATGCACCTTCATACTCCATGGGTCAACGAACCAGATAC
CGAAAACGAGACACAACACCCTCACCTAATTCATATTCGCTTCCCCAATT
GCTTGGTAACAAAGTTCCCTGCAAACATGCTTCCGCAGCTTTTTCAATGA
CTGGCCGTTCCAAAACTGGCAGCTTTGCTGAAGATCTGGCTAAAACACCA
GGGCCAGGACATTATAGGATTTTGGATCCAAATGTTGTCAAAAGACGTGG
ACCAGCTTATTCAATCTTAGGACGAAGTTATATGCCTGGAGactCTACTC
AGAAACCAGGACCTGGTGCTCACTTTCCAGAGCGTGTTAGAAGCAATAAG
AAGGCTGCACCATCATTCTCTCTTGGTATTCGACATTCAGAATTCATCAC
ACCTTTGATTATCGATGTCCATGACTAAGTACTATTTCTCTTTAACTCTA
TTAtaataaaacctttttttcatttttagtaaaaatatattttttaaaaa
catatggATAATtattttacaatgatctttttttattttttataatagct
aaattatcaattttatgGGGTTCCATTTTAAAAGAAATGCGTGTGCTTCT
ATAGTATGATTTTATTTGTGTACAGTATTAATCGTGTTTGGTATAATCAT
TCATTTTAGTTACATAATACTTAAGTGCAAACTAATTGGTATGACCCATA
GAAATCTTATATCAAATACTAGATAGACCGTCCCTATTTGAATCGAGatc
atccgccatctttgataagtAGACCATAGTAGTTCGGTGTCCGCAATTTG
ATTGATTTATAAAGCTTCGTCGCTTCGCGCCACTCAGGTTTTTTGCTTGG
TTGAACAAATTGCTGGTACCGAACTGTAACCTACCtaacattattttgct
tcacctggtgttgcttgggaaatacctCTCTAGTGTTATATATTAGATAT
CTATGATGTGACCCCGAAGTTTTAATTCTATAAGAGCAAGCTCTGTGCGA
CAAATTCTTTGTCAAATTATCTGAATCTAACTTCTTCTTCTTTAGGCAAG
TCTCATCTAAGGCATAAACTTTTGACCTCTCCAATTTAGGCAATGAAGAA
TCTTTTGAAGGGCCTATAAATTCAGACTATCTGTTGCAGTTTTTTTCAGG
CTCTATCTTAATTTgtatatacatttttttaagaaataatgatTACTTTA
CGTCAAAGAAATATATGACTAATTTCAAATCttcttttgttcaattttat
ttttatggtTGATCAAGTAGTAACATTTCCTGAAacttgaaagtaatctc
tttaATTAATATTTTGCAGATTTTAACAGTAAATTGACTGCCGTGGAAAA
TTTTACCAAAGTTGGGTCCCAAAACAGTTTAAAGAACGATACTTCAGTTA
CCATGGGAACTAGAGGCCA
Run BLAST on NCBI

protein sequence of TCONS_00008287-protein

>TCONS_00008287-protein ID=TCONS_00008287-protein|Name=TCONS_00008287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MGDEEQKGVIAARETGPGPGRYALPSTCGYEKHDITKRMQPSYSFGQRLE
SSMFKKDSSPGPGYMVHPSITRYGKDGTPCYSILGRAKEQNSFKTPSPGA
YSPEKVHPQGEKHAPSYSMGQRTRYRKRDTTPSPNSYSLPQLLGNKVPCK
HASAAFSMTGRSKTGSFAEDLAKTPGPGHYRILDPNVVKRRGPAYSILGR
SYMPGDSTQKPGPGAHFPERVRSNKKAAPSFSLGIRHSEFITPLIIDVHD
Run BLAST on NCBI

transcript from alignment at sc0000084:505179..509752+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008287 ID=TCONS_00008287|Name=TCONS_00008287|organism=Clytia hemisphaerica|type=transcript|length=4574bp|location=Sequence derived from alignment at sc0000084:505179..509752+ (Clytia hemisphaerica)
AGAATCTTTATTATTGTCACGTGATAATTACTATGGCGACGTTTGTATTA
