TCONS_00008238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008238
Unique NameTCONS_00008238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008238 ID=TCONS_00008238|Name=TCONS_00008238|organism=Clytia hemisphaerica|type=transcript|length=369bp
aaaatataatTGTTAGCTTTTTGCCAACTAGCGAGATTCATCAGGATTTT
TTACCAGAACCTAATTTCCTCatttttacttttgattttctttgagAAGT
TTCTCATTACTTCATCTTTTTCTGATCCAATAGTCGTTTATGACAAAAAT
CCTTGagattttaggaatgacaaGAACAAAGAGTCACTTCAAAAAGTTTA
TTTCCCTCGACTCTCCAAACTTTTCTGATTGTTGACTAATCGATAAGGTT
GGATATTGTATTGGCCATCATCTTCAGTCAAACATTCACTAATGTCCATA
CCTTAAGTAGATTAAATTTCAGGTGGATTAAGTTTTGTGATTTACacaaa
ttttggcccttttttcaaa
Run BLAST on NCBI

transcript from alignment at sc0000082:529304..529672

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008238 ID=TCONS_00008238|Name=TCONS_00008238|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at sc0000082:529304..529672 (Clytia hemisphaerica)
tttgaaaaaagggccaaaatttgtGTAAATCACAAAACTTAATCCACCTG
AAATTTAATCTACTTAAGGTATGGACATTAGTGAATGTTTGACTGAAGAT
GATGGCCAATACAATATCCAACCTTATCGATTAGTCAACAATCAGAAAAG
TTTGGAGAGTCGAGGGAAATAAACTTTTTGAAGTGACTCTTTGTTCttgt
cattcctaaaatctCAAGGATTTTTGTCATAAACGACTATTGGATCAGAA
AAAGATGAAGTAATGAGAAACTTctcaaagaaaatcaaaagtaaaaatGA
GGAAATTAGGTTCTGGTAAAAAATCCTGATGAATCTCGCTAGTTGGCAAA
AAGCTAACAattatatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004632XLOC_004632Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008238-exon-sc0000082-1491911889:529304..529672TCONS_00008238-exon-sc0000082-1491911889:529304..529672Clytia hemisphaericaexon
TCONS_00008238-exon-sc0000082-1510915933:529304..529672TCONS_00008238-exon-sc0000082-1510915933:529304..529672Clytia hemisphaericaexon
TCONS_00008238-exon-sc0000082-1575043694:529304..529672TCONS_00008238-exon-sc0000082-1575043694:529304..529672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:529304..529672 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.665208	0.432455	1.50636	0.982495	0	0.708877	0	0	0	0.231447	0	0.590699	0.14747	0.612594	0.251818	0	0	0	0	0	0	0	0	0.231139	0	0	0.304044	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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