TCONS_00008223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008223
Unique NameTCONS_00008223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008223 ID=TCONS_00008223|Name=TCONS_00008223|organism=Clytia hemisphaerica|type=transcript|length=438bp
TTTCCAAGCAGTGATTAAGAGTTCCCCAACTGGTCACGATGGTGGTGTGG
TGACATTCTGCAATggtgttatttttatttcttctattgtatcatattta
ttttaaaaactgtaaatatttaattttaaagattttaaaagtgaCATTGG
ATCTGATTTGCAAATTTATCATTATGCTTAAACGAGTAATATCTAATTGG
AATTCAACTCTATTATATCTTTCGTAAATTGAAATTACTGgctattttca
gtttttgaactGAGCCCTTCAGAAGCGAGTGGATCGGTTTTTTGCAACTC
AAAGCTCAACCCCTCGGAGAGATTTTTGAGATGTGGGAAAGGAGAGGaaa
caacctcgttccctgcgtattatcagctttttgatgctttactgatagcg
ctagattattattattattattattattattaatttat
Run BLAST on NCBI

transcript from alignment at sc0000082:202721..203158

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008223 ID=TCONS_00008223|Name=TCONS_00008223|organism=Clytia hemisphaerica|type=transcript|length=438bp|location=Sequence derived from alignment at sc0000082:202721..203158 (Clytia hemisphaerica)
ataaattaataataataataataataataataatctagcgctatcagtaa
agcatcaaaaagctgataatacgcagggaacgaggttgtttCCTCTCCTT
TCCCACATCTCAAAAATCTCTCCGAGGGGTTGAGCTTTGAGTTGCAAAAA
ACCGATCCACTCGCTTCTGAAGGGCTCagttcaaaaactgaaaatagcCA
GTAATTTCAATTTACGAAAGATATAATAGAGTTGAATTCCAATTAGATAT
TACTCGTTTAAGCATAATGATAAATTTGCAAATCAGATCCAATGtcactt
ttaaaatctttaaaattaaatatttacagtttttaaaataaatatgatac
aatagaagaaataaaaataacaccATTGCAGAATGTCACCACACCACCAT
CGTGACCAGTTGGGGAACTCTTAATCACTGCTTGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004617XLOC_004617Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008223-exon-sc0000082-1491911889:202721..203158TCONS_00008223-exon-sc0000082-1491911889:202721..203158Clytia hemisphaericaexon
TCONS_00008223-exon-sc0000082-1510915933:202721..203158TCONS_00008223-exon-sc0000082-1510915933:202721..203158Clytia hemisphaericaexon
TCONS_00008223-exon-sc0000082-1575043694:202721..203158TCONS_00008223-exon-sc0000082-1575043694:202721..203158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:202721..203158 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.464774	1.20889	0.701878	0.171615	1.46247	0.33019	0.9959	1.12019	2.34994	1.94052	2.51135	1.9609	0.618437	2.35812	0	0.377627	0.465205	0.596026	0.658753	1.20634	0.600276	1.31512	0.888422	0.807473	1.16692	0.300902	0	0.453427	0.860222	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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