TCONS_00008207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008207
Unique NameTCONS_00008207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008207 ID=TCONS_00008207|Name=TCONS_00008207|organism=Clytia hemisphaerica|type=transcript|length=1234bp
CGGAGTCTCGCAAGGGTTGATTAATTTATTGCTAGTTGTGATTAATCTAT
TGATAGAACTTTTGTTTGTCAATATATGCATTCTGTGACGCAACTTTCCA
TCGGCTACTACAAGTAACCTGACACCTCTCAgcagaacaaaaataaaaac
aaagaaattactTCTGTAGATTTGCTCAAACATGTTACATACAATTAGCC
AAAGAATCGATTTCAGATGTCAGATGATGTGAGAAGACGAAGGGTCCACA
CATATTTGATATCATTTAGTACGAGACGGACAAAAGACACAATGAAGGGG
GTTTCATTCGCATTTTTCGTTCTTTCAGTACTTGCAGTTTTAGCATACGG
CAGATACCATCGAcatcttgatgacgtcacatcACGTGACATAGAGGAAT
ATTTGGAATCCAAATATGGACttaaagaagaaaacgaagattTTTCACTG
GATGAAGATGACGATGAAGATGAAGTTCTGAGAAACTCTGAACGATTTCA
CGATCCAAGAGCAAGGTGGACATCATGGCGCCCTCGTATCGGTGGCATGA
TCAAACGGAACATTATCGTTCGGGCGTTGAAACCAAGCTGTGCTGGATGT
GCGGGGATTTGTGAGCGAAAAGTTGCTGGACGTTGCGCATGTGTAGTAGA
CCAGAGATGCATCAGACAAAGATATGGGAAAAAATGAATTATCTTATTGT
AGTTCTTTTCCtttaattaaatttaattttaagaaatatgagttttacaa
attttgagtaaattgaGAATTTGTATATacaataatttgaatttttttac
taaaGAATGAATAAAAATAGAATCTTGATAGTGAAAACTTAAAGTCACTA
TTGttttaattttgcgaaaatcCAATTTCAGCGAAAATTTAAGAGTCGTC
CGTTCGTTTAGACAGCTAGTATATAGCGTTGGAAATATATTGAAGCTATA
GATTTTGACTAGATTTATGAAAAGGCAGAAATTACTTAGCAAATCTCAAA
ATCGTTAGTTTTAGGATGTTTTGGAGGATTTTCATTTGAGTCTTGTTGTG
TTTCATGGTTCATGAAACCACGTACCATCGCCTCATGATCGTTTGTGAAA
GACCGGTAACCATTTGTGTTTTCATACACGTTGTTCACAATATCAATAGC
AGTCTTCATGAGATGTTTGTCAACTCTATCACGAAGTTTCCTTCTTGCTC
CCTCTAACCGATTCGCTAAATTTTTATAACCCAG
Run BLAST on NCBI

protein sequence of TCONS_00008207-protein

>TCONS_00008207-protein ID=TCONS_00008207-protein|Name=TCONS_00008207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MSDDVRRRRVHTYLISFSTRRTKDTMKGVSFAFFVLSVLAVLAYGRYHRH
LDDVTSRDIEEYLESKYGLKEENEDFSLDEDDDEDEVLRNSERFHDPRAR
WTSWRPRIGGMIKRNIIVRALKPSCAGCAGICERKVAGRCACVVDQRCIR
QRYGKK
Run BLAST on NCBI

transcript from alignment at sc0000082:598562..601491-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008207 ID=TCONS_00008207|Name=TCONS_00008207|organism=Clytia hemisphaerica|type=transcript|length=2930bp|location=Sequence derived from alignment at sc0000082:598562..601491- (Clytia hemisphaerica)
