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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008236 ID=TCONS_00008236|Name=TCONS_00008236|organism=Clytia hemisphaerica|type=transcript|length=2283bp
AAAAAAGTTAGAACTGTCTTCAACTTTTTTAAGATGCAGATGAAATCAAA
GTGGGTAAGGTCAATCAAGATTTTTCTAAATGTTAAAAATCACGTCAATT
CGGCAAAggttttgaatgaaatttcatGGCAGGAAAAGCTATAAAGCATA
GTTATAAAACATAAATATTTGAGTCAGAAAGTAAGAATTGATGGTACGCG
AAAGTCCAATAGTTCGATCTCAATGTCTCTTTCTAAAGCCAGTCAACATA
GAGTCGATATGTCTTTTAAAATAGCCAGGCTGATCAagacttttagaatt
tttgaaggTTTCGTAACGGTTTTCGAACAAACCCAGAGTAGGACCATCTT
GTTTTCGTGAAGTCGTAAACTTTTGAAAAGCTTGTGTTGgagcaaaaagt
ttcaaaaaattcttcTGCTCCTTGGTGCGAGCCGCTTTGAGGAAAGACTT
TTTGTCAATAACCTGAAAGCCATCTTCTGTTGTTGTGTAATGATTCTCAA
AATGACCCATCAACTGTAAATACATTTGAACAAAAATCTCACTGATGAtt
tcattttgtgcttgttttgCATCGACCTGATCCAAAGATAATGAAAAAGT
TTGTTTCAAAGAACCAACAATCTGACTACTGATTTGCtttggtaaaatat
tttcaatatcagCCCTCTCAATCCATGTTCCATCATCAAGATTCAAAATA
GAGACACCTTCCATTGGTAGGTCCTCCAGTTCAGGAATCACAGAGGGTAA
AATTCCCAACAGATATGGTGAGGGTAGACACAAAATATCCATCAATTTGG
TTGGCAACACAGGTATCAAAGTGTGCTCCCATTCAAAAGGATACATCAAG
GAGATAAGAATATGACAGCTTGAAGATAACAAAGTCAATGAATTCGAGCA
TAATACCAGTTTGTTCTCAGTCAACAGTAACGACAACATATCAAGTACAA
TAATGGGATCGAGATTATGAAACAGTGATTGAATTTGAACATGTTCATGG
ATAGCTGAATCCCCTGGTCGAGTTAGAGATACCTTGCGTATCCCACCATC
ACCGccatttgaaaagaaagaaacattTAATGATTCTGTTGGGTTGGGAA
GTTGTTTTGACAAAATTGTTTTGAGAAATGAGAAGACAGCAGTTGAAGAG
AATTGTCGTTGATATTGCACTTCTTCCAATATTTGTGTGTATAATGTGAA
CAACCCATAGGGACTGACAATACAACACACTTCAGGGTGCTTCATTTTGG
GTGTTTGTATCATCCTACAAAAGCCAAAGCTTCTTGCACCTGTTTCACtt
gtcaaaacaaaagaaaaagtctcCCCGTGTTTGTAATTTGAGGATGTGGA
TTGATCTGGAAAACAAAACTGTGGGATACTCTCTAAGAGTGGATTTACTG
CTTGCTCAAACTTTGGTGGAAACTGAAAAGTGATGTATGGTTCCTGCTTC
TCATTTAAAGACACAACAACAACATAATCAAATAATTGAGAGTCAACATC
TAAATGTAGCTCAGAAAAACGGTCATTCTTTGGTGATTCAATGATTTCAA
AGCTGCTTTGATCACTTGCAGGAGATGTTGGGTCATTAAAACTGTGTGAT
TTTTGAACAGGCAAtcttttcttttgtcttttattGCCAAACTTATTGAG
GATGACATCAGAAAACTTTTTTCGTGGTTTCTGTGCCACCTGGCCATCAG
TCTCATCGCCTTCTTCAGGGATGGATTCATCAATCAAAAAGTTCTTGCTG
TTTGAAGATAAAGACAGATCAGGTGCTGATAGACTTTTCAATTTGTTTAA
ATTAGAACTTTCATTGTTATTAGCCACAGTAAACTGTTGTTTATTTTGCT
CAAGTTTTGAGGGAAGGTTTTTACGGGGTAATGGAGGAGTGTGATCTTTC
TTTATTGTAATGTTTGCCGCCTCTTTACTCAAGATCAACCCACTCCTGGG
