TCONS_00008278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008278
Unique NameTCONS_00008278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008278 ID=TCONS_00008278|Name=TCONS_00008278|organism=Clytia hemisphaerica|type=transcript|length=2232bp
CTTTTATGAAATGACTAATTATACAAACTAAGCACATCATAGTTAAATAT
AATTGCCCACGCGTTAAGAATATCGCTTTTCGGCGCGATTATTTGACTTT
CGCAATATACTTCCGATTTCGCGATTACCGGTTGTTATCGTTCAGCCTAT
CCGGAATATTTCAGAATGCGGTaatatttacattttgaaaGGAGGCCAAC
TttcacagaaaaacacacaaCAGGAACAAGATGGCTGCATCAAAACTCAG
TCAACTTTTTAATCGTGGTAAGAAGCAGCCAAAATTAAGAAATCAAAGTA
GTCAAGGGGTTGATTCTTCAGATGATGAAGGTTACCAGGATCCTATCCAG
AATTGTCCTACTGAACCACCAACACGGATTCCCATCCCATCGTATCCTCC
TCCTCGACCAGCTTCACCGAAAAATCCAGTTGCAAACAGAGATGATTATG
CAGATCCATGGGACAGCAAAGGTTCTCGGACAATGAGTTCAGGAGGAGGT
GGTGCAATACCTCCCCCTAGAAGTATGGATACATATCAAGACCCATTTGA
TTCTCgtaaagaaaatgttaaatctTACGATCCAAGTGGTATGAGTTCTT
CACGCGAAGACTACGCTGACCCCTTTGATACAAAATTCAATAACGAGAAA
ACGAAAGCTCAACAGAAGCAAGCACCAACACATTCAGTGCCAGATGAGGA
AGAAGCTGACTACGATGAGCCTTACGAACAAAAACCATCTTTGAATGACA
CCTATGAAGACCCATGGGATACAAGACGTAGTATAGACTTAACTGAATCA
TTCACAGCCTCAACAAAACCTAAACCTGTGCCACCACCTGCTTCTCAgaa
tatcaaaataaacaataaaaggGATGATTATAGTGACCCATGGGATAGTA
AATTGTCAGCTAGTTTAACGACAGAAGAATCATATGACGATACTTACTCA
GAGCCATATGATAAAGGTAAAACAACAATTATGGACgagaaaagcaaaaa
gaaaccATCAACCAGTACCAAggatgatgatgacgatgatgatgatattt
atgatatgccttatgaagaaaaagaaatgatCGGCATCGCAAAACCACAA
CAAAATCAAGGGATCCAGAACTTCCGGTCTGCCTCTGTCTCATCAACAAA
ACCGGAACCACAGAGAGTGGCACCCAAACCACCACTTCCGTATTCCGGTA
CTGTGACGTCACCCACAGTACCGCCGCCATCCCAGCTGCAACAACCAACC
ACGTCACCACAGCAACCAGCACCTGGTGGTGGTGATTATGATTCCCCTTG
GGAATGGAGGGTTCCAAAGGTTGAACAAGAATTTAAACGTTTTTCAATTG
GTGGTGCTGACAAAAAACCTGCTGCTCCAGTAGCCGCCCCTCGTGGTGGA
CCCGCTGGTAAACGCCCAGGTGCCGCCCCACCACCGCCCATTAACCAAAA
CATCAACCCTGTACCAAAACCACAGCGAACTAATCCACCACCCAAACCAC
CCCAGCCGACTAATATCACCGAGAAAGAATACGAAGTAGACCCGACCATA
CCACTGGAAAACCAAGGTTGGTTCCATGGGCATATCCGGCGCGGTGAAGC
GGAAAGTTTACTTCACAACCAACCGGACTGTAGCTATTTGATACGGAACA
GTGAAAGCTCAAAACTCGACTTTTCGCTTTCGTTAAGAAATCGTGGTGCT
CCAATGCATTTGAAGATTTCCAATCGAGATGGCAAGTACATTCTTGGAAT
CAATTCACGACCTTACGACACCATCCCAGAGATGATCCACCATTATGCCA
TGCATATGCTGAATATCAAAGGTGCGGAACATGTCAAACTAAAGTACCCT
GTCTTTCAAGAGAATATGTATTTCACTGTCGAGCCTGGTAGCTGAGCTAT
GACGGTCATGTGACCTGCACTTAACCAATGACTTGAGACTGAATTCTCTC
AATGAATCTGTATATAGTGAAATGAAAATACAGTccaatgatttttaaaa
aagggaaattttaaacattttgcaTAAAATAATCTGTTATGGATTTTATG
TGGTGAAATCTTgatcaaaaatgaaatattatcNTCTGCCTATTATTATA
atatgcttatataagcataaaaaatgcttttcttgctccacattcgtgtc
aattcgatgtgaaaaagcttgcaaattaaaattgacgagtaagcaaacga
tatcactcttatttaaaaactaaaCCTTTAAT
Run BLAST on NCBI

