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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008210 ID=TCONS_00008210|Name=TCONS_00008210|organism=Clytia hemisphaerica|type=transcript|length=3252bp
CCAGTGCAAAGTAAAAACAATGACAATCaattaaaatcaacaaaataaac
CTGGCATCTTATCTGTCATGATCAACACTAACGTCACAGATGATGGATTT
GAAATTTGTACACCAGATAGCAACCTGCTTGCTGTCCCGATTGGAATTGA
ACACGTGACCTGCTCATTTCCGAATTGTGGTCGTGTGGTAAAAAGCACAT
CAGCCCTACGTCTTCATATGTTGAAAAGTCATGGTGTTGGAAAAGTCACT
GATAAatcagtcaaaaagaagaaatatgCGTGTCCAGTTGTGGGTTGTTT
GAGGCATGCTATGTCACAGAAGAAAAGTTACTTTAACTCAATGTATTTAT
TGAAAAGGCATTATCTTCTTTGCCATGGTGAAAAGAACTTTCCATGTGAG
AGATGTGGAAGAAAGTTTGGAACTGAGATGTCATCCATACAACATTATCA
TCAATGTCGTAAATTGTTCTACTGCTCCTGTGGTCTCAATTACTCGAACA
AACATTTGTTGAAATCTCACCTGTTGAAGAATGACCGTCAGCAACATCAT
GCTGTACCTGACCCTGATGAAGAAAtggaaaaagagaaagaaaaacatca
aaGAGAAAAAGCAACAGCAGCACAAAATCAAATGGTTAGCCTTCCTTGTT
TTCTGTACATTCCAAAAGATAACACAAATGagcttcaacaacaacaacaa
caacaaccctCTCTGACAACCAACTCTCAATTGATTCAATATCCTGATAA
TGCAACCCTTCAACAAAATCAAGAACGATTCATTCGAATTTTACCCAAGA
AACAACAAAGAGCACATCAAGAACCATTCCAGTTTATAAATCCAACACAA
ATAGCAGGGTATTGTACATCTATGAATCCTTTCCAATCTTTACCCCATAT
TTTCAATGTGATGAACTCAAGCCAACTANAAGTTACTTTAACTCAATGTA
TTTATTGAAAAGGCATTATCTTCTTTGCCATGGTGAAAAGAACTTTCCAT
GTGAGAGATGTGGAAGAAAGTTTGGAACTGAGATGTCATCCATACAACAT
TATCATCAATGTCGTAAATTGTTCTACTGCTCCTGTGGTCTCAATTACTC
GAACAAACATTTGTTGAAATCTCACCTGTTGAAGAATGACCGTCAGCAAC
ATCATGCTGTACCTGACCCTGATGAAGAAATGGAAAAAGAGAAAGAAAAA
CATCAAAGAGAAAAAGCAACAGCAGCACAAAATCAAATGGTTAGCCTTCC
TTGTTTTCTGTACATTCCAAAAGATAACACAAATGAGCTTCAACAACAAC
AACAACAACAACCCTCTCTGACAACCAACTCTCAATTGATTCAATATCCT
GATAATGCAACCCTTCAACAAAATCAAGAACGATTCATTCGAATTTTACC
CAAGAAACAACAAAGAGCACATCAAGAACCATTCCAGTTTATAAATCCAA
CACAAATAGCAGGGTATTGTACATCTATGAATCCTTTCCAATCTTTACCC
CATATTTTCAATGTGATGAACTCAAGCCAACTACAACCAGAGACTAGTCA
ACAATGTAAACAGCGCCAAATACTACCCTCCAGTGCTCCAGTGCAAACAT
TACCAACCCAAACTCAACAAGATCCAATGTTACAAACTTCCTCATCTCTT
GATTGTGAAAAGTCAACTGAAAAACCAATTCATAAAGCCAAAGTGAAAAA
ACCGAAAgttaaaaaaccaaaaaaatccGAACCTAAgaagcaaaaagcaa
aaaaggtgaaaataaaagaatcaaGATTCGAGAAGCATATGAAATTTATC
ACTTCAAAGGAAACACAGGAGATTCTAGCCGATGATGAACTTATTCAATC
CACTTTATCCAGCCTGCAGAATGCAAAATGCAATTGTGCGTTATTCAAAG
CAGGTAAGGTTTGCCGTCATTTCTCTCCCAAGAAAGCAGCCTTCATTCAA
AAGTCGAACAGACCTGCCAGTGAAAATTTGATCACAAACTTCACACAGAC
AATGAGCACACAGGCTCAAGCCACTGAACAGGTGCACACTGGCATCCAGA
CTAACAACGACACGCAGTTCCCCATGGTGGAAGTCATGGAAACGTCCGAT
TTCAGTATTCAATGTCGACTATCGAATACAGGTGTCACTTCACAAGACGC
ATCAACTCAAGACACAAGTAGTATGCTTCCCATCCCTATCATTGATAACC
AGACACAAACAGACGATTTAGTGACCCTACTCGACAGCTTACAAACCAAT
GCGCATCTCGCTGATATGGAAACCCAAACATATTCTGCGGAAAACGACAA
GTCTACCTTACTGGATGATATTCTGAGCGGAAAGACGTGGGATAACGAGG
CCAGTATTTATGTGAGGGAGACACACAATGAGAATAATCACATCCCTTCA
TTATTCATGACTGAAGGAGACACGGAATGCAAACAAAACAATTCCACTCA