TCTCATTGGCCTGTTAGGTTTAGATGGCCTTTGAACAACATTGTGCGTTG
AATCTGCTCCCTCGTTCTGaatgttttcactttttggtCGTAGTGGTATT
TCTGGTTTCGCAGGTGTTGTGCTGATACTTGGATGAGAAAATGGTCTTGC
AGAAACATTTCCAGCTTGTTTGTCCACTAAGTTACTTTCTATAGACTTTT
GAACAAGATTAGGTTTTCTTGAGGGTGGTAAAGCAGGTCGCTTTGACGGA
TCAAGTTGTGTTTGTAGTTTTGATGTTGCATGTTTCAAGTTTCCATTTAT
ATTATTTGTTTCCATTAATTAGTtcttctaaaa Run BLAST on NCBI protein sequence of TCONS_00008236-protein >TCONS_00008236-protein ID=TCONS_00008236-protein|Name=TCONS_00008236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=681bp
METNNINGNLKHATSKLQTQLDPSKRPALPPSRKPNLVQKSIESNLVDKQ
AGNVSARPFSHPSISTTPAKPEIPLRPKSENIQNEGADSTHNVVQRPSKP
NRPMRPRSGLILSKEAANITIKKDHTPPLPRKNLPSKLEQNKQQFTVANN
NESSNLNKLKSLSAPDLSLSSNSKNFLIDESIPEEGDETDGQVAQKPRKK
FSDVILNKFGNKRQKKRLPVQKSHSFNDPTSPASDQSSFEIIESPKNDRF
SELHLDVDSQLFDYVVVVSLNEKQEPYITFQFPPKFEQAVNPLLESIPQF
CFPDQSTSSNYKHGETFSFVLTSETGARSFGFCRMIQTPKMKHPEVCCIV
SPYGLFTLYTQILEEVQYQRQFSSTAVFSFLKTILSKQLPNPTESLNVSF
FSNGGDGGIRKVSLTRPGDSAIHEHVQIQSLFHNLDPIIVLDMLSLLLTE
NKLVLCSNSLTLLSSSCHILISLMYPFEWEHTLIPVLPTKLMDILCLPSP
YLLGILPSVIPELEDLPMEGVSILNLDDGTWIERADIENILPKQISSQIV
GSLKQTFSLSLDQVDAKQAQNEIISEIFVQMYLQLMGHFENHYTTTEDGF
QVIDKKSFLKAARTKEQKNFLKLFAPTQAFQKFTTSRKQDGPTLGLFENR
YETFKNSKSLDQPGYFKRHIDSMLTGFRKRH Run BLAST on NCBI transcript from alignment at sc0000082:449571..451853 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008236 ID=TCONS_00008236|Name=TCONS_00008236|organism=Clytia hemisphaerica|type=transcript|length=2283bp|location=Sequence derived from alignment at sc0000082:449571..451853 (Clytia hemisphaerica)
ttttagaagaACTAATTAATGGAAACAAATAATATAAATGGAAACTTGAA
ACATGCAACATCAAAACTACAAACACAACTTGATCCGTCAAAGCGACCTG
CTTTACCACCCTCAAGAAAACCTAATCTTGTTCAAAAGTCTATAGAAAGT
AACTTAGTGGACAAACAAGCTGGAAATGTTTCTGCAAGACCATTTTCTCA
TCCAAGTATCAGCACAACACCTGCGAAACCAGAAATACCACTACGaccaa
aaagtgaaaacattCAGAACGAGGGAGCAGATTCAACGCACAATGTTGTT
CAAAGGCCATCTAAACCTAACAGGCCAATGAGACCCAGGAGTGGGTTGAT
CTTGAGTAAAGAGGCGGCAAACATTACAATAAAGAAAGATCACACTCCTC
CATTACCCCGTAAAAACCTTCCCTCAAAACTTGAGCAAAATAAACAACAG
TTTACTGTGGCTAATAACAATGAAAGTTCTAATTTAAACAAATTGAAAAG
TCTATCAGCACCTGATCTGTCTTTATCTTCAAACAGCAAGAACTTTTTGA
TTGATGAATCCATCCCTGAAGAAGGCGATGAGACTGATGGCCAGGTGGCA
