TCONS_00008221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008221
Unique NameTCONS_00008221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008221 ID=TCONS_00008221|Name=TCONS_00008221|organism=Clytia hemisphaerica|type=transcript|length=346bp
TTATATTCATGCCGAAACATCAAAGTCCAAATCCAACGAGAACAACTTTT
CTGGTGGAAAACAGTCAAATTCTGGCCTGAAGATACCAGCAGTCTATTTT
ATGGGGTAGGAAAATCTAAACGAAGTCTCTCATACCGAGGATGTGGTGTA
GCTAGGAAGTCAGTCACTTATTCATCTCGCGTTTATGACACGAAGAAGGA
TGCACCAATCACCGATAAGTATTGGCTTTATGAAGCATGCTCGGCTAGCG
AAGGAGAAATGCACTCTCTCAACAGAGCAATGTCAGCTTGGGTTTCGCAA
ATCAAACAGTGCAAAGTTGGTTATAAACCAGCTTCGCTGTTGAAGA
Run BLAST on NCBI

protein sequence of TCONS_00008221-protein

>TCONS_00008221-protein ID=TCONS_00008221-protein|Name=TCONS_00008221-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
LYSCRNIKVQIQREQLFWWKTVKFWPEDTSSLFYGVGKSKRSLSYRGCGV
ARKSVTYSSRVYDTKKDAPITDKYWLYEACSASEGEMHSLNRAMSAWVSQ
IKQCKVGYKPASLLK
Run BLAST on NCBI

transcript from alignment at sc0000082:108143..108488

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008221 ID=TCONS_00008221|Name=TCONS_00008221|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at sc0000082:108143..108488 (Clytia hemisphaerica)
TCTTCAACAGCGAAGCTGGTTTATAACCAACTTTGCACTGTTTGATTTGC
GAAACCCAAGCTGACATTGCTCTGTTGAGAGAGTGCATTTCTCCTTCGCT
AGCCGAGCATGCTTCATAAAGCCAATACTTATCGGTGATTGGTGCATCCT
TCTTCGTGTCATAAACGCGAGATGAATAAGTGACTGACTTCCTAGCTACA
CCACATCCTCGGTATGAGAGACTTCGTTTAGATTTTCCTACCCCATAAAA
TAGACTGCTGGTATCTTCAGGCCAGAATTTGACTGTTTTCCACCAGAAAA
GTTGTTCTCGTTGGATTTGGACTTTGATGTTTCGGCATGAATATAA

Coding sequence (CDS) from alignment at sc0000082:108143..108488

>TCONS_00008221 ID=TCONS_00008221|Name=TCONS_00008221|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000082:108143..108488 (Clytia hemisphaerica)
CTTCAACAGCGAAGCTGGTTTATAACCAACTTTGCACTGTTTGATTTGCG
AAACCCAAGCTGACATTGCTCTGTTGAGAGAGTGCATTTCTCCTTCGCTA
GCCGAGCATGCTTCATAAAGCCAATACTTATCGGTGATTGGTGCATCCTT
CTTCGTGTCATAAACGCGAGATGAATAAGTGACTGACTTCCTAGCTACAC
CACATCCTCGGTATGAGAGACTTCGTTTAGATTTTCCTACCCCATAAAAT
AGACTGCTGGTATCTTCAGGCCAGAATTTGACTGTTTTCCACCAGAAAAG
TTGTTCTCGTTGGATTTGGACTTTGATGTTTCGGCATGAATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004615XLOC_004615Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008221-exon-sc0000082-1491911889:108143..108488TCONS_00008221-exon-sc0000082-1491911889:108143..108488Clytia hemisphaericaexon
TCONS_00008221-exon-sc0000082-1510915933:108143..108488TCONS_00008221-exon-sc0000082-1510915933:108143..108488Clytia hemisphaericaexon
TCONS_00008221-exon-sc0000082-1575043694:108143..108488TCONS_00008221-exon-sc0000082-1575043694:108143..108488Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008221-proteinTCONS_00008221-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:108143..108488 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.258961	0.252528	1.17284	0.860577	0.349223	0	0	0	0.218221	0	0	0	12.5726	9.12182	19.8513	44.5006	1.74961	0.597764	70.1967	53.0034	2.75416	3.29739	7.12607	10.2578	19.4624	21.5881	0.710174	0	0.287426	1.17137
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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