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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008170 ID=TCONS_00008170|Name=TCONS_00008170|organism=Clytia hemisphaerica|type=transcript|length=4519bpRun BLAST on NCBI transcript from alignment at sc0000082:368467..421012- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008170 ID=TCONS_00008170|Name=TCONS_00008170|organism=Clytia hemisphaerica|type=transcript|length=52546bp|location=Sequence derived from alignment at sc0000082:368467..421012- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008170 vs. Swiss-Prot (Human)
Match: ANK1 (Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3) HSP 1 Score: 209.149 bits (531), Expect = 3.461e-54 Identity = 149/478 (31.17%), Postives = 228/478 (47.70%), Query Frame = 3
Query: 1470 LEQKANVNAKDYYGSTPLHFASMRGNVTAARHLLNVKTIDIEAKDRTQMTALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIVELLFDVGEK----------------QGGYTMLAKMIMDQDRDDQ-------TALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINIIRKIPQSSSLLEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYGRSRIVRLLLEESGT-----------------HNIV-------------NDEDDASNTPLHLAALEGHENVLSILLEKGAAVDARNAMLWTPLDCAASRGWTWCAENLLDADSLIDPTDK 2744
L + A+VN G TPLH AS RGNV R LL+ + IE K + ++T LH AA NG + ++LL HGA I+ + + ++P+H A+ H+D V LL + G+ +AK+++D+ T LH+A + H +++L + GA+++ V + TPLH+A G IV+ L++ A NV ETPLH AA + +YLL A+++ + KD +TPL A R + VKLLL+ A+ + A T L++AA E + + + + S + + K TPLH+A+ G ++ E+LL + +A LTPLH+A + IV+LLL G+ N V N E TPLHLAA EGH ++++LL K A + N TPL A G A+ L+ ++D T +
Sbjct: 226 LNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLD-RGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM---TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR 699 HSP 2 Score: 196.438 bits (498), Expect = 2.947e-50 Identity = 141/444 (31.76%), Postives = 211/444 (47.52%), Query Frame = 3
Query: 1515 TPLHFASMRGNVTAARHLLNVKTIDIEAKDRTQMTALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIVELLFDVGEK----------------QGGYTMLAKMIMD-------QDRDDQTALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINIIRKIPQSS-----------------------SLLEEFDKNEN-------TPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYGRSRIVRLLLEESGTHNIVNDEDDASNTPLHLAALEGHENVLSILLEKGAAVDARNAMLWTPLDCAASRGW 2687
TPLH A+ G+ A+ LL+ K ++ T LH A V +LLL+ GA I E +TPLH AS GH+ IV+ L G + G+T +AK ++ + +DDQT LH A GH ++VKL + AN N T +TPLHIA G V L+E EA TPLH AA + ++ + LL+RDA + K+ TPL AV +N++ VKLLL RG T L++AA+++ +V + + S+ +LL N N TPLH+ + +GH+ +VL+ G ++DA TPLH+AS YG ++V+ LL+ VN + +PLH AA +GH +++++LL+ GA+ + ++ TPL A G+
Sbjct: 340 TPLHVAAHCGHHRVAKVLLD-KGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 779 HSP 3 Score: 196.438 bits (498), Expect = 3.101e-50 Identity = 146/425 (34.35%), Postives = 215/425 (50.59%), Query Frame = 3
Query: 1509 GSTPLHFASMRGNVTAARHLLNVKTIDIEAKDRTQMTALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIVELLFDVGEKQGGYTMLAKMIMDQDRDDQTA--------------------LHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINII---RKIPQSSSLLEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYGRSRIVRLLLEESGTHNIVNDEDDASNTPLHLAALEGHENVLSILLEKGAAVDARNAMLWTPLDCAASRGWTWCAENLLD 2714
G+T LH A++ G R L+N ++ A+ + T L+ AA EV LL++GA+ E+ TPL A +GH ++V L + G K G + A I ++ D +TA LH+A + ++ +L +++GA+VNF N TPLHIA G +V+ L++ A IE K + TPLH AA + I LLD A I + K+ +P+ A + D+++ V+LLLQ A+I T L+VAA V ++ P S +L N TPLHIA K H++ +E+LL G+ IDA + LTPLH+AS G IV+ LL+ + N+ N + + TPLH+AA GH V LL+ A V+A+ TPL CAA G T + LL+
Sbjct: 78 GNTALHIAALAGQDEVVRELVNYGA-NVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTK-GKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRAL------NGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE---TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 491 HSP 4 Score: 184.882 bits (468), Expect = 9.490e-47 Identity = 140/446 (31.39%), Postives = 214/446 (47.98%), Query Frame = 3