CCCCTAACAACAGAAAAGCGCAATCAACATCTTTTCTTTTCAGTTACATT
TTGGTAAGCTGGTCGTCTGGGTGTGTTTTCCCAATCCATAGGTAATTTAG
GGTAAATcttataattttataaaaaatgggaGACGAAGAACAAAAAGGAG
TAATAGCTGCTCGAGAAACTGGTAagtttttactttaattttgaatttcc
aaAAATCTTCCTTCCTCAAAACCCTACGCTTCGTTTCGATCGTACTGTCG
TATGGATGAGGGCAAAATAAATCAACAGTCAAACCAATTTTGATTAATAC
TTACTCAGCTCAGGTTTAGTTAAGGTTTGAGAAAtctcagaaataatttt
ttttacatccAATGCAGATTgagttttttaaaaacaaaagaacaccGCAA
AAATTCCTTGCTCTAACATCTGATGATAGAATTGCATAGAATCGCAGTGC
TTCAGAATTTCGCAACTTTAGTGTTGTCAAATTTCACACGGTATAGTTAA
ATTATGCAGCAATTcctttgcaaaatttgaaaagactTACCGTGAAgtgg
ggtaacttgcatcagtggtgGGAAActttgcatagccctcaaatgaatga
ccttgCTGGCTCGTCATTAATTAAAgtaaaagttaaatcaaaataaaaat
ggttgagtagagctgcgagcgggaCTGCGtagttgatttgttttgaaatt
ttgctgtttgatcagtcagtcatttgatgttatagatcaaaataaaaatg
gtcgagtagagctgcgagtggGACTGCGtagttgatttgttttgaaattt
tgctgtttGAGcagtcagtcatttgatggttaggcggcaatcacaaatat
cttcatttcgcgtccttgTTGGGTCTaataagtgagtcggtcggtcggtc
gtaaaaatttccagccagccagcagccaaaacaaccgcgtgtaatgggtg
gtttaaaattatgacctttgaacactgtgacctccgaccccaaattggcg
catgtaatgataaacaaagtcaaaatgctgcgaatgcgctagaaatcgct
cgcaaaaatttggcaataataaaatttttgaacgaaggaaggTCATTGAC
ATAAAAAGTCcaacaaatttaccgactcactgACTCAATTTTGGGGATGC
GAAACAAAggtgattgccgccttatgcaagtttccctccactactgatgc
aagttacccgacttcacgggtATCCTTTGAACCAAAAGATAcagtcaact
gctctaacttgggactatctgacaaaacaggGGACGGCAACTCACCCAAC
ATTTCAcgaaacctccaaagtcatttgatttgagttaatgaacggggtat
taaaataagatttaaaagtgaaaataaaggcaagatatcaacagtcccat
gtttcgaccaatcgtcccatgTCAGAGCAGTTGACGGCAGCGAGGGGGGT
TGCAGCAGCAGCGTGACAAACAGGTGGtctcaaaattattttgtttattt
tgtagaACAACCCAAATGTAAACTTTTCACTCTAGGGATTTTTCTCAATC
ATTCTTGACAGAAAGTctactttgataaaaaaaaaagtgagatCTTGCCT
AATTTTGcaagcatttttctaaaaaaattttggtgTTGTCAATCACAAGC
TTCAATTGGATGGAAGAAtgaatttgcaaaaatatgcaACTTGTGGAACT
GAATTGTAAATCGTGTGTTTACTTGTTATCGTGTtatttttttaaggaaa
tacaACTTggaataaataaattataaaaaaataacttgCAGACTTCTCGA
GTctgtaaatttgaaatttagctATTCTGCTTCTGgagtttttgaaatat
aaacAACAGAATGGTTTTCAGTGTTCTAAGCCTCCTCTTTCAAATATGAC
AGACACGCAtaacaaaattttcttcttctattTCAGGTCCAGGGCCAGGA
AGGTATGCTTTGCCATCAACATGTGGCTATGAAAAGCATGATATTACTAA
AAGAATGCAACCATCATATTCTTTTGGTCAACGTCTTGAAAGTTCCAGTA
AGTTGAGAATTTCAGTAGGGAtttagttttgatatttagttCTTTGTCAA
TTAAATACGCTCTTTAAAACTGTGTAATCTGAGCCAACTTTAAAGATCCA
CCTTTTCAGAATTTGTTTTCTCTTATATATTTTGAACATTTCGCCTGGTA
AAAAAGGATTTCAGTTAATAAATAAAACCTTATCTGAATTTGTATAgctg
