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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008275 ID=TCONS_00008275|Name=TCONS_00008275|organism=Clytia hemisphaerica|type=transcript|length=2278bpRun BLAST on NCBI protein sequence of TCONS_00008275-protein >TCONS_00008275-protein ID=TCONS_00008275-protein|Name=TCONS_00008275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp MADVTEVRDKFHYVYSCDLDAFVQLKIGNLEGKRNLQSYKELLNDPQLKYRun BLAST on NCBI transcript from alignment at sc0000084:263096..300404+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008275 ID=TCONS_00008275|Name=TCONS_00008275|organism=Clytia hemisphaerica|type=transcript|length=37309bp|location=Sequence derived from alignment at sc0000084:263096..300404+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000084:263096..300404+ >TCONS_00008275 ID=TCONS_00008275|Name=TCONS_00008275|organism=Clytia hemisphaerica|type=CDS|length=28176bp|location=Sequence derived from alignment at sc0000084:263096..300404+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008275 vs. Swiss-Prot (Human)
Match: PK3C3 (Phosphatidylinositol 3-kinase catalytic subunit type 3 OS=Homo sapiens GN=PIK3C3 PE=1 SV=1) HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0 Identity = 308/576 (53.47%), Postives = 403/576 (69.97%), Query Frame = 3
Query: 81 DKFHYVYSCDLDAFVQLKIGNLEGKRNLQSYKELLNDPQLKYSGLYQSSCPDLYATVTVYYDCKPMFMPVRTAYKAFTTRWNWNEWVQLPVKYQDLPRNAQIGITIWDVYDAKKTRPVGATTVSVFGKHGILRQGIHDLRVWPGKVADGD--AGTPGKFIKE-SANEMXXXXXXXXXXXXGHILKVDWLDRLTFREIELVNEREKRHSEFFYLMVEFPRIVHTGTELAVVYFEQDADDIEYAQIYPEIVLVPDPEILQENLVESKHHRLTRSIRSGTMSRELKPNARKRDQLANIVTYPPTTHLTSEEKDLIWQFRFYLTSQKKALTKFLKCVNWNHPSETKQAIELLHKWDPIDPVDALELLTPQFTNKTVRQYAVSRLKQANDEDXXXXXXXXXXXXTYD-VDDHNNDVITQRKGNTEPEGDENTDKNMELIEEGLTESNEQQQETDEEANNDVTDHVXXXXXXXXXXXXXXXXEEPLDLASFLVSRACSNDQIANFFYWYLLVECKG----GRDQKIKDMYLGTMKRFSKELLTGNHECRRRRSMLGREQKFLDKITELVKQIQQFSGNRKKK 1784
+KFHY+YSCDLD VQLKIG+LEGKR +SYK +L DP LK+SGLYQ +C DLY T V+ + KP+ +PVRT+YKAF+TRWNWNEW++LPVKY DLPRNAQ+ +TIWDVY K PVG TTVS+FGK+G+ RQG+HDL+VWP ADG TPG+ S ++MS+LAKL+K H +GH++KVDWLDRLTFREIE++NE EKR S F YLMVEF + E +VY+E+D D+ E+V VPDP++ ENLVESKHH+L RS+RSG +LKPNA RDQL IV+YPPT LT EE+DL+W+FR+YLT+Q+KALTKFLKCVNW+ P E KQA+ELL KW P+D D+LELL+ +TN TVR+YAV+RL+QA+DEDLL+YLLQLVQAL Y+ DD N + +K D + + + G+ N + ++ + + + S + + E DL +FL+SRAC N +AN+ YWY++VEC+ RD K +MYL M+RFS+ LL G+ R RS+L +Q F+D++ L+K +Q+ SGNRKKK
Sbjct: 5 EKFHYIYSCDLDINVQLKIGSLEGKREQKSYKAVLEDPMLKFSGLYQETCSDLYVTCQVFAEGKPLALPVRTSYKAFSTRWNWNEWLKLPVKYPDLPRNAQVALTIWDVYGPGKAVPVGGTTVSLFGKYGMFRQGMHDLKVWPNVEADGSEPTKTPGRTSSTLSEDQMSRLAKLTKAHRQGHMVKVDWLDRLTFREIEMINESEKRSSNFMYLMVEFRCVKCDDKEYGIVYYEKDGDESSPILTSFELVKVPDPQMSMENLVESKHHKLARSLRSGPSDHDLKPNAATRDQLNIIVSYPPTKQLTYEEQDLVWKFRYYLTNQEKALTKFLKCVNWDLPQEAKQALELLGKWKPMDVEDSLELLSSHYTNPTVRRYAVARLRQADDEDLLMYLLQLVQALKYENFDDIKNGLEPTKK-------DSQSSVSENVSNSGI---NSAEIDSSQIITSPLPSVSSPPPASKTKEVPDGENLEQ-DLCTFLISRACKNSTLANYLYWYVIVECEDQDTQQRDPKTHEMYLNVMRRFSQALLKGDKSVRVMRSLLAAQQTFVDRLVHLMKAVQRESGNRKKK 569 The following BLAST results are available for this feature:
BLAST of TCONS_00008275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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