AACTTTGGATGCGGCGTGTGGCGTTGCATTTGATGTGCACCAAAACACGA
CGATCAGTGACAAAGACATTGTGTTACCTTCACAGAACAATCATTTCATT
GAACCTTTAAACATGAGTTTTGGTACACAGACAGTCTTTGATGACGACAG
CCTTTCTCAAGAAACATTCAGCTTTGGGACACAAACAGGAGGATTTGAGA
GCAATATGTTCAGCAGTTCAGCAACACAGACTTGGGATGTGAGCGAGACT
TCAATAAATGCCAAAACCACAATAGAAACACAAACGGCAATTTCGTTTGC
TGATCTTTTGGATTCTTCGTTCATTGATGAATATCTGAGCACTGAGCAAA
GCACCTCAACTGAAACCCAAACTCCATTTGATCAAAACAGAGAGGTGGTC
ACCGCTGAAACTCAAACCCTGTGAAtgatatcttttcaacgaaatttttc
gctgtttatacttttttgtctttttgtctATCAAGCTTTTGTTTTTGCTA
TTTCTTCAGAGATGATTTTTTATATCAATCTTTGCTTATAATAACCTTAT
ACTTTTAATCGTTCcataagaaaaattattttttgcttcgTTTTTCTAAG
ATTTCGTTTTATTAGCACGTTATAGTACTTTGTTATAATATGTTTATTCc
tatgaaacttttttttcgtttttttgaaaaagtcgtTTGATgtacaaatt
tattttattatacATTGTTTATAATTTCTCTTTATGATAGATTTTTATAA
AATgccaacaaaaaagaaaacgttAATTTATACCTAGAGTTTATGTTCGA
CT Run BLAST on NCBI transcript from alignment at sc0000082:650946..655479- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008210 ID=TCONS_00008210|Name=TCONS_00008210|organism=Clytia hemisphaerica|type=transcript|length=4534bp|location=Sequence derived from alignment at sc0000082:650946..655479- (Clytia hemisphaerica)
CCAGTGCAAAGTAAAAACAATGACAATCAATTAAAATCAACAAAATAAAC
CTGGCATCTTATCTGTCATGATCAACACTAACGTCACAGATGATGGATTT
GAAATTTGTACACCAGATAGCAACCTGCTTGCTGTCCCGATTGGAATTGA
ACACGTGACCTGCTCATTTCCGAATTGTGGTCGTGTGGTAAAAAGCACAT
CAGCCCTACGTCTTCATATGTTGAAAAGTCATGGTGTTGGAAAAGTCACT
GATAAATCAGTCAAAAAGAAGAAATATGCGTGTCCAGTTGTGGGTTGTTT
GAGGCATGCTATGTCACAGAAGAAAAGTTACTTTAACTCAATGTATTTAT
TGAAAAGGGTTGGTTATGTTTTCTATACCTACAAAATTTAAATTTCAAAA
TTTAATGCAGCCTTAACTGGACATCTGTTTTGCTTAGTCACTCAGTCAAC
GTTTTATACCAAGGTATTAGTGGAGATCATTTTGAGAGATTTTCTCTCTT
TTGCTTGAGTTTTGACGATTTTTCAACAAAAACTAAAAATATTCCAGTTT
TTCGATAGGGAAGTTCCTGAGTGAACTAACATTGAGAAAACTTGAGGGAA
AAAATGGGGAAAAAGTTTAATGCTTTTCCACATTTCTAAATTAGTCAAAT
TTTTCAAAAAGTCCAGTTGCACAGAAGGATGGTTAATCTTGTTTACTTGG
AAACAATTTTAAGACATCTGTTTAACAATTGAACACGTCTACGTAGTAAG
TTTTGAAAAATTTTGCAATATTATATTATAGTTTTATCGTTTTTAGCATT
ATCTTCTTTGCCATGGTGAAAAGAACTTTCCATGTGAGAGATGTGGAAGA
AAGTTTGGAACTGAGATGTCATCCATACAACATTATCATCAATGTCGTAA
ATTGTTCTACTGCTCCTGTGGTCTCAATTACTCGAACAAACATTTGTTGA
AATCTCACCTGTTGAAGAATGACCGTCAGCAACATCATGCTGTACCTGAC
CCTGATGAAGAAATGGAAAAAGAGAAAGAAAAACATCAAAGAGAAAAGTA
TTCTATTCATTGTGTTAATTCTTTAATCTTCGGTTTTGAAATTTACTTAA
TTTGCATTGAAATGTTGAAATTTAGGATATTGGCTGCGGGGAATCTCTGT
GTGTATAGATTACTCTGCTAATATGCTAGAGGAACATCTCTTTTTTAAAG
GCTTTTTACATATACCGCAACTTTTCTATTCGACTTTATTTTTCATAGAG
CAACAGCAGCACAAAATCAAATGGTTAGCCTTCCTTGTTTTCTGTACATT
CCAAAAGATAACACAAATGAGCTTCAACAACAACAACAACAACAACCCTC
TCTGACAACCAACTCTCAATTGATTCAATATCCTGATAATGCAACCCTTC
AACAAAATCAAGAACGATTCATTCGAATTTTACCCAAGAAACAACAAAGA
GCACATCAAGAACCATTCCAGTTTATAAATCCAACACAAATAGCAGGGTA