CAGAAACCACGAAAAAAGTTTTCTGATGTCATCCTCAATAAGTTTGGCaa
taaaagacaaaagaaaagaTTGCCTGTTCAAAAATCACACAGTTTTAATG
ACCCAACATCTCCTGCAAGTGATCAAAGCAGCTTTGAAATCATTGAATCA
CCAAAGAATGACCGTTTTTCTGAGCTACATTTAGATGTTGACTCTCAATT
ATTTGATTATGTTGTTGTTGTGTCTTTAAATGAGAAGCAGGAACCATACA
TCACTTTTCAGTTTCCACCAAAGTTTGAGCAAGCAGTAAATCCACTCTTA
GAGAGTATCCCACAGTTTTGTTTTCCAGATCAATCCACATCCTCAAATTA
CAAACACGGGgagactttttcttttgttttgacaaGTGAAACAGGTGCAA
GAAGCTTTGGCTTTTGTAGGATGATACAAACACCCAAAATGAAGCACCCT
GAAGTGTGTTGTATTGTCAGTCCCTATGGGTTGTTCACATTATACACACA
AATATTGGAAGAAGTGCAATATCAACGACAATTCTCTTCAACTGCTGTCT
TCTCATTTCTCAAAACAATTTTGTCAAAACAACTTCCCAACCCAACAGAA
TCATTAaatgtttctttcttttcaaatggCGGTGATGGTGGGATACGCAA
GGTATCTCTAACTCGACCAGGGGATTCAGCTATCCATGAACATGTTCAAA
TTCAATCACTGTTTCATAATCTCGATCCCATTATTGTACTTGATATGTTG
TCGTTACTGTTGACTGAGAACAAACTGGTATTATGCTCGAATTCATTGAC
TTTGTTATCTTCAAGCTGTCATATTCTTATCTCCTTGATGTATCCTTTTG
AATGGGAGCACACTTTGATACCTGTGTTGCCAACCAAATTGATGGATATT
TTGTGTCTACCCTCACCATATCTGTTGGGAATTTTACCCTCTGTGATTCC
TGAACTGGAGGACCTACCAATGGAAGGTGTCTCTATTTTGAATCTTGATG
ATGGAACATGGATTGAGAGGGctgatattgaaaatattttaccaaaGCAA
ATCAGTAGTCAGATTGTTGGTTCTTTGAAACAAACTTTTTCATTATCTTT
GGATCAGGTCGATGcaaaacaagcacaaaatgaaaTCATCAGTGAGATTT
TTGTTCAAATGTATTTACAGTTGATGGGTCATTTTGAGAATCATTACACA
ACAACAGAAGATGGCTTTCAGGTTATTGACAAAAAGTCTTTCCTCAAAGC
GGCTCGCACCAAGGAGCAgaagaattttttgaaactttttgctcCAACAC
AAGCTTTTCAAAAGTTTACGACTTCACGAAAACAAGATGGTCCTACTCTG
GGTTTGTTCGAAAACCGTTACGAAAccttcaaaaattctaaaagtctTGA
TCAGCCTGGCTATTTTAAAAGACATATCGACTCTATGTTGACTGGCTTTA
GAAAGAGACATTGAGATCGAACTATTGGACTTTCGCGTACCATCAATTCT
TACTTTCTGACTCAAATATTTATGTTTTATAACTATGCTTTATAGCTTTT
CCTGCCatgaaatttcattcaaaaccTTTGCCGAATTGACGTGATTTTTA
ACATTTAGAAAAATCTTGATTGACCTTACCCACTTTGATTTCATCTGCAT
CTTAAAAAAGTTGAAGACAGTTCTAACTTTTTT Coding sequence (CDS) from alignment at sc0000082:449571..451853 >TCONS_00008236 ID=TCONS_00008236|Name=TCONS_00008236|organism=Clytia hemisphaerica|type=CDS|length=2046bp|location=Sequence derived from alignment at sc0000082:449571..451853 (Clytia hemisphaerica)
ATGGAAACAAATAATATAAATGGAAACTTGAAACATGCAACATCAAAACT
ACAAACACAACTTGATCCGTCAAAGCGACCTGCTTTACCACCCTCAAGAA
AACCTAATCTTGTTCAAAAGTCTATAGAAAGTAACTTAGTGGACAAACAA
GCTGGAAATGTTTCTGCAAGACCATTTTCTCATCCAAGTATCAGCACAAC