transcript from alignment at sc0000084:310816..324513+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008278 ID=TCONS_00008278|Name=TCONS_00008278|organism=Clytia hemisphaerica|type=transcript|length=13698bp|location=Sequence derived from alignment at sc0000084:310816..324513+ (Clytia hemisphaerica)
CTTTTATGAAATGACTAATTATACAAACTAAGCACATCATAGTTAAATAT
AATTGCCCACGCGTTAAGAATATCGCTTTTCGGCGCGATTATTTGACTTT
CGCAATATACTTCCGATTTCGCGATTACCGGTTGTTATCGTTCAGCCTAT
CCGGAATATTTCAGAATGCGGTaatatttacattttgaaaGGAGGCCAAC
TttcacagaaaaacacacaaCAGGAACAAGATGGCTGCATCAAAACTCAG
TCAACTTTTTAATCGTGGTAAGAAGCAGCCAAAATTAAGAAATCAAAGTA
GTCAAGGGGTTGATTCTTCAGATGATGAAGGTTACCAGGATCCTATCCAG
AATTGTCCTACTGAACCACCAACACGGATTCCCATCCCATCGTATCCTCC
TCCTCGACCAGCTTCACCGAAAAATCCAGTTGTAAGTATATATGATTCCT
TCTTGTTGATTCTTCTCTATTTGGAAAGCAAAgcgattcaattaaaaaat
caatgatttAAATTTCTTCATgctattttaataaaattgtaGATCTCAGG
TTATTGTAAACCCAAAAACCTGGCAGCTAAAGATTCGTTGTGTCTGCGTt
ttatagttgttttggagaactgCTGTGTAGTaatccagacgtccgcgctc
gataggatcgatcatcggaacggctcgatgacggatcgNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcattatcgagct
agtatttcaatcgagtatattgattcgtcatcgattgttaatcgattcgt
catcgattgttaatcgattcgtcatcgattgttaattgattcgtcatcga
tcgttaatcgatttgttatcgatcgtaaattgAGTATGAGTAGTTAGTAA
gttagggtcgataagatcgataaaagatcgatgatagatcgataaataat
cgataactaatcataagctttaaaaaatcttgagtatcgatcctctatcg
atctcctatccggatcgttaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNtccgatgatcgatcctatcgagcgcggacgtctgga
gtAATTAGTAGTTACtctcaactgctttaacttggggcGATTAGTCGAAA
CATGTTAATATTGACTGTTGATATATATAACACAAATTAAAGGGATCTTC
GTCATCTCCGTAATCATAATCAACAGATTACAGTAGCggcatttcacaaa
aaaagaccGACTGTCGGCGAAATTCAAGGGCCAAACGGATCatctaaaca
aaaggaacacgagacataaacatcaggctgtttgttttggttaagaTTGT
TCTATAAAATAGCAAAGCAAAATACTGTcgactgctctaacttgggacta
tctgacaaaacatgggacggaaattcggccaccatttcatcgAACCTCct
aagtcatttgatttgagttaaggaacagggtattaaaaaatacacaattt
ctctttcgattttacagtaagttgAAAATACAGAcgagatatgcaacagt
cccatgtttcgaccaatcgtcccaagttagagcagttgacggtataaagg
gccattccagaatttgtctgtaacagggggcggacgacacaggatttccg
agggcaaaagttttcaccaaaattcgaaatttccaaggcgagagaagaaa
atgtatgaaattccaaggcaattgaattaaaaaaggcaaaaaagagtgga
atttccaatgcattttgtaaaagtacatggatttttatcagaatttccga
ccaccactggaaaaaaattatttccgaggctagagaaaattaaaaaatgc
acgtcgtccgaccggggggtaacaaaaattttctggaatggcccaaaagg
aggaaaagaaatatggaaagtaacatttgtcacaaaataaacgtctcaaa
aatcaatatttctggtaaatttcttagcgtcacaGACTCTAACCTCACCA
CCCCTTCGTGTCAATGGGAAGAattgatatgtgagtgacccctaactttc
actgatagtgcattttcattcaaaatgaccggatgccgattggagaatta
gaaaacgcccgccgcctatagcctggagatccatgctatgatttcttatt
ttatatactgatagcaaaatatataacatggtatgggctgacagtttgaa