TTGTACATCTATGAATCCTTTCCAATCTTTACCCCATATTTTCAATGTGA
TGAACTCAAGCCAACTANAAGTTACTTTAACTCAATGTATTTATTGAAAA
GGGTTGGTTATGTTTTCTATACCTACAAAATTTAAATTTCAAAATTTAAT
GCAGCCTTAAACTGGACATCTGTTTTGCTTAGTCACTCAGTCAACGTTTT
ATACCAAGGTATTAGTGGAAATCATTTTGAGAGATTTTCTCTCTTTTGCT
TGAGTTTTGACGATTTTTCAACAAAAACTAAAAATATTCCAGTTTTTCGA
TATGGAAGTTCCTGAGTGAACTAACATTGAGAAAACTTGAGGGAAAAAAA
TGGGGAAAAAGTTTAATGCTTTTCCACATTTCTAATTAGTCAAATTTTTC
AAATAAAAAGTCCAGTTGCACAGAAAGATGGTTAAATCTTGTTTACTTGG
GAACAATTAAGACATCTGTTTAGCAATTGAACACGTCTACGTAGTAAGTT
TTGAAAAATTTTGCAATTTAATATTATAGTTTTATCGTTTTTAGCATTAT
CTTCTTTGCCATGGTGAAAAGAACTTTCCATGTGAGAGATGTGGAAGAAA
GTTTGGAACTGAGATGTCATCCATACAACATTATCATCAATGTCGTAAAT
TGTTCTACTGCTCCTGTGGTCTCAATTACTCGAACAAACATTTGTTGAAA
TCTCACCTGTTGAAGAATGACCGTCAGCAACATCATGCTGTACCTGACCC
TGATGAAGAAATGGAAAAAGAGAAAGAAAAACATCAAAGAGAAAAGTATT
CTATTCATTGTGTTAATTCTTTAATCTTCGGTTTTGAAATTTACTTAATT
TGCATTGAAATGTTGAAATTTAGGATATTGGCTGCGGGGAATCTCTGTGT
GTATAGATTACTCTGCTAATATGCTAGAGGAACATCTCTTTTTTAAAGGC
TTTTTACATATACCGCAACTTTTCTATTCGACTTTATTTTTCATAGAGCA
ACAGCAGCACAAAATCAAATGGTTAGCCTTCCTTGTTTTCTGTACATTCC
AAAAGATAACACAAATGAGCTTCAACAACAACAACAACAACAACCCTCTC
TGACAACCAACTCTCAATTGATTCAATATCCTGATAATGCAACCCTTCAA
CAAAATCAAGAACGATTCATTCGAATTTTACCCAAGAAACAACAAAGAGC
ACATCAAGAACCATTCCAGTTTATAAATCCAACACAAATAGCAGGGTATT
GTACATCTATGAATCCTTTCCAATCTTTACCCCATATTTTCAATGTGATG
AACTCAAGCCAACTACAACCAGAGACTAGTCAACAATGTAAACAGCGCCA
AATACTACCCTCCAGTGCTCCAGTGCAAACATTACCAACCCAAACTCAAC
AAGATCCAATGTTACAAACTTCCTCATCTCTTGATTGTGAAAAGTCAACT
GAAAAACCAATTCATAAAGCCAAAGTGAAAAAACCGAAAGTTAAAAAACC
AAAAAAATCCGAACCTAAGAAGCAAAAAGCAAAAAAGGTGAAAATAAAAG
AATCAAGATTCGAGAAGCATATGAAATTTATCACTTCAAAGGAAACACAG
GAGATTCTAGCCGATGATGAACTTATTCAATCCACTTTATCCAGCCTGCA
GAATGCAAAATGCAATTGTGCGTTATTCAAAGCAGGTAAGGTTTGCCGTC
ATTTCTCTCCCAAGAAAGCAGCCTTCATTCAAAAGTCGAACAGACCTGCC
AGTGAAAATTTGATCACAAACTTCACACAGACAATGAGCACACAGGCTCA
AGCCACTGAACAGGTGCACACTGGCATCCAGACTAACAACGACACGCAGT
TCCCCATGGTGGAAGTCATGGAAACGTCCGATTTCAGTATTCAATGTCGA
CTATCGAATACAGGTGTCACTTCACAAGACGCATCAACTCAAGACACAAG
TAGTATGCTTCCCATCCCTATCATTGATAACCAGACACAAACAGACGATT
TAGTGACCCTACTCGACAGCTTACAAACCAATGCGCATCTCGCTGATATG
GAAACCCAAACATATTCTGCGGAAAACGACAAGTCTACCTTACTGGATGA
TATTCTGAGCGGAAAGACGTGGGATAACGAGGCCAGTATTTATGTGAGGG
AGACACACAATGAGAATAATCACATCCCTTCATTATTCATGACTGAAGGA
GACACGGAATGCAAACAAAACAATTCCACTCAAACTTTGGATGCGGCGTG
TGGCGTTGCATTTGATGTGCACCAAAACACGACGATCAGTGACAAAGACA
TTGTGTTACCTTCACAGAACAATCATTTCATTGAACCTTTAAACATGAGT
TTTGGTACACAGACAGTCTTTGATGACGACAGCCTTTCTCAAGAAACATT
CAGCTTTGGGACACAAACAGGAGGATTTGAGAGCAATATGTTCAGCAGTT
CAGCAACACAGACTTGGGATGTGAGCGAGACTTCAATAAATGCCAAAACC
ACAATAGAAACACAAACGGCAATTTCGTTTGCTGATCTTTTGGATTCTTC
GTTCATTGATGAATATCTGAGCACTGAGCAAAGCACCTCAACTGAAACCC
AAACTCCATTTGATCAAAACAGAGAGGTGGTCACCGCTGAAACTCAAACC
