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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008248 ID=TCONS_00008248|Name=TCONS_00008248|organism=Clytia hemisphaerica|type=transcript|length=904bp
AAGACTTTAGAATATAAATCAGGTTTGAACAGTCTCATAAGTTTATCAAA
ATgtatagtctagcaagctagacgacttaTTCAGACatgcaaaaagtaat
gaagggaacaattttagtttatacaaactaaatcccgtaacactAATCGT
ATTTTCATATAAcacctatactactgtattacacgcattataaactaCTC
CCTTCTAGAAAATGTATGGCAAAATGTTGGTTTGGATATTACCATTACTG
GGTATTATGATTGTTGCATAGTCCTTTGAAGAAACAGGGATAGTGAAACG
AAAAGTCATTCCACCAGGATTTGGTGGCAAATTGGAAAAAACGGGAAACG
AAGAAtatcaagttttcaaaaaaatttggggtgAAACGTTCGCAAAAGAT
GCATGGAAACAAGCCAGAAATTATCGTAAAAGATATAAGAATTTGTGTGG
ATTCCAAATGTCGTTTGCTAAATACCATTATAATACCTACGCATCATTTG
TCAAAGCAACCGAGGCTAAAATCAAGAAATTGTCATCATATCAAAGAGGA
AAACTGGCAACCTTGGTGAAAGGAATCATAAACTTCagagaaacaaaaca
aaattgctACAACGACAATGATGGTGCACATAATCATGTCTTGAAGTTAT
GGGTCAATCTTTATAATGCAATCAAACCTATTCCTTTATGGCATAAAGTA
GGGAAATAGGGAAAAATCTAAATATAATACCCACATTcttttttcaccgt
tcaacatataTCTATATGGTACTATACATCTATATGATACTATAGATGTA
GTACAtctgtgtttgttttttgtcTTTTAGTTTGTCCTTTTTGgcgtttt
tcagtttttttttgttttctttcataGGTCTTGGTTTgccattttctcat
tttt Run BLAST on NCBI transcript from alignment at sc0000084:12826..14449+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008248 ID=TCONS_00008248|Name=TCONS_00008248|organism=Clytia hemisphaerica|type=transcript|length=1624bp|location=Sequence derived from alignment at sc0000084:12826..14449+ (Clytia hemisphaerica)
AAGACTTTAGAATATAAATCAGGTTTGAACAGTCTCATAAGTTTATCAAA
ATgtatagtctagcaagctagacgacttaTTCAGACatgcaaaaagtaat
gaagggaacaattttagtttatacaaactaaatcccgtaacactAATCGT
ATTTTCATATAAcacctatactactgtattacacgcattataaactaCTC
CCTTCTAGAAAATGTATGGCAAAATGTTGGTTTGGATATTACCATTACTG
GGTATTATGATTGTTGCATAGTCCTTTGAAGAAACAGGGATAGTGAAACG
AAAAGTCATTCCACCAGGTTAaacaaatacacgcttttttctttataaga
atatcttctataagaatatcagggtgaaaattggccaaatcgtaagaata
ccctaagaataccctctagggtgaatttcacagaatttgataagaataca
gtcattttgtatttggtcaacagaaaaaactgcttcctttattagagata
aattgaagctttgaggaagaaatgtaattttaacccgAATATTCACTCAA
Aattccaaaactctcaaattgatcatttctcatgtttgtaaaaaagtcaa
gtctaaaaaagtaagaatacgttaagaatatttcaccctcaataatggca
ctttcttaagaatactcgACCCTCACCcgaagtacactattcttataaaa
aagcgtgcatcTTTTGCAATAGGCTCTCGTTGGGCTTCAATGTGTAtgaa
aaaattggtattttttcattttatttgcgTGAGCATAAAATTCGATTTTT
ATATCCATTTCAAATTTCGCGGGAATGCAAAATATTCCGGACACTTTTTT
AGctttatttatcaattttttccccgatttccACCAAACAAGATTAGATT
TGTGTGAATTTCGAAAGTAATAGGTAAGTTGGCGAATCTTGTGATTGCTA
AGTGAACTTAGGGTCAAAAGCGGAAAAGGAAAATTGGAATCTCGGGCTGT
GTGAGACAATTCCATTCCATTCCATTTCATCTTTAAGGATTTGGTGGCAA
ATTGGAAAAAACGGGAAACGAAGAAtatcaagttttcaaaaaaatttggg
gtgAAACGTTCGCAAAAGATGCATGGAAACAAGCCAGAAATTATCGTAAA
AGATATAAGAATTTGTGTGGATTCCAAATGTCGTTTGCTAAATACCATTA
TAATACCTACGCATCATTTGTCAAAGCAACCGAGGCTAAAATCAAGAAAT
TGTCATCATATCAAAGAGGAAAACTGGCAACCTTGGTGAAAGGAATCATA
AACTTCagagaaacaaaacaaaattgctACAACGACAATGATGGTGCACA
TAATCATGTCTTGAAGTTATGGGTCAATCTTTATAATGCAATCAAACCTA
TTCCTTTATGGCATAAAGTAGGGAAATAGGGAAAAATCTAAATATAATAC
CCACATTcttttttcaccgttcaacatataTCTATATGGTACTATACATC
TATATGATACTATAGATGTAGTACAtctgtgtttgttttttgtcTTTTAG
TTTGTCCTTTTTGgcgtttttcagtttttttttgttttctttcataGGTC
TTGGTTTgccattttctcattttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008248-exon-sc0000084-1491911889:12826..13142 | TCONS_00008248-exon-sc0000084-1491911889:12826..13142 | Clytia hemisphaerica | exon |
| TCONS_00008248-exon-sc0000084-1510915933:12826..13142 | TCONS_00008248-exon-sc0000084-1510915933:12826..13142 | Clytia hemisphaerica | exon |
| TCONS_00008248-exon-sc0000084-1575043694:12826..13142 | TCONS_00008248-exon-sc0000084-1575043694:12826..13142 | Clytia hemisphaerica | exon |
| TCONS_00008248-exon-sc0000084-1491911889:13863..14449 | TCONS_00008248-exon-sc0000084-1491911889:13863..14449 | Clytia hemisphaerica | exon |
| TCONS_00008248-exon-sc0000084-1510915933:13863..14449 | TCONS_00008248-exon-sc0000084-1510915933:13863..14449 | Clytia hemisphaerica | exon |
| TCONS_00008248-exon-sc0000084-1575043694:13863..14449 | TCONS_00008248-exon-sc0000084-1575043694:13863..14449 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:12826..14449 + |
Blast
The following BLAST results are available for this feature:
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