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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008196 ID=TCONS_00008196|Name=TCONS_00008196|organism=Clytia hemisphaerica|type=transcript|length=1188bpRun BLAST on NCBI transcript from alignment at sc0000082:554886..569663- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008196 ID=TCONS_00008196|Name=TCONS_00008196|organism=Clytia hemisphaerica|type=transcript|length=14778bp|location=Sequence derived from alignment at sc0000082:554886..569663- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008196 vs. Swiss-Prot (Human)
Match: CBPA2 (Carboxypeptidase A2 OS=Homo sapiens GN=CPA2 PE=1 SV=3) HSP 1 Score: 285.034 bits (728), Expect = 2.177e-91 Identity = 150/380 (39.47%), Postives = 227/380 (59.74%), Query Frame = 2
Query: 65 AYEEFRGNQVLRIIPSNDVQLKVLKKWISSNPL-VDLWKEPSAPGHVVDIHMPKGKISSFEKLLTAHGISYNIMVPDVEDLL---NEEELSNMKNSFYSSFDYNKYNRWSDIKMELQNLARSNRGIVSLFQVGRTYEGETMIGLKVTNGDGRSKPVVWIDGGIHAREWISPATVMYFMNKMITQQRSDNRVAQALAKYDFYFMPVFNIDGYKYTHTGRRARFWRKTR-KPYGWYCYGADPNRNWDSHWETGVGTSSNCQSDVYRGPQPASEVEVQNVQRYLGAL-NLKSYWNVHAYSQLVLTPWSWTTTLPRDYSEIKRVGDVFANAVSRRYGTQYKVGPPSRILYAVSGGSIDYTYEKLGVVYSYALELRDTGRYGFVL 1186
E F G+QVL I+PSN+ Q+K L + + L +D WK P+ PG + +P + + + L + GI+Y+IM+ DV+ LL NEE L N + +F++ Y+ +I E+ NL + G+VS +G ++E M LK + G KP +W+D GIHAREW++ AT ++ NK+++ D + L D + +PV N DGY ++ T + R WRKTR K G C G DPNRNWD+ + G G SSN SD Y GP SEVEV+++ ++ + +K++ +H+YSQL++ P+ + T D+ E+ V A ++ +GT+YKVGP ++Y SGGSID++Y+ G+ YS+A ELRDTGRYGF+L
Sbjct: 18 CLETFVGDQVLEIVPSNEEQIKNLLQLEAQEHLQLDFWKSPTTPGETAHVRVPFVNVQAVKVFLESQGIAYSIMIEDVQVLLDKENEEMLFNRRRERSGNFNFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGG--DKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQT--KNRMWRKTRSKVSGSLCVGVDPNRNWDAGF-GGPGASSNPCSDSYHGPSANSEVEVKSIVDFIKSHGKVKAFITLHSYSQLLMFPYGYKCTKLDDFDELSEVAQKAAQSLRSLHGTKYKVGPICSVIYQASGGSIDWSYD-YGIKYSFAFELRDTGRYGFLL 391 The following BLAST results are available for this feature:
BLAST of TCONS_00008196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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