ACCTGCGAAACCAGAAATACCACTACGaccaaaaagtgaaaacattCAGA
ACGAGGGAGCAGATTCAACGCACAATGTTGTTCAAAGGCCATCTAAACCT
AACAGGCCAATGAGACCCAGGAGTGGGTTGATCTTGAGTAAAGAGGCGGC
AAACATTACAATAAAGAAAGATCACACTCCTCCATTACCCCGTAAAAACC
TTCCCTCAAAACTTGAGCAAAATAAACAACAGTTTACTGTGGCTAATAAC
AATGAAAGTTCTAATTTAAACAAATTGAAAAGTCTATCAGCACCTGATCT
GTCTTTATCTTCAAACAGCAAGAACTTTTTGATTGATGAATCCATCCCTG
AAGAAGGCGATGAGACTGATGGCCAGGTGGCACAGAAACCACGAAAAAAG
TTTTCTGATGTCATCCTCAATAAGTTTGGCaataaaagacaaaagaaaag
aTTGCCTGTTCAAAAATCACACAGTTTTAATGACCCAACATCTCCTGCAA
GTGATCAAAGCAGCTTTGAAATCATTGAATCACCAAAGAATGACCGTTTT
TCTGAGCTACATTTAGATGTTGACTCTCAATTATTTGATTATGTTGTTGT
TGTGTCTTTAAATGAGAAGCAGGAACCATACATCACTTTTCAGTTTCCAC
CAAAGTTTGAGCAAGCAGTAAATCCACTCTTAGAGAGTATCCCACAGTTT
TGTTTTCCAGATCAATCCACATCCTCAAATTACAAACACGGGgagacttt
ttcttttgttttgacaaGTGAAACAGGTGCAAGAAGCTTTGGCTTTTGTA
GGATGATACAAACACCCAAAATGAAGCACCCTGAAGTGTGTTGTATTGTC
AGTCCCTATGGGTTGTTCACATTATACACACAAATATTGGAAGAAGTGCA
ATATCAACGACAATTCTCTTCAACTGCTGTCTTCTCATTTCTCAAAACAA
TTTTGTCAAAACAACTTCCCAACCCAACAGAATCATTAaatgtttctttc
ttttcaaatggCGGTGATGGTGGGATACGCAAGGTATCTCTAACTCGACC
AGGGGATTCAGCTATCCATGAACATGTTCAAATTCAATCACTGTTTCATA
ATCTCGATCCCATTATTGTACTTGATATGTTGTCGTTACTGTTGACTGAG
AACAAACTGGTATTATGCTCGAATTCATTGACTTTGTTATCTTCAAGCTG
TCATATTCTTATCTCCTTGATGTATCCTTTTGAATGGGAGCACACTTTGA
TACCTGTGTTGCCAACCAAATTGATGGATATTTTGTGTCTACCCTCACCA
TATCTGTTGGGAATTTTACCCTCTGTGATTCCTGAACTGGAGGACCTACC
AATGGAAGGTGTCTCTATTTTGAATCTTGATGATGGAACATGGATTGAGA
GGGctgatattgaaaatattttaccaaaGCAAATCAGTAGTCAGATTGTT
GGTTCTTTGAAACAAACTTTTTCATTATCTTTGGATCAGGTCGATGcaaa
acaagcacaaaatgaaaTCATCAGTGAGATTTTTGTTCAAATGTATTTAC
AGTTGATGGGTCATTTTGAGAATCATTACACAACAACAGAAGATGGCTTT
CAGGTTATTGACAAAAAGTCTTTCCTCAAAGCGGCTCGCACCAAGGAGCA
gaagaattttttgaaactttttgctcCAACACAAGCTTTTCAAAAGTTTA
CGACTTCACGAAAACAAGATGGTCCTACTCTGGGTTTGTTCGAAAACCGT
TACGAAAccttcaaaaattctaaaagtctTGATCAGCCTGGCTATTTTAA
AAGACATATCGACTCTATGTTGACTGGCTTTAGAAAGAGACATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008236-exon-sc0000082-1491911889:449571..451853 | TCONS_00008236-exon-sc0000082-1491911889:449571..451853 | Clytia hemisphaerica | exon |
| TCONS_00008236-exon-sc0000082-1510915933:449571..451853 | TCONS_00008236-exon-sc0000082-1510915933:449571..451853 | Clytia hemisphaerica | exon |