tttcccagatcataataacggttgaaaacatatagccaatcaaattttgt
tattcttttactggtcactttcttagagaaagctcAAGTCCCGAAATTTG
Gactttattttagtaagtgaggacagcgctaaatttgaatttcccactgt
aaattttttgaagcaGAAATCTACCTCACAGCTCATACCCATCCTGTATA
TATCGTATTATAAAAAGacaggcgctgtggtatagtggtcattgaccttg
gttactgcacaggcgactgaggttcaattcccactcgcagcggtttactt
ggcaagtgaatgaaccttcgcccgggtcaacccatgccatgtgaggggaa
ttgggtagtcagtccaaggtgctgacggggcgctcattgaaagcgtctat
agttgcgaaagcctcaaagcctcctgcaactcaaccaaatagaaaaaaaa
aaggatGGGTCTCCTGTCTAAACCGCCTATCGCCGATgtgattaacaaat
aacaagtgtgtaacttgctgcgcgagtgacgtcaaacgctccatggtttt
gccactaatttagTCTTCTTCCTTCCACAcagtgtgttccactacggatt
tttttcatatttcgatttaaaagcctactcggaaAAATCGTGGATTTTTT
AATACACCGTTCATTACTAactcattaaaattttaaaaataattcttaTA
ATTCTTATATTCAATTATATAATAATTCTTTATAATTAATTCTATAATTC
TTATATGCAGTCTAGACTaattaaactcctatatcaggattagaaactag
gctagtcttaactcttacctcttttatctttgcCTTTTTGcatcaataca
atgctgacaagttgacataACACATTGACAAATAATCCCTGTGAGAAGTT
TGTATCAAAATcggcaacaaaaacaaaagtggttccttctactgattgct
ttgtGACGCTCCGttgcctttcagtgccttgtcTTGTCTGACGGGCTGCT
AAAAATCTCTCCTTTCATAACAcctcttttatttgtttcaatccgcgATC
CTAAGGTGAgactaccgtgagatcgggtaacttgcatcagtggagggaaa
cttgcatagccatcaaatgcctgaccaatcaaagcagcaaaatttcaaaa
caaatgaactatgcagTTTGCAGTTCTTCTCTATCATTTTAGAATCTCAT
ATTTGCCGCATGAGTATTTTTGGCCAACAGAATCGCGAGTAAATAAAACA
GCTTGCTtggataataaaaaatcatgtgAGATCATAAATTTCGAGATGTT
GGAAATTAGACGTTTCTCGAACGCTGTGGGCGTGTAATCTCAAATCTAAT
AATGATATTTaaacataattatgcatgacttTACTTTTGATTTACAACCC
ACAAATTTTGTATATcagctttgttttgatttaactttgaattttaatga
catttgagggctatgcagaagaacttaaaatattactttaaatattttca
ttttgaagaattggtgcaaaaaagtgaaacatggagaagtttcatttttt
attgctttaTAAATTGAAACGGGGGATTTAGAAAAtcttctatgtttagt
ttttgcataaacccctgtaactatgggcaagcaccccgttgctaagatgt
tggcttgaaatcgaaaatgaaaccactgaaaacaaaagtgaaatcCGCTG
GCACTCCAAAGGTGTGACTAACTGTATTGAATAATTAAATACTGttgcaa
atttctttttaacaataacATTACCTTATTGATATGCCTTTAAACACAGC
TGTTATCTatagacaagataatttatcccaTTTGTACTGGCTGAGGGTAA
GTAATGTATGCTGTTATGTTAAGTTAAGAATCCCCCCCCAAACAAAAACC
AATTTTTGGCTTTTACGACCTCTTtgaaacaggggggggggtcagggcCC
AGGATACCAAACCAGGGCCCAATAACCTGacttttcaaagtttaaaagta
gtagacaccaccaccccctaaattggtatcaataccaacttaaaaacccc
aattttctaaaaaggggggacccacccccctaaATTAGTATCGATACGAa
catgaaaatcctgattttctgaaaaaggggggacccagccccctaaattg
gtatcgatacgaaCTTGAAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccctcattttggtatcg
atatcaacttgactttttgaaatttgggtttggtatctggtgcccccccc
cccccccctgtttgaAAACCATCCAGATCTACAAATCTCAATCCAGAAAG
TCAGAATGCCTTTATAAAGAGGGAAGCAGCTTAAATCTTAAGATTTATGA
TAATTTTGTATTTAATATTTTCTTCTAATCCAGGCAAACAGAGATGATTA
TGCAGATCCATGGGACAGCAAAGGTTCTCGGACAATGAGTTCAGGAGGAG
