TCONS_00008225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008225
Unique NameTCONS_00008225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008225 ID=TCONS_00008225|Name=TCONS_00008225|organism=Clytia hemisphaerica|type=transcript|length=717bp
ATAAATGGAGATTTGAACAGATCCTATCGTATTGGCAACGATTTTACGAA
TGAAAAAGACGTGATTAGAGATAAATTCAAAAATGCAGGTTTTCCTCCAC
GTTTCACTGAAAGTGtgattaaatattttgaaactaAATTGAATGATGAT
CGTCTGATACCCGAATTTCTGtttgaagagaaaaagaaatttgtccttAT
TGAGCTTCCTTTCTGTGAAAGTAATGAATTATTATTTAAACGATTTATAT
acaaattaaaatcttttaccaatgataaGATTGATTTCGCAGTTAAATGG
TCTACAAAGAAAGTGAAGCAATTATTTAGTCCTAAGGACAAAAACCCACA
CCCAGCATGTAAGATTTATGAAGGTGTATGCTCGTGTGGTATGAATTACA
TTGGTGAAACAAACCGCAATGTGGAAACTAGATGGTCAGAGCATAACAAT
ATTGAACATAACTCTGAACCAGCCAAACACCTGTTAAATCACCCTGATCA
TGAATTCCAATGGAAAGTAATATTAAATGCACCTGGAAACACACGATTAC
GCAAAAACTTAGAGGCTGCTCTCATTGCCCTCAAGAGACCCAttcttaat
gaccaattagatTCAAAACGGCTAATTTTATTTCGCAATGGTGTAACATA
GATATTTTTAACGACTTTCTTTTATTAACTTTTTAACagcttttaattgt
ttttagactgataaatt
Run BLAST on NCBI

protein sequence of TCONS_00008225-protein

>TCONS_00008225-protein ID=TCONS_00008225-protein|Name=TCONS_00008225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
INGDLNRSYRIGNDFTNEKDVIRDKFKNAGFPPRFTESVIKYFETKLNDD
RLIPEFLFEEKKKFVLIELPFCESNELLFKRFIYKLKSFTNDKIDFAVKW
STKKVKQLFSPKDKNPHPACKIYEGVCSCGMNYIGETNRNVETRWSEHNN
IEHNSEPAKHLLNHPDHEFQWKVILNAPGNTRLRKNLEAALIALKRPILN
DQLDSKRLILFRNGVT
Run BLAST on NCBI

transcript from alignment at sc0000082:240166..240882

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008225 ID=TCONS_00008225|Name=TCONS_00008225|organism=Clytia hemisphaerica|type=transcript|length=717bp|location=Sequence derived from alignment at sc0000082:240166..240882 (Clytia hemisphaerica)
aatttatcagtctaaaaacaattaaaagctGTTAAAAAGTTAATAAAAGA
AAGTCGTTAAAAATATCTATGTTACACCATTGCGAAATAAAATTAGCCGT
TTTGAatctaattggtcattaagaaTGGGTCTCTTGAGGGCAATGAGAGC
AGCCTCTAAGTTTTTGCGTAATCGTGTGTTTCCAGGTGCATTTAATATTA
CTTTCCATTGGAATTCATGATCAGGGTGATTTAACAGGTGTTTGGCTGGT
TCAGAGTTATGTTCAATATTGTTATGCTCTGACCATCTAGTTTCCACATT
GCGGTTTGTTTCACCAATGTAATTCATACCACACGAGCATACACCTTCAT
AAATCTTACATGCTGGGTGTGGGTTTTTGTCCTTAGGACTAAATAATTGC
TTCACTTTCTTTGTAGACCATTTAACTGCGAAATCAATCttatcattggt
aaaagattttaatttgtATATAAATCGTTTAAATAATAATTCATTACTTT
CACAGAAAGGAAGCTCAATaaggacaaatttctttttctcttcaaaCAGA
AATTCGGGTATCAGACGATCATCATTCAATTtagtttcaaaatatttaat
caCACTTTCAGTGAAACGTGGAGGAAAACCTGCATTTTTGAATTTATCTC
TAATCACGTCTTTTTCATTCGTAAAATCGTTGCCAATACGATAGGATCTG
TTCAAATCTCCATTTAT

Coding sequence (CDS) from alignment at sc0000082:240166..240882

>TCONS_00008225 ID=TCONS_00008225|Name=TCONS_00008225|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at sc0000082:240166..240882 (Clytia hemisphaerica)
CTATGTTACACCATTGCGAAATAAAATTAGCCGTTTTGAatctaattggt
cattaagaaTGGGTCTCTTGAGGGCAATGAGAGCAGCCTCTAAGTTTTTG
CGTAATCGTGTGTTTCCAGGTGCATTTAATATTACTTTCCATTGGAATTC
ATGATCAGGGTGATTTAACAGGTGTTTGGCTGGTTCAGAGTTATGTTCAA
TATTGTTATGCTCTGACCATCTAGTTTCCACATTGCGGTTTGTTTCACCA
ATGTAATTCATACCACACGAGCATACACCTTCATAAATCTTACATGCTGG
GTGTGGGTTTTTGTCCTTAGGACTAAATAATTGCTTCACTTTCTTTGTAG
ACCATTTAACTGCGAAATCAATCttatcattggtaaaagattttaatttg
tATATAAATCGTTTAAATAATAATTCATTACTTTCACAGAAAGGAAGCTC
AATaaggacaaatttctttttctcttcaaaCAGAAATTCGGGTATCAGAC
GATCATCATTCAATTtagtttcaaaatatttaatcaCACTTTCAGTGAAA
CGTGGAGGAAAACCTGCATTTTTGAATTTATCTCTAATCACGTCTTTTTC
ATTCGTAAAATCGTTGCCAATACGATAGGATCTGTTCAAATCTCCATTTA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004619XLOC_004619Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008225-exon-sc0000082-1491911889:240166..240882TCONS_00008225-exon-sc0000082-1491911889:240166..240882Clytia hemisphaericaexon
TCONS_00008225-exon-sc0000082-1510915933:240166..240882TCONS_00008225-exon-sc0000082-1510915933:240166..240882Clytia hemisphaericaexon
TCONS_00008225-exon-sc0000082-1575043694:240166..240882TCONS_00008225-exon-sc0000082-1575043694:240166..240882Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008225-proteinTCONS_00008225-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:240166..240882 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11741	0.408619	0.711668	0.618894	1.03599	0.520959	0.628515	1.59711	0.529661	0.291587	0.495287	0.465118	0.32513	0.434122	0.475876	0.340459	0.629126	0.483626	0.519676	0.543803	1.35047	0.494033	0.560525	0.655198	0.224946	0.669197	1.34067	0.919797	0.0775148	0.157951
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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