taataaaaaaattatgctTGGTGTATAATATGCATTGgtctttctttttt
atctatttttagtGTTCAAGAAAGACAGCAGCCCTGGTCCAGGATACATG
GTCCATCCATCAATCACACGATATGGCAAAGATGGAACTCCTTGCTATTC
AATATTAGGCAGAGCTAAAGAACAAAGTACGAATACATCCAACTATTCAG
TTATCATCTTATTCATAAATCTATCAAAGTTTATAttaattaccattttc
aaaattaaagtcaaGATGAGATACATTAgattgacaaaaagaataaattt
gCAATCAAAGTAACTGGATTTGTTATTGTATATCTACAGTAAAacgcttt
tttctttttattagacTCATTCAAGACTCCATCCCCTGGAGCTTATTCTC
CCGAAAAAGTTCACCCGCAAGGTGAAAAACATGCACCTTCATACTCCATG
GGTCAACGAACCAGATACCGAAAACGTAAGTTTGTATTGGAAATGTAATC
AAAAGCAAAGCTTTCTgttgtttatattttatatatgcgTAAGTACTGTA
AGCAttctttttatatatcaaacatcttttctttacaatatgtttaaaat
ttgcgaaggttttttttaaatgtgatTCTCTCCTTTCTATTTCTAGGAGA
CACAACACCCTCACCTAATTCATATTCGCTTCCCCAATTGCTTGGTAACA
AAGTTCCCTGCAAACATGCTTCCGCAGCTTTTTCAATGACTGGCCGTTCC
AAAACTGGCAGCTTTGCTGAAGATCTGGCTAAAACACCAGGGCCAGGACA
TTATAGGATTTTGGATCCAAATGTTGTCAAAAGACGTGGACCAGCTTATT
CAATCTTAGGACGAAGTTATATGCCTGGAGGTATGGAcgcttaattataa
actttaaaTTCTTAAGGGTATGAAATGAAACAGAAAGATATAGTGACTTG
TGTTCAACAACGTCTATCTAAACATAGGGAAATGTTCTTGAAATCATATT
ATTAAAGCAGATCCCCGGCGGTCGTAACTTATTAAGCAACAAGCTAAATT
GTCAACAACGATTGTGCGAGTTTAAGTGTAGAAAGCACCGTTTGCAATTG
AACTTGTACCCTATCAACTtaactcttttattttatttttttttagactC
TACTCAGAAACCAGGACCTGGTGCTCACTTTCCAGAGCGTGTTAGAAGCA
ATAAGAAGGCTGCACCATCATTCTCTCTTGGTATTCGACATTCAGAATTC
ATCACACCTTTGATTATCGATGTCCATGACTAAGTACTATTTCTCTTTAA
CTCTATTAtaataaaacctttttttcatttttagtaaaaatatatttttt
aaaaacatatggATAATtattttacaatgatctttttttattttttataa
tagctaaattatcaattttatgGGGTTCCATTTTAAAAGAAATGCGTGTG
CTTCTATAGTATGATTTTATTTGTGTACAGTATTAATCGTGTTTGGTATA
ATCATTCATTTTAGTTACATAATACTTAAGTGCAAACTAATTGGTATGAC
CCATAGAAATCTTATATCAAATACTAGATAGACCGTCCCTATTTGAATCG
AGatcatccgccatctttgataagtAGACCATAGTAGTTCGGTGTCCGCA
ATTTGATTGATTTATAAAGCTTCGTCGCTTCGCGCCACTCAGGTTTTTTG
CTTGGTTGAACAAATTGCTGGTACCGAACTGTAACCTACCtaacattatt
ttgcttcacctggtgttgcttgggaaatacctCTCTAGTGTTATATATTA
GATATCTATGATGTGACCCCGAAGTTTTAATTCTATAAGAGCAAGCTCTG
TGCGACAAATTCTTTGTCAAATTATCTGAATCTAACTTCTTCTTCTTTAG
GCAAGTCTCATCTAAGGCATAAACTTTTGACCTCTCCAATTTAGGCAATG
AAGAATCTTTTGAAGGGCCTATAAATTCAGACTATCTGTTGCAGTTTTTT
TCAGGCTCTATCTTAATTTgtatatacatttttttaagaaataatgatTA
CTTTACGTCAAAGAAATATATGACTAATTTCAAATCttcttttgttcaat
tttatttttatggtTGATCAAGTAGTAACATTTCCTGAAacttgaaagta
atctctttaATTAATATTTTGCAGATTTTAACAGTAAATTGACTGCCGTG
GAAAATTTTACCAAAGTTGGGTCCCAAAACAGTTTAAAGAACGATACTTC