Query: 1470 LEQKANVNAKDYYGSTPLHFASMRGNVTAARHLLNVKT--------IDIEAKD--------------------RTQMTALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIVELLFDVGEKQGGYTMLAKMIMDQDRDDQTALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINIIRKIPQSSSLLEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYGRSRIVRLLLEESGTHNIVNDEDDASNTPLHLAALEGHENVLSILLEKGAAVDARNAMLWTPLDCAASRGWTWCAENLLDADS 2723
LE AN N G TPL A +G+ HL+N T + I A++ +T T LH AA + V LLL GA + + +TPLH AS G+V +V LL D G + I + +D+ T LH A NGH I ++ + GA + N +P+H+A V+ L++ +A+I+ + TPLH AA + + LLD+ A+ + R + TPL A +K++V ++LLL+ GA I + T L+VA+ + I++ + Q + + TPLH+A+ GH + + LL + ++AK + TPLH A++ G + +V+LLLE + N+ A +TPLH+AA EGH + LLEK A+ +TPL AA G AE LL+ D+
Sbjct: 131 LENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQ----------IETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVAS---FMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT---AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 560 HSP 5 Score: 149.443 bits (376), Expect = 6.281e-36 Identity = 123/447 (27.52%), Postives = 201/447 (44.97%), Query Frame = 3
Query: 1617 TALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIV------ELLFDVGEKQGGYTMLAKMIMDQD-----------------RDDQTALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEAD---------IEAKN--------VLQE------------TPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEED------------------------------CWDVINIIRKIPQSSSLLEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYGRSRIVRLLLEESGTHNIVNDEDDASNTPLHLAALEGHENVLSILLEKGAAVDARNAMLWTPLDCAASRGWTWCAENLL 2711
T+ AA +G+ + L++G DI ++ + LH AS EGHV +V E++ + K+G + + QD + T L++A + H ++VK + GAN N + TPL +A G E +V L+ I A+N +LQ TPLH AA + +N+ + LL+R A ++ ++ TPL A R+ NV V+LLL RGA I+ K + T L+ AA D ++ +R + Q + +++ + TPLH+A+ GH + +VLL G+ +++ TPLH+A K R++ LLL+ + + V ++ TPLH+A+ GH ++ LL++GA+ + N + TPL AA G T A+ LL
Sbjct: 14 TSFLRAARSGNLDKALDHLRNGVDINTCNQNGLNGLHLASKEGHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVT---ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 457 HSP 6 Score: 122.865 bits (307), Expect = 2.747e-29 Identity = 91/314 (28.98%), Postives = 142/314 (45.22%), Query Frame = 3
Query: 1470 LEQKANVNAKDYYGSTPLHFASMRGNVTAARHLLNVKTIDIEAKDRTQMTALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIVELLFDVGEKQ-----GGYTML-----------AKMIMD-------QDRDDQTALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINIIRKIPQSSSLLEEFDKN 2342
LE AN N G TPLH A+ G+V LL K + T LH AA G V +LLL+ A + +TPLH A ++DIV+LL G GYT L A+ ++ + T LHLA + GH ++V L +SK AN N + TPLH+ G + L++ ++A + TPLH A+ + I +V++LL A+++ + K +PL A ++ + + V LLL+ GA + T L +A V ++++ + +S + DK+
Sbjct: 490 LENNANPNLATTAGHTPLHIAAREGHVETVLALLE-KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKH 802 HSP 7 Score: 26.5646 bits (57), Expect = 2.747e-29 Identity = 15/35 (42.86%), Postives = 17/35 (48.57%), Query Frame = 1
Query: 1375 ARLKEESILIYLLEQKANVNAKDYYGSTPLXYWNR 1479
AR + YLL+ KA VNAK TPL R
Sbjct: 445 ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR 479 HSP 8 Score: 124.405 bits (311), Expect = 2.621e-28 Identity = 93/295 (31.53%), Postives = 150/295 (50.85%), Query Frame = 3
Query: 1848 ALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINIIRKIPQSSSLLEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYGRSRIVRLLLEESGTHNIVNDEDDASNTPLHLAALEGHENVLSILLEKGAAVDARNAMLWTPLDCAASRGWTWCAENLLDADSLID 2732
LHLA + GH +V + K + NT LHIA +G++ +V+ LV A++ A++ TPL+ AA N + +V++LL+ A + +D TPL A+++ + V L+ G KV+ A L++AA D ++ + + +L K TPLHIA+ ++ ++LL+ G+ ++ +TPLH+AS+ G +VRLLL+ G +D+ TPLH AA GH + ILL+ GA + A+ +P+ AA C LL D+ ID
Sbjct: 48 GLHLASKEGHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPA----LHIAARNDDTRTAAVLLQNDPNPDVL---SKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDR-GAQIETKTKDEL--TPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEID 332 The following BLAST results are available for this feature:
BLAST of TCONS_00008170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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