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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008183 ID=TCONS_00008183|Name=TCONS_00008183|organism=Clytia hemisphaerica|type=transcript|length=1945bp
CGCCGATAAAAAGCAAAGTATCCGCTCATTAATTATTGACTTTGAAAAAG
TTCAagcaagaaaacatttttttgttatttttcattttggataCAAAGTA
TCAGAGGGGAAAGATTTTCTTCTTATTTCTACCAATATTGCAGTCGAAGA
ATCATGAATAATTGAAGGTGCAGCTTTTGTTGTTTTGCCTTTTTCTCCTC
AGCTTCATCTCTTATTTTCGCATCtcctcttttctttttcttcgtcgtta
aaaacattttgatgTGATTGGACTTCATCTCAACTTCATGTCGTGAAAAG
GTAAACGAGGAAAATGGACAacgtttttaatttaaaattccAAAGTCTGC
ATTCTAGCTCTTTCAATCAATGTCGAATCTTTGCATTAGCTTGCTTCAGA
TATGCTCGCATTCATGTTTTCCCCAACATTCAACTCAGTTGTATTAGTTA
ATATAACCCTCCCCCATTTTGACAGCTTTCACAACTCATCTTATTTCATT
TTGgatatggaatttttttcaaacctgGGGAAACTGGGGTCAATTCTCAT
TGTGATCATTTTTAGGATatcgtaaaaatcaaaatcataaaattcaaTCG
CAACGATTCTAAAATATCACTCCGTTTTCAGCAAAcctgtgatgacgtca
ttcaataTAGACAATTCCACGTTGTTGCATAGAAACCAAACCTTCTTCAT
GAGCAGCCTGCTTCCACCATCAGAACCGCCTNCCACGTTGTTGCATAGGA
ACCAAACCTTCTTCATGAGCAGCCTGCTTCCACCATCAGAACCGCCTACC
GCCCTCAACCATTCATTATCCTTCGTCAATGTGGTCAGCCTTTTGATGCT
GGGAACGTTGGTGATTTGCATCATCGGAGGGAACGTTCTTGTCATCAGTG
CTTTCATGACCAACGGGAGGAAGATCCAGACTATCACAAACTATTTTGTC
GTCTCACTGGCGGTCTCTGATATTTTGGTGGGAGTATTCTCCGTACCTTT
TTGGATGCTGGTCGAAATaaaccACGAACAGTCATCTAGTCTGCCACATA
TCGTCTTTCTTGCTTTGGACGTCATGTTAGGTGTGGCATCGATCGTCCAT
CTAACTGTCATTAGTTTAGAGAGATTGTTTGCCGTCATCCGCCCTGCCAC
CCATCGCAACTTATCCCGCCAAACGCACTTGGTTCGTATCGCTGTCTTCG
CTGTTTGGGGCTTCGCCATCGTCAATTCTGCGTTATCTTTCGTGAAAACG
TACTACGGGTGGAAGGCGTATAATATTTACATCGTGGTGATTGGCTTTGT
GGTCCCCGCCCTCATTATTGTCTGTTCGTATGTGGCTATCTACCGCGTGG
CCCAACAACATATCTCcgaacaaaagaaattgaaacaagAAATGCGATTG
GCTGGAATGATCgctattgttattattttgttcATAGTTTGTTGGTTCCC
ATTCTTCCTCATTAACATTTTGTACGAATATTGTTACCCTCCAGAATGCA
GTCACGTCATTATCGAAAAATCGATCCCTTTCGTCAAGTTTTTGCATTAC
TCCAACTCTATGATGAACCCCTTGGTTTACGCGTACCGAAATTCGGACTA
TAGACAAGCTTTCAAGAATCTTCTCCTTTCTTTGTTGAAAAGACAAGCAT
TGAGAAAAAGATCAGCTTCGGGTCTATCTTCGGGCACAGGACGCTCAGAT
CTTGATGACTTCATGGACTCGGTACAGAATTTGAATCAAATGAGCAAGCA
TGAATCTGCCGTGTAAAATCTCTCCAAACAACCTCTCATGAAGTAGAAGG
AGGAGGAGATGAAAGAGAAAACTTTCTgtttaaacatttttcaaacattt
caaaCTGACTTCTCCTTTTTTTGTGAAGGTTTAATTTGATTATAAATCTA
AGGTGCAATTTTAAGAAATATAAGAATATCTAACCAAGGCAATTC Run BLAST on NCBI transcript from alignment at sc0000082:534727..536892- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008183 ID=TCONS_00008183|Name=TCONS_00008183|organism=Clytia hemisphaerica|type=transcript|length=2166bp|location=Sequence derived from alignment at sc0000082:534727..536892- (Clytia hemisphaerica)