GTGGTGCAATACCTCCCCCTAGAAGTATGGATACATATCAAGACCCATTT
GATTCTCgtaaagaaaatgttaaatctTACGATCCAAGTGGTATGAGTTC
TTCACGCGAAGACTACGCTGACCCCTTTGATACAAAATTCAATAACGAGA
AAACGAAAGCTCAACAGAAGCAAGCACCAACACATTCAGTGCCAGATGAG
GAAGAAGCTGACTACGATGAGCCTTACGAACAAAAACCATCTTTGAATGA
CACCTATGAAGACCCATGGGATACAAGACGTAGTATAGACTTAACTGAAT
CATTCACAGCCTCAACAAAACCTAAACCTGTGCCACCACCTGCTTCTCAg
aatatcaaaataaacaataaaaggGATGATTATAGTGACCCATGGGATAG
TAAATTGTCAGCTAGTTTAACGACAGAAGAATCATATGACGATACTTACT
CAGAGCCATATGATAAAGGTAAAACAACAATTATGGACgagaaaagcaaa
aagaaaccATCAACCAGTACCAAggatgatgatgacgatgatgatgatat
ttatgatatgccttatgaagaaaaagaaatgatCGGCATCGCAAAACCAC
AACAAAATCAAGGGTAATTTTGAACCTTTATTCTTCTCAGTATAATCTAC
CTTTCTAAGAAGGTGTGTTTAAAGATTTCGAGAGGGAAGTTTTCTAGAAG
GATGATAATCAATAAGTGAGAGGCAGAAACACGTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNg
actcctgaaaatgaaaacaagtttttctcattctaacacaacgtaaatta
agtttcttgaactaaattggcaaaatgtatcaaattcataaaactagtTC
GAATAAACTAGACTAGATAAAAAATTCATTGTATTAGGCATGCCTAGAGT
CTTTGTAACATATACGATGAACGTTATGTACAGAAAAGTTTTATCACGAC
taaaaaaagtttcagtttgttcaactctagttttgaatgaattttggttg
attgaaaggattgagagcagcaaaagttagataaaaatttaatttcaatt
atagaatgaagatgcttttatatggaatcagggtatagtgtaaacgattc
aaataagtttttatacttaattatacaacattttaagtcagataccaatt
tcaaattcagccagattctacaaaaattaaaaaaaggggtacccaccatc
tcattttggtatcgatatcaacttaaagattccctaattttcaaaagaag
ggggacccaccccctcattttggtatcgatatcaacttgactttttgaaa
tttgggtttggtatctggtgccttaccccccccccctgtttgaAAACCAT
CCAGATCTACAAATCTCAATCCAGAAAGTCAGAATGCCTTTATAAAGAGG
GAAGCAGCTTAAATCTTAAGATTTATGATAATTTTGTATTTAATATTTTC
TTCTAATCCAGGCAAACAGAGATGATTATGCAGATCCATGGGACAGCAAA
GGTTCTCGGACAATGAGTTCAGGAGGAGGTGGTGCAATACCTCCCCCTAG
AAGTATGGATACATATCAAGACCCATTTGATTCTCgtaaagaaaatgtta
aatctTACGATCCAAGTGGTATGAGTTCTTCACGCGAAGACTACGCTGAC
CCCTTTGATACAAAATTCAATAACGAGAAAACGAAAGCTCAACAGAAGCA
AGCACCAACACATTCAGTGCCAGATGAGGAAGAAGCTGACTACGATGAGC
CTTACGAACAAAAACCATCTTTGAATGACACCTATGAAGACCCATGGGAT
ACAAGACGTAGTATAGACTTAACTGAATCATTCACAGCCTCAACAAAACC
TAAACCTGTGCCACCACCTGCTTCTCAgaatatcaaaataaacaataaaa
ggGATGATTATAGTGACCCATGGGATAGTAAATTGTCAGCTAGTTTAACG
ACAGAAGAATCATATGACGATACTTACTCAGAGCCATATGATAAAGGTAA
AACAACAATTATGGACgagaaaagcaaaaagaaaccATCAACCAGTACCA
Aggatgatgatgacgatgatgatgatatttatgatatgccttatgaagaa
aaagaaatgatCGGCATCGCAAAACCACAACAAAATCAAGGGTAATTTTG
AACCTTTATTCTTCTCAGTATAATCTACCTTTCTAAGAAGGTGTGTTTAA
AGATTTCGAGAGGGAAGTTTTCTAGAAGGATGATAATCAATAAGTGAGAG
GCAGAAACACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNccccctcattttggtatcgatatcaacttgactt
tttgaaatttgggtttggtatctggtgcccccccccccccccctgtttga
AAACCATCCAGATCTACAAATCTCAATCCAGAAAGTCAGAATGCCTTTAT
AAAGAGGGAAGCAGCTTAAATCTTAAGATTTATGATAATTTTGTATTTAA
