TCONS_00008193 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008193
Unique Name	TCONS_00008193
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1188

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000082:554886..557674-

transcript sequence

>TCONS_00008193 ID=TCONS_00008193|Name=TCONS_00008193|organism=Clytia hemisphaerica|type=transcript|length=1188bp
ATTTGATGcaaagatgaagatgaaaatatttttctgttttgttgtTTCGT
TTTTCATTGTAAAAGCGTACGAAGAATTCAGAGGGAACCAAGTGCTTCGT
ATCATCCCATCCAACGATGTTCAACTAAAAGTTCTCAAGAAATGGATTTC
AAGCAACCCTTTGGTTGATCTTTGGAAAGAGCCAAGTGCACCTGGCCACG
TTGTAGACATCCACATGCCAAAAGGAAAGATCTCATCTTTCGAGAAATTG
TTGACAGCCCATGGAATTTCTTATAATATCATGGTCCCTGATGTGGAAGA
TCTTTTGAATGAAGAAGAACTCTCCAACATGAAGAACAGCTTCTATTCTT
CTTTTGACTACAATAAATATAACCGTTGGTCTGATatcaAAATGGAATTA
CAAAACTTGGCTCGTTCTAACCGAGGAATAGTCTCTTTGTTTCAAGTTGG
ACGAACTTATGAAGGAGAAACTATGATCGGCCTTAAGGTGACAAACGGTG
ACGGGCGATCAAAACCAGTGGTTTGGATTGATGGAGGTATCCATGCAAGA
GAATGGATTTCACCCGCCACTGTCATGTACTTCATGAACAAGATGATTAC
TCAACAACGATCAGACAATCGTGTCGCACAAGCCTTAGCCAAATACGATT
TCTACTTCATGCCCGTTTTCAACATTGACGGATACAAATACACTCACACC
GGCCGACGTGCCCGTTTCTGGCGTAAAACACGTAAACCTTACGGATGGTA
CTGCTACGGAGCTGACCCTAACCGTAACTGGGACAGTCACTGGGAAACTG
GTGTCGGAACAAGCTCCAACTGTCAATCCGATGTTTACAGAGGCCCACAA
CCAGCCTCCGAAGTTGAAGTTCAAAACGTTCAAAGATACCTTGGAGCACT
GAACTTGAAATCATACTGGAACGTTCACGCTTACAGCCAACTTGTCTTAA
CACCATGGTCGTGGACCACCACTCTCCCAAGAGATTACTCGGAAATTaaA
CGTGTTGGAGATGTTTTCGCCAATGCTGTCAGTCGACGATACGGAACTCA
ATACAAGGTCGGACCTCCATCAAGAATCTTATaCGCTGTATCCGGAGGAA
GTATCGATTATACTTATGAAAAATTGGGTGTCGTCTACTCGTATGCTTTG
GAGCTTCGTGATACTGGTCGCTATGGTTTCGTCCTCCN