CGGAGTCTCGCAAGGGTTGATTAATTTATTGCTAGTTGTGATTAATCTAT
TGATAGAACTTTTGTTTGTCAATATATGCATTCTGTGACGCAACTTTCCA
TCGGCTACTACAAGTAACCTGACACCTCTCAGCAGAACAAAAATAAAAAC
AAAGAAATTACTTCTGTAGATTTGCTCAAACATGTTACATACAATTAGCC
AAAGAATCGATTTCAGATGTCAGATGATGTGAGAAGACGAAGGGTCCACA
CATATTTGATATCATTTAGTACGAGACGGACAAAAGACACAATGAAGGGG
GTTTCATTCGCATTTTTCGTTCTTTCAGTACTTGCAGTTTTAGCATGTAA
GTTTACGAATGTTTCGTTAATTTCCTTTCTCTTCTGCGCGAATTTTATTG
ACCCATAATCCTCATCGTATCGTGTTTTTTGAAAAACATAAAAAATGAAG
CGACTGCTTAGGTAGAAATTTTCGTCATCTTTCGTGACTTCATCAGCATA
TAGCTCAACAAAAAATGATATCCTTTTATATGGAAGCTAGAAATTTCACA
AAAACGTAAATAATAAAAACAATTTAAAAGCTATAACTATGTACAATACA
CCTTTCCCGAGTTTATTTCGACTTTTTGAAAAATGCTATTCCAAAACCCT
GCTCTACTTGCATTTAATTTAGAAAGATTCTACTACGAAATACAAAATCA
ACAAAGAAAGAATTGTGTTAAAAGCTCTTCCGGTTCTTGAGATATTTAAA
TTTTAAAGTTTTTTTTAAAACAAAAGTATCCCATGGAAACGGAATAGAAA
CGAGGCCCGGTAGGATAAAATATCTTTTAAGAGAGGTTTGACTGTAAAAA
CAAAGGAATTAAAACAGCTATAAAAAAGAAACGGAAAAAGCTTTTGATCT
CAAATTTTCAGAATGACTTTGTATCACCAAACGCTTCAAAAGTATCAAGT
TCTCGTTCGAAATTCCCTAGATACAATAAGAAAAAAATATATATATTCCT
ATGAGACTGCATAATAATACCGCAGTAATAAAAATGGCTAAAATTGAAAA
ATTAGATATTAAAAGAAAATTCGCAAGGGAATATGCACGCAGACGTAGAT
TGAAGTATAAAAAACGAAAAAATCGACTAGAACTCCCTTCTGGGTTTTTC
AGAGAAATAGTCTAAAATAAATAAAACAGAAATCTAATTACATCGGATAA
AACAGTAGATCAGTAGTGTTTTTTGAAGATAGTCCAAAAGGTAAAAATAA
GCTTTCAATATGCAAATCAATCTTTATTCGTATGCAATTTTTTTACAGAT
AATATAAAACCGAAAATGTCAGGAATCAATAGGCCTTTTCATAAATTACG
TCACGAACATCACTTGCCTCTTATTCAAACAATTACCATGGTTATTTATT
TGTCCCTTGAGAAAAAAAATGATTTTTTATGATAATAGAAAGTAGTTTTA
ATAAAATCTGCTGGGAGTTAATCACCATGGCAATAATTTCAAAACGAGGC
AAGTGATGTTCGTGACGTAATTTATGAAAAAGGTCTATTTGATGTAGCGA
GAAAAAGAGAAAAAGGGCCAAAAAAGTTGATCATCGTTGATCGAGTGGCC
CTTTGATAGTGATACTAGATATCACAAAATATTTTGCATATGGTGTGTAT
TGAGGTTTCTCCTTTCTTCTTTGACAGACGGCAGATACCATCGACATCTT
GATGACGTCACATCACGTGACATAGAGGAATATTTGGAATCCAAATATGG
ACTTAAAGAAGAAAACGAAGATTTTTCACTGGATGAAGATGACGATGAAG
ATGAAGTTCTGAGAAACTCTGGTACGCAAAAAAGAATATATCTTTCGGAG
AGGTCATCATAATTTCTTTTGCAAAACTCTGGTACGCAAAAAAGAATATA
TCTTTCGGAGAGGTCATCATAATTTCTTTTGCAAAATAACCGAATGATCC
GAAATCCCGCATCTAAAAATAGGGGGGGGGGGGGGGGGGTGAAATTATCA
AGACCATCAAGACAGGGTTATTTTTGGATTATTCTTCCGGTTGAGGTTTT
ACGCCTTCTGAAAATTTTAAGAGACCCACCTCGTACCCAGAGTCACCGCA