CGCCGATAAAAAGCAAAGTATCCGCTCATTAATTATTGACTTTGAAAAAG
TTCAAGCAAGAAAACATTTTTTTGTTATTTTTCATTTTGGATACAAAGTA
TCAGAGGGGAAAGATTTTCTTCTTATTTCTACCAATATTGCAGTCGAAGA
ATCATGAATAATTGAAGGTGCAGCTTTTGTTGTTTTGCCTTTTTCTCCTC
AGCTTCATCTCTTATTTTCGCATCTCCTCTTTTCTTTTTCTTCGTCGTTA
AAAACATTTTGATGTGATTGGACTTCATCTCAACTTCATGTCGTGAAAAG
GTAAACGAGGAAAATGGACAACGTTTTTAATTTAAAATTCCAAAGTCTGC
ATTCTAGCTCTTTCAATCAATGTCGAATCTTTGCATTAGCTTGCTTCAGA
TATGCTCGCATTCATGTTTTCCCCAACATTCAACTCAGTTGTATTAGTTA
ATATAACCCTCCCCCATTTTGACAGCTTTCACAACTCATCTTATTTCATT
TTGGATATGGAATTTTTTTCAAACCTGGGGAAACTGGGGTCAATTCTCAT
TGTGATCATTTTTAGGATATCGTAAAAATCAAAATCATAAAATTCAATCG
CAACGATTCTAAAATATCACTCCGTTTTCAGCAAACCTGTGATGACGTCA
TTCAATATAGACAATTCCACGTTGTTGCATAGAAACCAAACCTTCTTCAT
GAGCAGCCTGCTTCCACCATCAGAACCGCCTNCCACGTTGTTGCATAGGA
ACCAAACCTTCTTCATGAGCAGCCTGCTTCCACCATCAGAACCGCCTACC
GCCCTCAACCATTCATTATCCTTCGTCAATGTGGTCAGCCTTTTGATGCT
GGGAACGTTGGTGATTTGCATCATCGGAGGGAACGTTCTTGTCATCAGTG
CTTTCATGACCAACGGGAGGAAGATCCAGACTATCACAAACTATTTTGTC
GTCTCACTGGCGGTCTCTGATATTTTGGTGGGAGTATTCTCCGTACCTTT
TTGGATGCTGGTCGAAATAAGTAAGATTTTTTTTATGTGAATGAAAATGA
AAGTTCTGTCAAGGATATTTCGAGTGTGAAAGTTTATCAGTGATTTGCGT
TTATTGTTTATTTCCAACAATTCAAAATATCCACAAGTACCCATTTACCA
TTACTCTACCATTATTGCTAGAATTCGCAGCTAAGCATGCTTTGATAATT
GAATAAGCAGATCTCGTCATTTTCTTTTTTCTTTTTTTCAGACCACGAAC
AGTCATCTAGTCTGCCACATATCGTCTTTCTTGCTTTGGACGTCATGTTA
GGTGTGGCATCGATCGTCCATCTAACTGTCATTAGTTTAGAGAGATTGTT
TGCCGTCATCCGCCCTGCCACCCATCGCAACTTATCCCGCCAAACGCACT
TGGTTCGTATCGCTGTCTTCGCTGTTTGGGGCTTCGCCATCGTCAATTCT
GCGTTATCTTTCGTGAAAACGTACTACGGGTGGAAGGCGTATAATATTTA
CATCGTGGTGATTGGCTTTGTGGTCCCCGCCCTCATTATTGTCTGTTCGT
ATGTGGCTATCTACCGCGTGGCCCAACAACATATCTCCGAACAAAAGAAA
TTGAAACAAGAAATGCGATTGGCTGGAATGATCGCTATTGTTATTATTTT
GTTCATAGTTTGTTGGTTCCCATTCTTCCTCATTAACATTTTGTACGAAT
ATTGTTACCCTCCAGAATGCAGTCACGTCATTATCGAAAAATCGATCCCT
TTCGTCAAGTTTTTGCATTACTCCAACTCTATGATGAACCCCTTGGTTTA
CGCGTACCGAAATTCGGACTATAGACAAGCTTTCAAGAATCTTCTCCTTT
CTTTGTTGAAAAGACAAGCATTGAGAAAAAGATCAGCTTCGGGTCTATCT
TCGGGCACAGGACGCTCAGATCTTGATGACTTCATGGACTCGGTACAGAA
TTTGAATCAAATGAGCAAGCATGAATCTGCCGTGTAAAATCTCTCCAAAC
AACCTCTCATGAAGTAGAAGGAGGAGGAGATGAAAGAGAAAACTTTCTGT
TTAAACATTTTTCAAACATTTCAAACTGACTTCTCCTTTTTTTGTGAAGG