Run BLAST on NCBI

transcript from alignment at sc0000082:554886..557674-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008193 ID=TCONS_00008193|Name=TCONS_00008193|organism=Clytia hemisphaerica|type=transcript|length=2789bp|location=Sequence derived from alignment at sc0000082:554886..557674- (Clytia hemisphaerica)
ATTTGATGCAAAGATGAAGATGAAAATATTTTTCTGTTTTGTTGTTTCGT
TTTTCATTGTAAAAGCGTACGAAGAATTCAGAGGGTAAGGCTTTAATCTT
TTCAATGTTTGACGAACAAGACATCTTATTGAATCATTGTAATCTTTCTT
TGACCTCAACATTTCCAGGAACCAAGTGCTTCGTATCATCCCATCCAACG
ATGTTCAACTAAAAGTTCTCAAGAAATGGATTTCAAGCAACCCTTTGGTG
AGTGTCCTTTTTTATTAGAAAAGAAGAGAAGAAAATGGGAATAACGAAGG
AACTTGATTTTTACAAAATTGATTTGCAGGGGGCCAGAGTGTCCTAGGTT
ATAAAATATCAAAAAAAAATGCTTATTAGTTTCCTGCAAGATCTTTTCTC
TTGCATACCTTAGGTTGATCTTTGGAAAGAGCCAAGTGCACCTGGCCACG
TTGTAGACATCCACATGCCAAAAGGAAAGATCTCATCTTTCGAGAAATTG
TTGACAGCCCATGGAATTTCTTATAATATCATGGTCCCTGATGTGGAAGA
TCTTTTGAATGAAGAAGAACTCTCCAACATGAAGAACAGCTTCTATTCTT
CTTTTGACTACAATAAATATAACCGTTGGTCTGATGTAAGTCGAAGTGTT
CTTATGTTCTTATTCATTTTATGAGAAATTAAAAGAACAAAAATTATTTC
AAGTAAGCAGACTTTTTGTTTCAATAATCAATACATCGAAAAAATTTCGA
ATTTAATTCTTGTCATTTTCTTTTTTTAGATCAAAATGGAATTACAAAAC
TTGGCTCGTTCTAACCGAGGAATAGTCTCTTTGTTTCAAGTTGGACGAAC
TTATGAAGGAGAAACTATGATCGGCCTTAAGGTTAGTTTCCCTTCGAACA
GTTTTCGCTTCGCAACACCAATCGGTGACATTAGACCACTGTCTGGGCAG
TAAATAAAGCTTTTGGTAAAAGGACGTACAAAAGCCAAGCTTCTATCTTA
TATTAATCTGAGCTCAACACGGTGTTTTTGCCCTCATCGGACCAATTGAG
CTCCTTTATATGAACTAACCTACCACCACACCTTATTTTTTTTGACAGGT
GACAAACGGTGACGGGCGATCAAAACCAGTGGTTTGGATTGATGGAGGTA
TCCATGCAAGAGAATGGATTTCACCCGCCACTGTCATGTACTTCATGAAC
AAGGTTAGAGGTTTTAATTTTGAAAAATGAGAACTTTTTCTGGACTATTG
CAGCCTTGTTGCCATGACTCTTATTTGATAAACTACGATTGTATCTCTAT
CTAACTTCAGCTTCAAAATTTAGGGCTGCGTGTTTCTTATGTAAGAAAGT
TTTATACTAAACTTCAACATTTAAGCATTCATTGAAAAATATATTTCTTG
TAGATGATTACTCAACAACGATCAGACAATCGTGTCGCACAAGCCTTAGC
CAAATACGATTTCTACTTCATGCCCGTTTTCAACATTGACGGATACAAAT
ACACTCACACCGGCCGACGTGCCCGTTTCTGGCGTAAAACACGTAAACCT
TACGGATGGTACTGCTACGGAGCTGACCCTAACCGTAACTGGGACAGTCA
CTGGGAAACTGGTATGGGTTATCAAAAATTATTTTCCAGTGCTTGGGGTG
ACCATCAAAAACTTGTATCTCTCCTTTATCTGAATGGACTTACCACATTG
ACACCTTTCTAAGAAACTCCGGGAGCTATTTCCAAAACCTTTCATTAGCT
TAAACGATTTCTACACTTCTTTGTAAATTAAAAGTAAAGAAAATAGGAAA
TCATTGAAATCATTAACCGGAAATATTTCCCCAGGTGTCGGAACAAGCTC
CAACTGTCAATCCGATGTTTACAGAGGCCCACAACCAGCCTCCGAAGTTG
AAGTTCAAAACGTTCAAAGATACCTTGGAGCACTGAACTTGAAATCATAC
TGGAACGTTCACGCTTACAGCCAACTTGTCTTAACACCATGGTCGTGGAC
CACCACTCTCCCAAGAGATTACTCGGAAATTGTAAGTTGTCATGTCCTTA
CGCCCCTCAAATAAAACAATTTTAATCCAAGTTCAATCTCCTTAAAAATG
GAAGTGACCATCTTTCTATCACTAAAATTCTCCCAGGTAGAGTCGACAAG
TTTGTCCTTTTTTAATATTCTTTGGAAATGTTAGGCTACGTCATATTGTT
TTTAAACTGTTAAATCAGGTCCAAATCGTTGAACTGTCCATAGTTTATGC
TACAGAAATACGATTCCAAACAATCACTATAATCTTTGGTTTTCATTTTT
CCAGAAACGTGTTGGAGATGTTTTCGCCAATGCTGTCAGTCGACGATACG
GAACTCAATACAAGGTCGGACCTCCATCAAGAATCTTATGTAAGCTTCCG
TAATTTTATATAATCTTATGTTCGAGCATTAACATGCTAGTATCGTGATC
AATGATCTCCATTACGAGACCTTTCTGATCATAGTTTGAGCTACTTTTAG
TAAACTTGTCGTCAAGAATTGAACTCACTCATTCATCTTAAGTAGATCTG
GATAAATTTCTTCTTGCGATTTCATCATTTCTTGATCTTTAAGTATGACG
TGCGTTAAATGCCGTGATTGAGAGACGTGCTGCTTATTTCGACCCTTAGA
TGGAAATATTTTGATTTCTGTTTTTTTTTGCAGACGCTGTATCCGGAGGA
AGTATCGATTATACTTATGAAAAATTGGGTGTCGTCTACTCGTATGCTTT
GGAGCTTCGTGATACTGGTCGCTATGGTTTCGTCCTCCN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004604	XLOC_004604	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000082	supercontig	sc0000082:554886..557674 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.226602	0.340284	0.00667049	0.126931	7.25388e-07	0	0	0	0.243631	0	0	0	69.512	76.9473	78.3553	181.7	38.2353	45.8358	477.499	533.642	207.426	257.765	218.612	297.296	255.039	217.098	0.228667	0.752589	20.2357	6.40275