GACCTCTGCAAAACCCCAGGTAGTAATAATGGAAGAATGATAAAAAAAAC
GATTCAACTTTTCACTTTTTTCTTATTTTTAATCAGAACGATTTCACGAT
CCAAGAGCAAGGTGGACATCATGGCGCCCTCGTATCGGTGGCATGATCAA
ACGGAACATTATCGTTCGGGCGTTGAAACCAAGCTGTGCTGGATGTGCGG
GGATTTGTGAGCGAAAAGTTGCTGGACGTTGCGCATGTGTAGTAGACCAG
AGATGCATCAGACAAAGATATGGGAAAAAATGAATTATCTTATTGTAGTT
CTTTTCCTTTAATTAAATTTAATTTTAAGAAATATGAGTTTTACAAATTT
TGAGTAAATTGAGAATTTGTATATACAATAATTTGAATTTTTTTACTAAA
GAATGAATAAAAATAGAATCTTGATAGTGAAAACTTAAAGTCACTATTGT
TTTAATTTTGCGAAAATCCAATTTCAGCGAAAATTTAAGAGTCGTCCGTT
CGTTTAGACAGCTAGTATATAGCGTTGGAAATATATTGAAGCTATAGATT
TTGACTAGATTTATGAAAAGGCAGAAATTACTTAGCAAATCTCAAAATCG
TTAGTTTTAGGATGTTTTGGAGGATTTTCATTTGAGTCTTGTTGTGTTTC
ATGGTTCATGAAACCACGTACCATCGCCTCATGATCGTTTGTGAAAGACC
GGTAACCATTTGTGTTTTCATACACGTTGTTCACAATATCAATAGCAGTC
TTCATGAGATGTTTGTCAACTCTATCACGAAGTTTCCTTCTTGCTCCCTC
TAACCGATTCGCTAAATTTTTATAACCCAG

Coding sequence (CDS) from alignment at sc0000082:598562..601491-

>TCONS_00008207 ID=TCONS_00008207|Name=TCONS_00008207|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at sc0000082:598562..601491- (Clytia hemisphaerica)
AACGATTTCACGATCCAAGAGCAAGGTGGACATCATGGCGCCCTCGTATC
GGTGGCATGATCAAACGGAACATTATCGTTCGGGCGTTGAAACCAAGCTG
TGCTGGATGTGCGGGGATTTGTGAGCGAAAAGTTGCTGGACGTTGCGCAT
GTGTAGTAGACCAGAGATGCATCAGACAAAGATATGGGAAAAAATGAACG
GCAGATACCATCGACATCTTGATGACGTCACATCACGTGACATAGAGGAA
TATTTGGAATCCAAATATGGACTTAAAGAAGAAAACGAAGATTTTTCACT
GGATGAAGATGACGATGAAGATGAAGTTCTGAGAAACTCTGATGTCAGAT
GATGTGAGAAGACGAAGGGTCCACACATATTTGATATCATTTAGTACGAG
ACGGACAAAAGACACAATGAAGGGGGTTTCATTCGCATTTTTCGTTCTTT
CAGTACTTGCAGTTTTAGCATAACGATTTCACGATCCAAGAGCAAGGTGG
ACATCATGGCGCCCTCGTATCGGTGGCATGATCAAACGGAACATTATCGT
TCGGGCGTTGAAACCAAGCTGTGCTGGATGTGCGGGGATTTGTGAGCGAA
AAGTTGCTGGACGTTGCGCATGTGTAGTAGACCAGAGATGCATCAGACAA
AGATATGGGAAAAAATGAACGGCAGATACCATCGACATCTTGATGACGTC
ACATCACGTGACATAGAGGAATATTTGGAATCCAAATATGGACTTAAAGA
AGAAAACGAAGATTTTTCACTGGATGAAGATGACGATGAAGATGAAGTTC
TGAGAAACTCTGATGTCAGATGATGTGAGAAGACGAAGGGTCCACACATA
TTTGATATCATTTAGTACGAGACGGACAAAAGACACAATGAAGGGGGTTT
CATTCGCATTTTTCGTTCTTTCAGTACTTGCAGTTTTAGCATAACGATTT
CACGATCCAAGAGCAAGGTGGACATCATGGCGCCCTCGTATCGGTGGCAT
GATCAAACGGAACATTATCGTTCGGGCGTTGAAACCAAGCTGTGCTGGAT
GTGCGGGGATTTGTGAGCGAAAAGTTGCTGGACGTTGCGCATGTGTAGTA