TATTTTCTTCTAATCCAGGCAAACAGAGATGATTATGCAGATCCATGGGA
CAGCAAAGGTTCTCGGACAATGAGTTCAGGAGGAGGTGGTGCAATACCTC
CCCCTAGAAGTATGGATACATATCAAGACCCATTTGATTCTCgtaaagaa
aatgttaaatctTACGATCCAAGTGGTATGAGTTCTTCACGCGAAGACTA
CGCTGACCCCTTTGATACAAAATTCAATAACGAGAAAACGAAAGCTCAAC
AGAAGCAAGCACCAACACATTCAGTGCCAGATGAGGAAGAAGCTGACTAC
GATGAGCCTTACGAACAAAAACCATCTTTGAATGACACCTATGAAGACCC
ATGGGATACAAGACGTAGTATAGACTTAACTGAATCATTCACAGCCTCAA
CAAAACCTAAACCTGTGCCACCACCTGCTTCTCAgaatatcaaaataaac
aataaaaggGATGATTATAGTGACCCATGGGATAGTAAATTATCAGCTAG
TTTAACGACAGAAGAATCATATGACGATACTTACTCTGAACCATATGATA
AAGGTAAAACAACAATTATGGACgagaaaagcaaaaagaaaccATCAACC
AGTACAAAggatgatgatgacgatgatgatgatatttatgatatgcctta
tgaagaaaaagaaatgatCGGCATCGCAAAACCACAACAAAATCAAGGGT
AATTTTGAACCTTTATTCTTCTCAGTATAATCTACCTTTCTAAGAAGGTG
TGTTTAAAGATTTCGAGAGGGAAGTTTTCTAGAAGGATGATAATCAATAA
GTGAGAGGCAGAAACACGTTCTGTATAATGTTTGCATGATTGTCTTGTTC
TAACTAAAAAttcgatatatttttcaaaacatatattcagGATCCAGAAC
TTCCGGTCTGCCTCTGTCTCATCAACAAAACCGGAACCACAGAGAGTGGC
ACCCAAACCACCACTTCCGTATTCCGGTACTGTGACGTCACCCACAGTAC
CGCCGCCATCCCAGCTGCAACAACCAACCACGTCACCACAGCAACCAGCA
CCTGGTGGTGGTGATTATGATTCCCCTTGGGAATGGAGGGTTCCAAAGGT
AAGCAGAGAGTGGTTTTCTGATTTGTTGATGTGTATTTTCGAAGTGGGAT
TTGAAAGGTTTGCTTTCTTAAGCGTATGTAGAGTTGTAAAGTTAATGTTT
CTGCATTTCaatttttgttggttttttaatttttttgaaatgttattTAT
TAATGAGAAACTGCAATGAATGCatgaatgaattttttatatttttgaag
gGAAATCCCATAATTTTTGGGGTAAACTTTCAGTGAACTCTTTGCAGTGT
TTTTCTGGAGGAAAATGTTTCTATAATAATACGTTTTTTAACACCCCTGC
AGTAAGTATATTTTTGTATctatgtatttttgaaggaaaattttgttCAG
AAATTGTTAAGAGTCAAACAGTTATAGTAaggatatttttctttattatt
ttgatttcaGGTTGAACAAGAATTTAAACGTTTTTCAATTGGTGGTGCTG
ACAAAAAACCTGCTGCTCCAGTAGCCGCCCCTCGTGGTGGACCCGCTGGT
AAACGCCCAGGTGCCGCCCCACCACCGCCCATTAACCAAAACATCAACCC
TGTACCAAAACCACAGCGAACTAATCCACCACCCAAACCACCCCAGCCGA
CTAATATCACCGAGAAAGAATACGAAGTAGACCCGACCATACCACTGGAA
AACCAAGGGTAAGTTTCTCACATTTTTAAGACTACACATAACGGTAATAA
TAGCACTTGTTAGACTCTAAGTACATTTTCCCCGAAAATTGCTTATGGAG
TTTGTCTCCTCTTTTAAAGTATTTCAATCAATGTTGCACCTTTATCGTCT
GTAGACACAACATCACCCGGTTAAGTTTTCTAACATAGGTTTTCGTTTAA
ATATCAAGCTTTTAAAGGACTCTCCGTCTAGATTGTCCAGAGCTGTTTTT
AAATAATGCAACTTTTTAAAGGAATGTGCTTTTGCCTATAATCCTTCTAT
ATGACTCAGCACTTTTCAATGTTTCTCgtgggaaattttattttttaata
tatcaaattttgtttgatttcagtgctaaactttaaataaaaagtgtAAC
TGAATAACACATCCATGCTAAATCTAACTAAAATTTACTTAAAATTAATG
TTTTAGAAAGTAAGTGTAAAATTCTTTTGGAGGTTAAACTCATTTAAAAA
ACGCTTTTAAGACAATCCAATATTCAATATAAGCAATACCCTCTTATCAC
TTCCTAGCCAAGAAATGTTCGACTTTGATTACTTTTATAATTGATAACTT
CCCAGATTCCATGACTTTCATATCAATAACTTTATCATTGCCTTTTAATA
ACTCCGCTGACACTTTCCTTTTGTACCAGCTTAAAAATGTAATAAAGTGT
GGTTTAAACGGCCTTGGGAATAGTTTTCAACAAATCTAAATGAGagctta
