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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008260 ID=TCONS_00008260|Name=TCONS_00008260|organism=Clytia hemisphaerica|type=transcript|length=1937bp
ttccaGTGTGGAATCCATGCAAAAGCCACACCGAAGATATTTTGAGGATC
AAGAAGGTTACACCCAATTAAGGGCATTctcacgccgaatatattcggcg
tactGTGTATGAATTCCAGACTGGGGTGTATTCATGGAAGATCTTTCAAT
ATTTAGAACAGACCCCCCAACTTTCAGGGTACTCATTTTATACACAGAAC
AGCTCAAACAGTGTGATCATATCTTCAAGTGCCAATATTCCACTCCGTAC
ACCCTTTCAGCTGGAAATATAAGCCTAGAACAGATAATGAAAATTACCAT
CAGTTGGTCCCAGTggagttggtctaatctcgacatccctctcttctaat
ttcgacgcCCTTTTtcagagataggaataataggaaggtcaggATCACCA
TAGCTGTCACATTTGCCTTGCAAAAATGTGGGAGAGCTTCTAGTCAGAAA
AACTTTCCCcgataatccaatttttctgaatcggaaaatcaggaaatcga
GGGAATTTCCCTGTGAAGTctgattttattggaaattttttttggaaaat
cggaGAAATTCAGGAAATTTTGACATGCCGCTTTctgaaaatctgatttt
tttgcaggaagtcggaaaatttttcgaaatgcGGGAAATGCgggagaaaa
tcctgaaaatgcagGGAGATTTAGCTGAATTATTTTCCTGTGGGAAAAAA
TATCAGCATGCGGGAGTCTCCGGCCcaatgcgggagagttgacagctagg
atcactgatagacaaaagatttctTCCTCCCTGATCGCTAAGCAAAAAAG
ATTCCGATTCCgaccttcatattattcctatccaTCTCTGAAGAAGGGTG
CCAAatttagaagagggatgttgacattagaccaacttacggtagtttTC
TtggaattgaaaaagaaaaatctataGAAAAGATCAACTTTCAGACTTTG
ATTTCTATTTAAAACAGATCTAAATTTCAAGGTAGGtagattttaagaac
agatcTACATTTTCCTCCAGGACGGCGTGaggtgtcaaaattttttccgA
TATCCTTTAGCTTAGGCTGACATACCTTGGTTCAGAACAAGCCTGTACAA
CTTccaaaaaagtgacaaaattgaTTGGGAAGCTATTAACATAGAGTTAT
ATCCTATCTTATCTCTTAGTTATTATTATCTGGACACTAATTTTGATGAC
CCAAATTGTTAATACACCAGTTTCCTGGAAAAATGCCTACTGTGAAAAAG
CATTTTACCAACTAGAAATccgccaaaaaaattttcaaaggttcCAAGAG
ATCTTTGTATTCTTATGAGGAAGCCTTTGAAACTCTCCCCAAAAAGAATT
TTAGAAgtaacaaaataaaacagaaaataccataagttggtctaacaTTG
ACTTCCCTCATCCAATTTGGAAACcctctttagagacaggaataaccAGG
GGGGATCTTTCATAAAACTGCTAAAGCTATTATAAGAAGGgggaattttt
taaagaatggaTGGGGGTGGAGCTGGAGGTCCTCTTTTGATTCCAAATTG
GAAGTTCTGGTTCTGTCTCGCCAGCCATGAACCTTAGACAGCTGTTTTGG
AAAACATAGAGTTTATCAATATCTCTCTTTTTGAGGGATTAGGTTTCACA
GGCATAGATAGTTAAATTGGTATTATCAGCGCGTAAAAAAGTCTCAACTT
GATTTAGTAGGGGAGGGAGGTCATTTCTAGACAAtatgttttgtttcaat
ttaCCAAAAGCAACTAATGCTTTAAGCTATTTTCTGCATGCAACATCATC
ACTAGTTACTTTTACTTTTGGTTACTTCGAGCATATATTATTTCTGGCAA
AAATCTTTTGATCCACACCACACAATCTTTATCAAATCCACAAGTCCTGA
AGACAAAATGGAAAAGCAGAGAGattttgtttctaaa Run BLAST on NCBI transcript from alignment at sc0000084:128827..130763+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008260 ID=TCONS_00008260|Name=TCONS_00008260|organism=Clytia hemisphaerica|type=transcript|length=1937bp|location=Sequence derived from alignment at sc0000084:128827..130763+ (Clytia hemisphaerica)
ttccaGTGTGGAATCCATGCAAAAGCCACACCGAAGATATTTTGAGGATC