| TCONS_00008236-exon-sc0000082-1575043694:449571..451853 | TCONS_00008236-exon-sc0000082-1575043694:449571..451853 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000082 | supercontig | sc0000082:449571..451853 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00008236 vs. Swiss-Prot (Human)
Match: DEN2C (DENN domain-containing protein 2C OS=Homo sapiens GN=DENND2C PE=1 SV=2) HSP 1 Score: 237.269 bits (604), Expect = 4.630e-66 Identity = 174/530 (32.83%), Postives = 289/530 (54.53%), Query Frame = -1
Query: 247 GQVAQKPRKKFSDVIL---NKFGNKRQKKRLPVQKSHSFNDPTSP------ASDQSSFEIIESPKNDRFSELH-----------LDVD------SQLFDYVVVVSLNEKQE-----PYITFQFPPK----FEQA--VNPLLESIPQFCFPDQST---SSNYKHGETFSFVLTSETGARSFGFCR-MIQTPKMKH-PEVCCIVSPYGLFTLYTQILEEVQYQRQFSSTAVFSFLKTILSKQLPNPTESLNV-SFFSNGGDGGIRKVSLTRPGDSAIHEHVQIQSLFHNLDPIIVLDMLSLLLTENKXXXXXXXXXXXXXXXXXXXXLMYPFEWEHTLIPVLPTKLMDILCLPSPYLLGILPSVIPELEDLPMEGVSILNLDDGTWI-ERADIENILPKQISSQIVGSLKQTFSLSLDQVDAKQ--AQNEIISEIFVQMYLQLMGHFENHYTTTEDGFQVIDKKSFLKAARTKEQKNFLKLFAPTQAFQKFTTSRK-QDGPTLGLFENRYETFKNSKSLDQPGYFKRHIDSM 1695
G+VA RK ++L + F +KR KK++ K HS+ P + ++S E + ++ R ++L L+ D QLF+ VVVSL +K P + QFP K ++Q+ + L+ IP+FCFPD +S K ETFSFVLT E G+R FG+C+ ++ K K PEV C+VS G F L+++IL+EV+ +R+ S V+ F+++++ P P ++ V S+ GD I L RP DS + EHV + LF L ++ + + LL E +++ +NSL+ LS H +++ +YPF W+HT IPVLP ++DI+C P+P+L+GIL +P+L+DLP+E V I++L ++ E +D + ILP ++ + ++ L++ + + + Q N ++SE FV+ +++L+GH+ + T TE G +V ++ F K+ ++ ++FL LF TQ F F R+ + GLFE R + + +P R + S+
Sbjct: 397 GEVANTKRKNLPRLVLKIDDIFESKRGKKKV---KLHSYTGKELPPTKGETSGNESDAEYLPKNRHKRLAQLQPSSKRNPHYQTLERDLIELQEQQLFELFVVVSLQKKPSGISYIPQVIQQFPGKDDHGYKQSKDMEERLKVIPKFCFPDSKDWMPTSELK-SETFSFVLTGEDGSRWFGYCKKLLPVGKGKRLPEVYCMVSRLGCFNLFSKILDEVEKRREMSPALVYPFMRSVMEAPFPAPGRTITVKSYLPGAGDESI---ELCRPLDSRL-EHVDFKCLFKCLSVCHLIRVCASLLLERRVIFVANSLSTLSKCGHAVVATLYPFTWQHTYIPVLPASMIDIVCSPTPFLIGILSCSLPQLQDLPIEEVLIVDLCADKFLQEVSDEDEILPPKLQAALMQILEERNEILTQEQNFSQDVTLNSLVSEAFVRFFVELVGHYSLNMTVTERGERVFQREPFRKSHTSRSVRHFLDLFMETQMFAGFIQDRELRKSGVKGLFEIRAIQYLETIPESEPSGMNRILRSL 918
The following BLAST results are available for this feature:
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