TCONS_00008232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008232
Unique NameTCONS_00008232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008232 ID=TCONS_00008232|Name=TCONS_00008232|organism=Clytia hemisphaerica|type=transcript|length=393bp
cTATCTTTGACTGCGCGAAAATACGCTTCTCCTCTAACTCTGAACCATAG
TAACTCCCAACAGTACCCTTAAACTCCCTTACccacaaaaagaaaagaca
caGTTGTTTTCTTTAAATGTTGGTGTTCGGGTTCTTTTGTCAGCACTGAG
AATACAAAGAGCAAAGGTGTGAACAGTTATCATGATAATAAGTCTAAATT
ACCAAATCACAGCCTCTGTACTACCCTGTCACTACTGGTACAGAAAAATT
AAGATTATGACCTGCACTACCCATTTACATCTGGTACAAGCACCAAAAAA
TATTGGCCCATGCACTACCCAGCCACCACTGGTGCATGCCAGGCACTAAA
TAAGAAAACCTGTACTACCTAGTCACTACTGGTAcaggaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000082:426873..427265

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008232 ID=TCONS_00008232|Name=TCONS_00008232|organism=Clytia hemisphaerica|type=transcript|length=393bp|location=Sequence derived from alignment at sc0000082:426873..427265 (Clytia hemisphaerica)
tttttcctgTACCAGTAGTGACTAGGTAGTACAGGTTTTCTTATTTAGTG
CCTGGCATGCACCAGTGGTGGCTGGGTAGTGCATGGGCCAATATTTTTTG
GTGCTTGTACCAGATGTAAATGGGTAGTGCAGGTCATAATCTTAATTTTT
CTGTACCAGTAGTGACAGGGTAGTACAGAGGCTGTGATTTGGTAATTTAG
ACTTATTATCATGATAACTGTTCACACCTTTGCTCTTTGTATTCTCAGTG
CTGACAAAAGAACCCGAACACCAACATTTAAAGAAAACAACtgtgtcttt
tctttttgtggGTAAGGGAGTTTAAGGGTACTGTTGGGAGTTACTATGGT
TCAGAGTTAGAGGAGAAGCGTATTTTCGCGCAGTCAAAGATAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004626XLOC_004626Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008232-exon-sc0000082-1491911889:426873..427265TCONS_00008232-exon-sc0000082-1491911889:426873..427265Clytia hemisphaericaexon
TCONS_00008232-exon-sc0000082-1510915933:426873..427265TCONS_00008232-exon-sc0000082-1510915933:426873..427265Clytia hemisphaericaexon
TCONS_00008232-exon-sc0000082-1575043694:426873..427265TCONS_00008232-exon-sc0000082-1575043694:426873..427265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:426873..427265 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.50658	1.17652	1.30988	1.29515	1.83762	2.37174	5.36655	7.95237	4.61795	5.05114	3.04128	4.53433	1.55419	0.799036	0	0.587477	0	0.148359	0.614896	0.214481	1.11854	1.09117	0.221077	0.401981	0.809293	2.40183	0.935534	0.28216	0.642025	0.654122
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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