TTTAATTTGATTATAAATCTAAGGTGCAATTTTAAGAAATATAAGAATAT
CTAACCAAGGCAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008183-exon-sc0000082-1575043694:535873..536892 | TCONS_00008183-exon-sc0000082-1575043694:535873..536892 | Clytia hemisphaerica | exon |
| TCONS_00008183-exon-sc0000082-1575043694:534727..535651 | TCONS_00008183-exon-sc0000082-1575043694:534727..535651 | Clytia hemisphaerica | exon |
| TCONS_00008183-exon-sc0000082-1510915933:535873..536892 | TCONS_00008183-exon-sc0000082-1510915933:535873..536892 | Clytia hemisphaerica | exon |
| TCONS_00008183-exon-sc0000082-1510915933:534727..535651 | TCONS_00008183-exon-sc0000082-1510915933:534727..535651 | Clytia hemisphaerica | exon |
| TCONS_00008183-exon-sc0000082-1491911889:535873..536892 | TCONS_00008183-exon-sc0000082-1491911889:535873..536892 | Clytia hemisphaerica | exon |
| TCONS_00008183-exon-sc0000082-1491911889:534727..535651 | TCONS_00008183-exon-sc0000082-1491911889:534727..535651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000082 | supercontig | sc0000082:534727..536892 - |
Blast
BLAST of TCONS_00008183 vs. Swiss-Prot (Human)
Match: 5HT4R (5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=HTR4 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 1.666e-25 Identity = 95/325 (29.23%), Postives = 152/325 (46.77%), Query Frame = 3
Query: 819 SFVNVVSLLMLGTLVICIIGGNVLVISAFMTNGRKIQTITNYFVVSLAVSDILVGVFSVPF---------WMLVEINHEQSSSLPHIVFLALDVMLGVASIVHLTVISLERLFAV-IRPATHRNLSRQTHLVRIAVFAVWGFAIVNSALSFVKTYYGW----------------------------KAYNIYIVVIGFVVPALIIVCSYVAIYRVAQQHI------------SEQK----------KLKQEMRLAGMIAIVIILFIVCWFPFFLINILYEYCYPPECSHVIIEKSIPFVKFLHYSNSMMNPLVYAYRNSDYRQAF 1613
S VV L L T+++ I GN+LV+ A + + + TNYF+VSLA +D+LV V +PF W+ E+ +V +LDV+L ASI HL ISL+R +A+ +P +RN + T L RIA+ + G ++ + +SF+ GW K Y I V+ F +P L++V +Y IY A++H SE + +++ E + A + I++ F +CW PFF+ NI+ P + + + +L Y NS +NP +YA+ N +R+AF
Sbjct: 16 SVEKVVLLTFLSTVILMAILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQDIWIYGEVF--------CLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRN--KMTPL-RIALM-LGGCWVIPTFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLMVLAYYRIYVTAKEHAHQIQMLQRAGASSESRPQSADQHSTHRMRTETKAAKTLCIIMGCFCLCWAPFFVTNIV-----DPFIDYTVPGQVWTAFLWLGYINSGLNPFLYAFLNKSFRRAF 323
The following BLAST results are available for this feature:
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