tttttcaaagaaagtttTCTTTCGTCCATACCAAAGTAACGATTGGAAAG
CCTGGTATTTAGAGACGGAATTTTGTCTATCAACCTTTCCAGCAAATCTT
TACGAGTGTTTCGTACTTTTAAAATGAACAGGAGCAACTCTGCCTTCGTC
ACTTGTTGCCTCTGTGAGACAGCAACCTTTACTGAACTTTTAAAATTCGA
TAGTTTCTGATATTATTAACTTTTCTCTTCTCCAGTTGGTTCCATGGGCA
TATCCGGCGCGGTGAAGCGGAAAGTTTACTTCACAACCAACCGGACTGTA
GCTATTTGATACGGAACAGTGAAAGCTCAAAACTCGACTTTTCGCTTTCG
TTAAGGTATATACATCTTATTAGAATTTCCATCTCCGACAAAAGATCTGT
AGCCTATCCAAAGTACCTAAAGAAATGCAATCTTTCAATTGACCTCAAGT
GGTTATTGCTAAAATGCGCAGTAGAGTTTGTTttactcgaacctctataa
gtAGAATGACTCCTTCACccaacaagttttctcgtcccttcagctAACAA
TGCCTTATTAAGCCTACTTTATAACTCAAacttccataactcgaactaaT
TTGTGTTCCCTGTGCTTGTTTGAGTTTTTGAGATTCTACTATACCTACAA
ACTTGCTAAAGTTCATTGTGACTTTTAGTGCTTGTGATATATGACTTTCC
AAGATTAAAATTTCAAACGACtgaaaatgcaaaataatttcGATTTCTTT
AAGAAATCGTGGTGCTCCAATGCATTTGAAGATTTCCAATCGAGATGGCA
AGTACATTCTTGGAATCAATTCACGACCTTACGACACCATCCCAGAGATG
ATCCACCATTATGCCATGCATATGCTGAATATCAAAGGTGCGGAACATGT
CAAACTAAAGTACCCTGTCTTTCAAGAGAATATGTATTTCACTGTCGAGC
CTGGTAGCTGAGCTATGACGGTCATGTGACCTGCACTTAACCAATGACTT
GAGACTGAATTCTCTCAATGAATCTGTATATAGTGAAATGAAAATACAGT
ccaatgatttttaaaaaagggaaattttaaacattttgcaTAAAATAATC
TGTTATGGATTTTATGTGGTGAAATCTTgatcaaaaatgaaatattatcN
TCTGCCTATTATTATAatatgcttatataagcataaaaaatgcttttctt
gctccacattcgtgtcaattcgatgtgaaaaagcttgcaaattaaaattg
acgagtaagcaaacgatatcactcttatttaaaaactaaaCCTTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004652XLOC_004652Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008278-exon-sc0000084-1491911889:310816..311246TCONS_00008278-exon-sc0000084-1491911889:310816..311246Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1510915933:310816..311246TCONS_00008278-exon-sc0000084-1510915933:310816..311246Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1575043694:310816..311246TCONS_00008278-exon-sc0000084-1575043694:310816..311246Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1491911889:317099..317778TCONS_00008278-exon-sc0000084-1491911889:317099..317778Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1510915933:317099..317778TCONS_00008278-exon-sc0000084-1510915933:317099..317778Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1575043694:317099..317778TCONS_00008278-exon-sc0000084-1575043694:317099..317778Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1491911889:321606..321813TCONS_00008278-exon-sc0000084-1491911889:321606..321813Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1510915933:321606..321813TCONS_00008278-exon-sc0000084-1510915933:321606..321813Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1575043694:321606..321