AGTTACCATGGGAACTAGAGGCCA

Coding sequence (CDS) from alignment at sc0000084:505179..509752+

>TCONS_00008287 ID=TCONS_00008287|Name=TCONS_00008287|organism=Clytia hemisphaerica|type=CDS|length=4518bp|location=Sequence derived from alignment at sc0000084:505179..509752+ (Clytia hemisphaerica)
atgggaGACGAAGAACAAAAAGGAGTAATAGCTGCTCGAGAAACTGGTCC
AGGGCCAGGAAGGTATGCTTTGCCATCAACATGTGGCTATGAAAAGCATG
ATATTACTAAAAGAATGCAACCATCATATTCTTTTGGTCAACGTCTTGAA
AGTTCCAtGTTCAAGAAAGACAGCAGCCCTGGTCCAGGATACATGGTCCA
TCCATCAATCACACGATATGGCAAAGATGGAACTCCTTGCTATTCAATAT
TAGGCAGAGCTAAAGAACAAAacTCATTCAAGACTCCATCCCCTGGAGCT
TATTCTCCCGAAAAAGTTCACCCGCAAGGTGAAAAACATGCACCTTCATA
CTCCATGGGTCAACGAACCAGATACCGAAAACGAGACACAACACCCTCAC
CTAATTCATATTCGCTTCCCCAATTGCTTGGTAACAAAGTTCCCTGCAAA
CATGCTTCCGCAGCTTTTTCAATGACTGGCCGTTCCAAAACTGGCAGCTT
TGCTGAAGATCTGGCTAAAACACCAGGGCCAGGACATTATAGGATTTTGG
ATCCAAATGTTGTCAAAAGACGTGGACCAGCTTATTCAATCTTAGGACGA
AGTTATATGCCTGGAGactCTACTCAGAAACCAGGACCTGGTGCTCACTT
TCCAGAGCGTGTTAGAAGCAATAAGAAGGCTGCACCATCATTCTCTCTTG
GTATTCGACATTCAGAATTCATCACACCTTTGATTATCGATGTCCATGAC
TAAatgggaGACGAAGAACAAAAAGGAGTAATAGCTGCTCGAGAAACTGG
TCCAGGGCCAGGAAGGTATGCTTTGCCATCAACATGTGGCTATGAAAAGC
ATGATATTACTAAAAGAATGCAACCATCATATTCTTTTGGTCAACGTCTT
GAAAGTTCCAtGTTCAAGAAAGACAGCAGCCCTGGTCCAGGATACATGGT
CCATCCATCAATCACACGATATGGCAAAGATGGAACTCCTTGCTATTCAA
TATTAGGCAGAGCTAAAGAACAAAacTCATTCAAGACTCCATCCCCTGGA
GCTTATTCTCCCGAAAAAGTTCACCCGCAAGGTGAAAAACATGCACCTTC
ATACTCCATGGGTCAACGAACCAGATACCGAAAACGAGACACAACACCCT
CACCTAATTCATATTCGCTTCCCCAATTGCTTGGTAACAAAGTTCCCTGC
AAACATGCTTCCGCAGCTTTTTCAATGACTGGCCGTTCCAAAACTGGCAG
CTTTGCTGAAGATCTGGCTAAAACACCAGGGCCAGGACATTATAGGATTT
TGGATCCAAATGTTGTCAAAAGACGTGGACCAGCTTATTCAATCTTAGGA
CGAAGTTATATGCCTGGAGactCTACTCAGAAACCAGGACCTGGTGCTCA
CTTTCCAGAGCGTGTTAGAAGCAATAAGAAGGCTGCACCATCATTCTCTC
TTGGTATTCGACATTCAGAATTCATCACACCTTTGATTATCGATGTCCAT
GACTAAatgggaGACGAAGAACAAAAAGGAGTAATAGCTGCTCGAGAAAC
TGGTCCAGGGCCAGGAAGGTATGCTTTGCCATCAACATGTGGCTATGAAA
AGCATGATATTACTAAAAGAATGCAACCATCATATTCTTTTGGTCAACGT
CTTGAAAGTTCCAtGTTCAAGAAAGACAGCAGCCCTGGTCCAGGATACAT
GGTCCATCCATCAATCACACGATATGGCAAAGATGGAACTCCTTGCTATT
CAATATTAGGCAGAGCTAAAGAACAAAacTCATTCAAGACTCCATCCCCT
GGAGCTTATTCTCCCGAAAAAGTTCACCCGCAAGGTGAAAAACATGCACC
TTCATACTCCATGGGTCAACGAACCAGATACCGAAAACGAGACACAACAC
CCTCACCTAATTCATATTCGCTTCCCCAATTGCTTGGTAACAAAGTTCCC