CTGTGAATGATATCTTTTCAACGAAATTTTTCGCTGTTTATACTTTTTTG
TCTTTTTGTCTATCAAGCTTTTGTTTTTGCTATTTCTTCAGAGATGATTT
TTTATATCAATCTTTGCTTATAATAACCTTATACTTTTAATCGTTCCATA
AGAAAAATTATTTTTTGCTTCGTTTTTCTAAGATTTCGTTTTATTAGCAC
GTTATAGTACTTTGTTATAATATGTTTATTCCTATGAAACTTTTTTTTCG
TTTTTTTGAAAAAGTCGTTTGATGTACAAATTTATTTTATTATACATTGT
TTATAATTTCTCTTTATGATAGATTTTTATAAAATGCCAACAAAAAAGAA
AACGTTAATTTATACCTAGAGTTTATGTTCGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008210-exon-sc0000082-1575043694:655122..655479 | TCONS_00008210-exon-sc0000082-1575043694:655122..655479 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1575043694:654433..654683 | TCONS_00008210-exon-sc0000082-1575043694:654433..654683 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1575043694:653878..654231 | TCONS_00008210-exon-sc0000082-1575043694:653878..654231 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1575043694:653185..653435 | TCONS_00008210-exon-sc0000082-1575043694:653185..653435 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1575043694:650946..652983 | TCONS_00008210-exon-sc0000082-1575043694:650946..652983 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1510915933:655122..655479 | TCONS_00008210-exon-sc0000082-1510915933:655122..655479 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1510915933:654433..654683 | TCONS_00008210-exon-sc0000082-1510915933:654433..654683 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1510915933:653878..654231 | TCONS_00008210-exon-sc0000082-1510915933:653878..654231 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1510915933:653185..653435 | TCONS_00008210-exon-sc0000082-1510915933:653185..653435 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1510915933:650946..652983 | TCONS_00008210-exon-sc0000082-1510915933:650946..652983 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1491911889:655122..655479 | TCONS_00008210-exon-sc0000082-1491911889:655122..655479 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1491911889:654433..654683 | TCONS_00008210-exon-sc0000082-1491911889:654433..654683 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1491911889:653878..654231 | TCONS_00008210-exon-sc0000082-1491911889:653878..654231 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1491911889:653185..653435 | TCONS_00008210-exon-sc0000082-1491911889:653185..653435 | Clytia hemisphaerica | exon |
| TCONS_00008210-exon-sc0000082-1491911889:650946..652983 | TCONS_00008210-exon-sc0000082-1491911889:650946..652983 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000082 | supercontig | sc0000082:650946..655479 - |
Blast
The following BLAST results are available for this feature:
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