AAGAAGGTTACACCCAATTAAGGGCATTctcacgccgaatatattcggcg
tactGTGTATGAATTCCAGACTGGGGTGTATTCATGGAAGATCTTTCAAT
ATTTAGAACAGACCCCCCAACTTTCAGGGTACTCATTTTATACACAGAAC
AGCTCAAACAGTGTGATCATATCTTCAAGTGCCAATATTCCACTCCGTAC
ACCCTTTCAGCTGGAAATATAAGCCTAGAACAGATAATGAAAATTACCAT
CAGTTGGTCCCAGTggagttggtctaatctcgacatccctctcttctaat
ttcgacgcCCTTTTtcagagataggaataataggaaggtcaggATCACCA
TAGCTGTCACATTTGCCTTGCAAAAATGTGGGAGAGCTTCTAGTCAGAAA
AACTTTCCCcgataatccaatttttctgaatcggaaaatcaggaaatcga
GGGAATTTCCCTGTGAAGTctgattttattggaaattttttttggaaaat
cggaGAAATTCAGGAAATTTTGACATGCCGCTTTctgaaaatctgatttt
tttgcaggaagtcggaaaatttttcgaaatgcGGGAAATGCgggagaaaa
tcctgaaaatgcagGGAGATTTAGCTGAATTATTTTCCTGTGGGAAAAAA
TATCAGCATGCGGGAGTCTCCGGCCcaatgcgggagagttgacagctagg
atcactgatagacaaaagatttctTCCTCCCTGATCGCTAAGCAAAAAAG
ATTCCGATTCCgaccttcatattattcctatccaTCTCTGAAGAAGGGTG
CCAAatttagaagagggatgttgacattagaccaacttacggtagtttTC
TtggaattgaaaaagaaaaatctataGAAAAGATCAACTTTCAGACTTTG
ATTTCTATTTAAAACAGATCTAAATTTCAAGGTAGGtagattttaagaac
agatcTACATTTTCCTCCAGGACGGCGTGaggtgtcaaaattttttccgA
TATCCTTTAGCTTAGGCTGACATACCTTGGTTCAGAACAAGCCTGTACAA
CTTccaaaaaagtgacaaaattgaTTGGGAAGCTATTAACATAGAGTTAT
ATCCTATCTTATCTCTTAGTTATTATTATCTGGACACTAATTTTGATGAC
CCAAATTGTTAATACACCAGTTTCCTGGAAAAATGCCTACTGTGAAAAAG
CATTTTACCAACTAGAAATccgccaaaaaaattttcaaaggttcCAAGAG
ATCTTTGTATTCTTATGAGGAAGCCTTTGAAACTCTCCCCAAAAAGAATT
TTAGAAgtaacaaaataaaacagaaaataccataagttggtctaacaTTG
ACTTCCCTCATCCAATTTGGAAACcctctttagagacaggaataaccAGG
GGGGATCTTTCATAAAACTGCTAAAGCTATTATAAGAAGGgggaattttt
taaagaatggaTGGGGGTGGAGCTGGAGGTCCTCTTTTGATTCCAAATTG
GAAGTTCTGGTTCTGTCTCGCCAGCCATGAACCTTAGACAGCTGTTTTGG
AAAACATAGAGTTTATCAATATCTCTCTTTTTGAGGGATTAGGTTTCACA
GGCATAGATAGTTAAATTGGTATTATCAGCGCGTAAAAAAGTCTCAACTT
GATTTAGTAGGGGAGGGAGGTCATTTCTAGACAAtatgttttgtttcaat
ttaCCAAAAGCAACTAATGCTTTAAGCTATTTTCTGCATGCAACATCATC
ACTAGTTACTTTTACTTTTGGTTACTTCGAGCATATATTATTTCTGGCAA
AAATCTTTTGATCCACACCACACAATCTTTATCAAATCCACAAGTCCTGA
AGACAAAATGGAAAAGCAGAGAGattttgtttctaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008260-exon-sc0000084-1491911889:128827..130763 | TCONS_00008260-exon-sc0000084-1491911889:128827..130763 | Clytia hemisphaerica | exon |
| TCONS_00008260-exon-sc0000084-1510915933:128827..130763 | TCONS_00008260-exon-sc0000084-1510915933:128827..130763 | Clytia hemisphaerica | exon |
| TCONS_00008260-exon-sc0000084-1575043694:128827..130763 | TCONS_00008260-exon-sc0000084-1575043694:128827..130763 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:128827..130763 + |
Blast
The following BLAST results are available for this feature:
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