TGCAAACATGCTTCCGCAGCTTTTTCAATGACTGGCCGTTCCAAAACTGG
CAGCTTTGCTGAAGATCTGGCTAAAACACCAGGGCCAGGACATTATAGGA
TTTTGGATCCAAATGTTGTCAAAAGACGTGGACCAGCTTATTCAATCTTA
GGACGAAGTTATATGCCTGGAGactCTACTCAGAAACCAGGACCTGGTGC
TCACTTTCCAGAGCGTGTTAGAAGCAATAAGAAGGCTGCACCATCATTCT
CTCTTGGTATTCGACATTCAGAATTCATCACACCTTTGATTATCGATGTC
CATGACTAAatgggaGACGAAGAACAAAAAGGAGTAATAGCTGCTCGAGA
AACTGGTCCAGGGCCAGGAAGGTATGCTTTGCCATCAACATGTGGCTATG
AAAAGCATGATATTACTAAAAGAATGCAACCATCATATTCTTTTGGTCAA
CGTCTTGAAAGTTCCAtGTTCAAGAAAGACAGCAGCCCTGGTCCAGGATA
CATGGTCCATCCATCAATCACACGATATGGCAAAGATGGAACTCCTTGCT
ATTCAATATTAGGCAGAGCTAAAGAACAAAacTCATTCAAGACTCCATCC
CCTGGAGCTTATTCTCCCGAAAAAGTTCACCCGCAAGGTGAAAAACATGC
ACCTTCATACTCCATGGGTCAACGAACCAGATACCGAAAACGAGACACAA
CACCCTCACCTAATTCATATTCGCTTCCCCAATTGCTTGGTAACAAAGTT
CCCTGCAAACATGCTTCCGCAGCTTTTTCAATGACTGGCCGTTCCAAAAC
TGGCAGCTTTGCTGAAGATCTGGCTAAAACACCAGGGCCAGGACATTATA
GGATTTTGGATCCAAATGTTGTCAAAAGACGTGGACCAGCTTATTCAATC
TTAGGACGAAGTTATATGCCTGGAGactCTACTCAGAAACCAGGACCTGG
TGCTCACTTTCCAGAGCGTGTTAGAAGCAATAAGAAGGCTGCACCATCAT
TCTCTCTTGGTATTCGACATTCAGAATTCATCACACCTTTGATTATCGAT
GTCCATGACTAAatgggaGACGAAGAACAAAAAGGAGTAATAGCTGCTCG
AGAAACTGGTCCAGGGCCAGGAAGGTATGCTTTGCCATCAACATGTGGCT
ATGAAAAGCATGATATTACTAAAAGAATGCAACCATCATATTCTTTTGGT
CAACGTCTTGAAAGTTCCAtGTTCAAGAAAGACAGCAGCCCTGGTCCAGG
ATACATGGTCCATCCATCAATCACACGATATGGCAAAGATGGAACTCCTT
GCTATTCAATATTAGGCAGAGCTAAAGAACAAAacTCATTCAAGACTCCA
TCCCCTGGAGCTTATTCTCCCGAAAAAGTTCACCCGCAAGGTGAAAAACA
TGCACCTTCATACTCCATGGGTCAACGAACCAGATACCGAAAACGAGACA
CAACACCCTCACCTAATTCATATTCGCTTCCCCAATTGCTTGGTAACAAA
GTTCCCTGCAAACATGCTTCCGCAGCTTTTTCAATGACTGGCCGTTCCAA
AACTGGCAGCTTTGCTGAAGATCTGGCTAAAACACCAGGGCCAGGACATT
ATAGGATTTTGGATCCAAATGTTGTCAAAAGACGTGGACCAGCTTATTCA
ATCTTAGGACGAAGTTATATGCCTGGAGactCTACTCAGAAACCAGGACC
TGGTGCTCACTTTCCAGAGCGTGTTAGAAGCAATAAGAAGGCTGCACCAT
CATTCTCTCTTGGTATTCGACATTCAGAATTCATCACACCTTTGATTATC
GATGTCCATGACTAAatgggaGACGAAGAACAAAAAGGAGTAATAGCTGC
TCGAGAAACTGGTCCAGGGCCAGGAAGGTATGCTTTGCCATCAACATGTG
GCTATGAAAAGCATGATATTACTAAAAGAATGCAACCATCATATTCTTTT
GGTCAACGTCTTGAAAGTTCCAtGTTCAAGAAAGACAGCAGCCCTGGTCC
AGGATACATGGTCCATCCATCAATCACACGATATGGCAAAGATGGAACTC
CTTGCTATTCAATATTAGGCAGAGCTAAAGAACAAAacTCATTCAAGACT
CCATCCCCTGGAGCTTATTCTCCCGAAAAAGTTCACCCGCAAGGTGAAAA
ACATGCACCTTCATACTCCATGGGTCAACGAACCAGATACCGAAAACGAG
