TCONS_00008228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008228
Unique NameTCONS_00008228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008228 ID=TCONS_00008228|Name=TCONS_00008228|organism=Clytia hemisphaerica|type=transcript|length=524bp
TCTAATGTAATTAGTTTTGATTGAGCCACTAATGAGCAGATTTCCGATCC
CATTTTACGAAGCTTTCCGCACCACGTACTTTCAAAACAAGGATTTGCTG
AAGTAACAAAACTCTTCCTCATCCCATAAAAAGCTTCCCTTGGCAAATTC
TGAGTAATTGTAATGCACAGATGTGAAGAGATGAGCTGATATTCTCAAAA
TAGTAATTTACACTCAGTTGTTGTCTTATAAGCCAAATCTGCTGCATTTA
ATGCAAAGCTGTCTGTAGATCGGTATTGGTGACTCATATCACTTCATGCT
TCCAAAACTACGGCGTGAAGATACTCGAGAAAATCCACAACTgctaaaca
cccctgtgtcatcaGTGAcctagtctgaatcacagacttctacaaaaccc
caggtagtatatctataaggagcacgaacccgttagtggatgccagcagt
cTATCAGTGACCTGGTAATGCGAGATTCTAACAGTCCACAGTGAATCTGA
TTGGGTCCCATGGAagagaaatta
Run BLAST on NCBI

transcript from alignment at sc0000082:361054..361577

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008228 ID=TCONS_00008228|Name=TCONS_00008228|organism=Clytia hemisphaerica|type=transcript|length=524bp|location=Sequence derived from alignment at sc0000082:361054..361577 (Clytia hemisphaerica)
taatttctctTCCATGGGACCCAATCAGATTCACTGTGGACTGTTAGAAT
CTCGCATTACCAGGTCACTGATAgactgctggcatccactaacgggttcg
tgctccttatagatatactacctggggttttgtagaagtctgtgattcag
actaggTCACtgatgacacaggggtgtttagcAGTTGTGGATTTTCTCGA
GTATCTTCACGCCGTAGTTTTGGAAGCATGAAGTGATATGAGTCACCAAT
ACCGATCTACAGACAGCTTTGCATTAAATGCAGCAGATTTGGCTTATAAG
ACAACAACTGAGTGTAAATTACTATTTTGAGAATATCAGCTCATCTCTTC
ACATCTGTGCATTACAATTACTCAGAATTTGCCAAGGGAAGCTTTTTATG
GGATGAGGAAGAGTTTTGTTACTTCAGCAAATCCTTGTTTTGAAAGTACG
TGGTGCGGAAAGCTTCGTAAAATGGGATCGGAAATCTGCTCATTAGTGGC
TCAATCAAAACTAATTACATTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004622XLOC_004622Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008228-exon-sc0000082-1491911889:361054..361577TCONS_00008228-exon-sc0000082-1491911889:361054..361577Clytia hemisphaericaexon
TCONS_00008228-exon-sc0000082-1510915933:361054..361577TCONS_00008228-exon-sc0000082-1510915933:361054..361577Clytia hemisphaericaexon
TCONS_00008228-exon-sc0000082-1575043694:361054..361577TCONS_00008228-exon-sc0000082-1575043694:361054..361577Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:361054..361577 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.127523	0.124761	0.30377	0.240043	0.144801	0.135561	0.379637	0.705363	0.114107	0.375047	0.224716	0	0.127908	0.205897	0.253648	0.346641	0.239452	0.125284	0.43558	0.318691	0.129137	0	1.08831	0.755449	0	0	0.250016	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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