Blast

[Close]

BLAST of TCONS_00008193 vs. Swiss-Prot (Human)
Match: CBPA2 (Carboxypeptidase A2 OS=Homo sapiens GN=CPA2 PE=1 SV=3)

HSP 1 Score: 285.034 bits (728), Expect = 2.177e-91
Identity = 150/380 (39.47%), Postives = 227/380 (59.74%), Query Frame = 2

Query:   65 AYEEFRGNQVLRIIPSNDVQLKVLKKWISSNPL-VDLWKEPSAPGHVVDIHMPKGKISSFEKLLTAHGISYNIMVPDVEDLL---NEEELSNMKNSFYSSFDYNKYNRWSDIKMELQNLARSNRGIVSLFQVGRTYEGETMIGLKVTNGDGRSKPVVWIDGGIHAREWISPATVMYFMNKMITQQRSDNRVAQALAKYDFYFMPVFNIDGYKYTHTGRRARFWRKTR-KPYGWYCYGADPNRNWDSHWETGVGTSSNCQSDVYRGPQPASEVEVQNVQRYLGAL-NLKSYWNVHAYSQLVLTPWSWTTTLPRDYSEIKRVGDVFANAVSRRYGTQYKVGPPSRILYAVSGGSIDYTYEKLGVVYSYALELRDTGRYGFVL 1186
              E F G+QVL I+PSN+ Q+K L +  +   L +D WK P+ PG    + +P   + + +  L + GI+Y+IM+ DV+ LL   NEE L N +     +F++  Y+   +I  E+ NL   + G+VS   +G ++E   M  LK + G    KP +W+D GIHAREW++ AT ++  NK+++    D  +   L   D + +PV N DGY ++ T  + R WRKTR K  G  C G DPNRNWD+ +  G G SSN  SD Y GP   SEVEV+++  ++ +   +K++  +H+YSQL++ P+ +  T   D+ E+  V    A ++   +GT+YKVGP   ++Y  SGGSID++Y+  G+ YS+A ELRDTGRYGF+L
Sbjct:   18 CLETFVGDQVLEIVPSNEEQIKNLLQLEAQEHLQLDFWKSPTTPGETAHVRVPFVNVQAVKVFLESQGIAYSIMIEDVQVLLDKENEEMLFNRRRERSGNFNFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGG--DKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQT--KNRMWRKTRSKVSGSLCVGVDPNRNWDAGF-GGPGASSNPCSDSYHGPSANSEVEVKSIVDFIKSHGKVKAFITLHSYSQLLMFPYGYKCTKLDDFDELSEVAQKAAQSLRSLHGTKYKVGPICSVIYQASGGSIDWSYD-YGIKYSFAFELRDTGRYGFLL 391

The following BLAST results are available for this feature:

BLAST of TCONS_00008193 vs. Swiss-Prot (Human)

BLAST of TCONS_00008193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CBPA2	2.177e-91	39.47	Carboxypeptidase A2 OS=Homo sapiens GN=CPA2 PE=1 S...	[more]

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TCONS_00008193 (transcript) - C. hemisphaerica