ACACAACACCCTCACCTAATTCATATTCGCTTCCCCAATTGCTTGGTAAC
AAAGTTCCCTGCAAACATGCTTCCGCAGCTTTTTCAATGACTGGCCGTTC
CAAAACTGGCAGCTTTGCTGAAGATCTGGCTAAAACACCAGGGCCAGGAC
ATTATAGGATTTTGGATCCAAATGTTGTCAAAAGACGTGGACCAGCTTAT
TCAATCTTAGGACGAAGTTATATGCCTGGAGactCTACTCAGAAACCAGG
ACCTGGTGCTCACTTTCCAGAGCGTGTTAGAAGCAATAAGAAGGCTGCAC
CATCATTCTCTCTTGGTATTCGACATTCAGAATTCATCACACCTTTGATT
ATCGATGTCCATGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004657XLOC_004657Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008287-proteinTCONS_00008287-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008287-exon-sc0000084-1491911889:505179..505399TCONS_00008287-exon-sc0000084-1491911889:505179..505399Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1510915933:505179..505399TCONS_00008287-exon-sc0000084-1510915933:505179..505399Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1575043694:505179..505399TCONS_00008287-exon-sc0000084-1575043694:505179..505399Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1491911889:507165..507275TCONS_00008287-exon-sc0000084-1491911889:507165..507275Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1510915933:507165..507275TCONS_00008287-exon-sc0000084-1510915933:507165..507275Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1575043694:507165..507275TCONS_00008287-exon-sc0000084-1575043694:507165..507275Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1491911889:507541..507654TCONS_00008287-exon-sc0000084-1491911889:507541..507654Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1510915933:507541..507654TCONS_00008287-exon-sc0000084-1510915933:507541..507654Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1575043694:507541..507654TCONS_00008287-exon-sc0000084-1575043694:507541..507654Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1491911889:507843..507953TCONS_00008287-exon-sc0000084-1491911889:507843..507953Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1510915933:507843..507953TCONS_00008287-exon-sc0000084-1510915933:507843..507953Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1575043694:507843..507953TCONS_00008287-exon-sc0000084-1575043694:507843..507953Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1491911889:508125..508358TCONS_00008287-exon-sc0000084-1491911889:508125..508358Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1510915933:508125..508358TCONS_00008287-exon-sc0000084-1510915933:508125..508358Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1575043694:508125..508358TCONS_00008287-exon-sc0000084-1575043694:508125..508358Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1491911889:508625..509752TCONS_00008287-exon-sc0000084-1491911889:508625..509752Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1510915933:508625..509752TCONS_00008287-exon-sc0000084-1510915933:508625..509752Clytia hemisphaericaexon
TCONS_00008287-exon-sc0000084-1575043694:508625..509752TCONS_00008287-exon-sc0000084-1575043694:508625..509752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:505179..509752 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.40262	8.63898	4.48679	3.72314	543.404	410.037	242.625	252.364	133.153	188.081	111.152	125.947	26.6308	23.1711	13.6777	16.069	15.388	23.7061	33.1042	32.2179	27.5017	29.6173	17.5796	18.5993	359.235	205.562	120.963	138.507	24.6167	30.641
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010736SHIPPO-rpt
Blast
[Close]
BLAST of TCONS_00008287 vs. Swiss-Prot (Human)
Match: ODF3A (Outer dense fiber protein 3 OS=Homo sapiens GN=ODF3 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 8.888e-57
Identity = 110/243 (45.27%), Postives = 146/243 (60.08%), Query Frame = 2 
Query:  194 KGVIAARETGPGPGRYALPSTCGYEKHDITKRMQPSYSFGQRLESSMFKKDSSPGPGYMVHPSITRYGKDGTPCYSILGRAKEQNSFKTPSPGAYSPEKVHPQGEKHAPSYSMGQRTRYRKRDTTPSPNSYSLPQLLGNKVPCKHASAAFSMTGRSKTGSFAEDLAKTPGPGHYRILDPNVVKRRGPAYSILGRSYMPGDSTQKPGPGAHFPERVRSNKKAAPSFSLGIRHSEFITPLIIDVH 922
            +G I A  + PGP +Y +P T G+ KH  TK   P+YSF  R    +  ++ SPGP Y V+P I R GKD  P YSILGR + +    TP PG Y PEK        APS+S+  RT+  + D+TP P +Y LP ++G     K +  +FS+ GRSK G F++DL KTPGP  YR  D  V K + P Y++  R   PGD T KPGPGAH PE+V   K  AP  + GI+HS+++TPL++DV 
Sbjct:   16 RGPIMALYSSPGP-KYLIPPTTGFMKHTPTKLRAPAYSF--RGAPMLLAENCSPGPRYNVNPKILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLVDVE 254
The following BLAST results are available for this feature:
BLAST of TCONS_00008287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ODF3A8.888e-5745.27Outer dense fiber protein 3 OS=Homo sapiens GN=ODF... [more]
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