GACCAGAGATGCATCAGACAAAGATATGGGAAAAAATGAACGGCAGATAC
CATCGACATCTTGATGACGTCACATCACGTGACATAGAGGAATATTTGGA
ATCCAAATATGGACTTAAAGAAGAAAACGAAGATTTTTCACTGGATGAAG
ATGACGATGAAGATGAAGTTCTGAGAAACTCTGATGTCAGATGATGTGAG
AAGACGAAGGGTCCACACATATTTGATATCATTTAGTACGAGACGGACAA
AAGACACAATGAAGGGGGTTTCATTCGCATTTTTCGTTCTTTCAGTACTT
GCAGTTTTAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004608XLOC_004608Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008207-proteinTCONS_00008207-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008207-exon-sc0000082-1575043694:601146..601491TCONS_00008207-exon-sc0000082-1575043694:601146..601491Clytia hemisphaericaexon
TCONS_00008207-exon-sc0000082-1575043694:599671..599814TCONS_00008207-exon-sc0000082-1575043694:599671..599814Clytia hemisphaericaexon
TCONS_00008207-exon-sc0000082-1575043694:598562..599305TCONS_00008207-exon-sc0000082-1575043694:598562..599305Clytia hemisphaericaexon
TCONS_00008207-exon-sc0000082-1510915933:601146..601491TCONS_00008207-exon-sc0000082-1510915933:601146..601491Clytia hemisphaericaexon
TCONS_00008207-exon-sc0000082-1510915933:599671..599814TCONS_00008207-exon-sc0000082-1510915933:599671..599814Clytia hemisphaericaexon
TCONS_00008207-exon-sc0000082-1510915933:598562..599305TCONS_00008207-exon-sc0000082-1510915933:598562..599305Clytia hemisphaericaexon
TCONS_00008207-exon-sc0000082-1491911889:601146..601491TCONS_00008207-exon-sc0000082-1491911889:601146..601491Clytia hemisphaericaexon
TCONS_00008207-exon-sc0000082-1491911889:599671..599814TCONS_00008207-exon-sc0000082-1491911889:599671..599814Clytia hemisphaericaexon
TCONS_00008207-exon-sc0000082-1491911889:598562..599305TCONS_00008207-exon-sc0000082-1491911889:598562..599305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:598562..601491 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.346124	0.168763	0.47028	0.30673	0.606798	0.516385	5.96297	4.87423	20.3004	14.0539	23.53	16.3667	59.3907	62.7058	95.0078	108.644	56.9297	42.6381	107.401	98.1417	17.3015	16.6496	34.368	30.8486	24.0437	20.8283	13.9059	17.1201	186.707	148.383
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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