813TCONS_00008278-exon-sc0000084-1575043694:321606..321813Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1491911889:322226..322473TCONS_00008278-exon-sc0000084-1491911889:322226..322473Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1510915933:322226..322473TCONS_00008278-exon-sc0000084-1510915933:322226..322473Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1575043694:322226..322473TCONS_00008278-exon-sc0000084-1575043694:322226..322473Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1491911889:323451..323570TCONS_00008278-exon-sc0000084-1491911889:323451..323570Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1510915933:323451..323570TCONS_00008278-exon-sc0000084-1510915933:323451..323570Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1575043694:323451..323570TCONS_00008278-exon-sc0000084-1575043694:323451..323570Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1491911889:323969..324513TCONS_00008278-exon-sc0000084-1491911889:323969..324513Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1510915933:323969..324513TCONS_00008278-exon-sc0000084-1510915933:323969..324513Clytia hemisphaericaexon
TCONS_00008278-exon-sc0000084-1575043694:323969..324513TCONS_00008278-exon-sc0000084-1575043694:323969..324513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:310816..324513 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.294364	0.16189	0.442902	0.357942	6.45337	4.35368	3.00155	4.17405	0.486451	2.253	1.20649	0.951416	0.515617	0.572006	0.337964	0.317544	0.527689	0.388464	0.203665	0.402216	0.661613	0.306289	0.270502	0.462889	2.29246	4.2274	0.685555	0.50804	0.431142	0.653968
Blast
[Close]
BLAST of TCONS_00008278 vs. Swiss-Prot (Human)
Match: SHB (SH2 domain-containing adapter protein B OS=Homo sapiens GN=SHB PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.003e-32
Identity = 59/106 (55.66%), Postives = 79/106 (74.53%), Query Frame = 3 
Query: 1536 VDPTIPLENQGWFHGHIRRGEAESLLHNQPDCSYLIRNSESSKLDFSLSLRNRGAPMHLKISNRDGKYILGINSRPYDTIPEMIHHYAMHMLNIKGAEHVKLKYPV 1853
            VDP +PLE Q W+HG I RG+AE+LL    +CSYL+RNS++SK D+SLSLR+    MH+K++    KY+LG NS P+D++PE+IH+Y    L IKGAEH+ L YPV
Sbjct:  399 VDPAVPLEKQIWYHGAISRGDAENLLRLCKECSYLVRNSQTSKHDYSLSLRSNQGFMHMKLAKTKEKYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPV 504
The following BLAST results are available for this feature:
BLAST of TCONS_00008278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SHB8.003e-3255.66SH2 domain-containing adapter protein B OS=Homo sa... [more]
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