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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008204 ID=TCONS_00008204|Name=TCONS_00008204|organism=Clytia hemisphaerica|type=transcript|length=1436bpRun BLAST on NCBI transcript from alignment at sc0000082:560665..569839- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008204 ID=TCONS_00008204|Name=TCONS_00008204|organism=Clytia hemisphaerica|type=transcript|length=9175bp|location=Sequence derived from alignment at sc0000082:560665..569839- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008204 vs. Swiss-Prot (Human)
Match: CBPA4 (Carboxypeptidase A4 OS=Homo sapiens GN=CPA4 PE=1 SV=2) HSP 1 Score: 262.692 bits (670), Expect = 1.172e-81 Identity = 148/390 (37.95%), Postives = 223/390 (57.18%), Query Frame = 1
Query: 130 NQVLRIIPSNDVQLKVLKKWISSNPL-VDLWKEPSAPGHVVDIHMPKGKISSFEKLLTAHGISYNIMVPDVEDLLNEEELSNMKNGFSAYAFNAFDYNKFNDWPEIRRELENLVSIYSSKASLFNVGKTYKGEEQIGIKVTNGDGRSKPVVWIDGGIHAREWISPATVMYFMNKMLID-QTDRRVSQALAKYDFFFMPVFNIDGYKYTFTGRQARLWRKTRK--PYSWYQFPCKGADPNRNWDSHWDEAIGTSDFCMYENYRGPKPFSEVEVANVARFL-KTLNLKSYWNVHAYGQYVLYPWSWTKKPAPEAAQMKNVGDVFAAAARLRYGTLYQVGQPADILYAVSGGSIDYTYEKLGVVYSYALELRDTGRYGFVLPANQIQPSGEET 1284
+QVLRI N ++ L + ++SN L ++ WK PS+ VD+ +P + +F+ L + G+ Y + + D++ LL+ E+ N + N F+Y ++ I E++N+ + + A +G +++ +K + G G +P VW++ GIH+REWIS AT ++ K++ D Q D ++ L K D F +PV N DGY YT T Q RLWRKTR P S C GADPNRNW++ + G SD E Y GP SEVEV +V F+ K N K + ++H+Y Q ++YP+ ++ K AP+A ++ V + A A GT YQVG +Y SG SID+ Y+ G+ +++ ELRDTG YGF+LPANQI P+ EET
Sbjct: 24 DQVLRINVRNGDEISKLSQLVNSNNLKLNFWKSPSSFNRPVDVLVPSVSLQAFKSFLRSQGLEYAVTIEDLQALLDNEDDEMQHNEGQERSSNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQT--QNRLWRKTRSRNPGS----SCIGADPNRNWNASF-AGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHSYSQLLMYPYGYSVKKAPDAEELDKVARLAAKALASVSGTEYQVGPTCTTVYPASGSSIDWAYDN-GIKFAFTFELRDTGTYGFLLPANQIIPTAEET 405 The following BLAST results are available for this feature:
BLAST of TCONS_00008204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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