TCONS_00008163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008163
Unique NameTCONS_00008163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008163 ID=TCONS_00008163|Name=TCONS_00008163|organism=Clytia hemisphaerica|type=transcript|length=2683bp
AaataatattgataaaatagATAAGAAGTTCTCTTTGAAATTTACATACA
TTGTTGTTGATTCAAGTTTCGGGAAAGTGACAAAACGCAACTTTTCAATT
CCCCTTGCATCGATATCTACTTATCTGCCTtcaattttaaacatgtacaa
agAAAACTTTGAGAAGTATATTTCACATCATGATACATACATAAGCATAA
TGTCCAAAATCACAAAGGGGATTAATTCACAATTATATTAATTAAAATCT
GTAACAGTCAATGTAGGTGTGTCCGGCATGTTGAATAAATaagtgaaaca
taaaaaaagcttttattcttttatttattttttatgtttcactcAATtga
tttgtggcacacccggtagtaTAATTACATATATAATATTCACTCAGCAA
ATCTAATCAATTATCAGCTATATAAAGACGATTTTTTTCCCTTTTGCATA
TTTGTGGTGCATAGAAGAGAGGAAGAGAGTGCAGCTGGAAGAGAAGAAAA
CGTACGATGCCTGTATCATCTCACACTTCAGAAGCTCATGAAACAATCTT
CACAGCAAGTGGCTATTTGGAGAAAATTCCAGAATTGAGGCggataaaag
aagaaaagaatgtGAGTGTTTGTGTTGCGTTGCCTGCTCTCAATGAAGAA
GCTACCATCGAAGACATTCTTCTGACCATCAAAAGTCTGTTGGAGAGAGA
TCTGGTGGATGAATTCTTCGTCATTGATGCTGGTTCGACTGATCAGACAG
TGGAAATCTGCCGACGAAATGACGTCACCGTGTTCGTCAATTCTGACGTA
GAAACTCTTCCTGAGTTCGATTCGTGTCGTGGCAAAGGTGTTCAACTATG
GAAATCGTTGATGTTGAGTAAAAGTGACGTCATATGTTGGGTGGACACCG
ACATTCAGGATTTCAGCGAGAAATATATCTTGGGGCTGATTGGTCCCTTG
ATTTTTCATGACGACATCCAGTTCACTAAAGCCTTCTATAAACGACCCTT
GTACAAAGATGGGCAACGCATTTCTGATAATGGTGGAGGGCGAGTGACGG
AGCTGTGCGCAAGACCGCTGTTCAATCTCCTGCATCCACCCTTGACGAAA
GTCATCCAACCTTTGAGCGGTGAATACGCCATTCGACGCCATGTCGCTGA
AGATTTGCGTTTTTCAAATGGTTTCGGTGTTGAGACGATCCTTTTAGTGG
ACTTCTACCGAAAATATGGATTGGAAGGTTTGGCGCAGGTCGACATGGAT
GAACGTATCCATCGCAACAAAGAGGTCTGTGAATTGTCCAAGACCAGCTT
TGTGATTTGCCAAGTTCTTCTTCAAGTAGAAGGGATGATGAACTGTCCAA
GTATGTTAAATACTCTTGATCCACATACATCGAGCCTATCAAACCGAGTG
GTCGATAAATTCACATCTGTCGAACTCGGTGAGAAACTCCTCCCCTCGGT
CACTGAGATGCACTTTCATAAACAACAAAAGGAAACTTGTGAAATCTTTT
TCGTCCGTCATGGTCAAACTGACTGGAACGTTAATAAGCGAATACAAGGT
CACATGCAAAGTACCTTGAATAACCACGGTCGTGGACAAGTAGAGCATTT
AGCCTCCAAAATGAACAAGGTGTGTATGTCTTTCGATCAAGTTTATTCAT
CTGACCTCGTCCGGTGCATGGAATCGTGCAAAATCATCACTGACACATTA
GGTGTCCAAAACAACAACATCAAACCTTGGACAGAGCTTCGTGAGCGCCA
TTTTGGAGACTGGGAAGGAAAGTCCCACCAAGAAGTGCGTCAAGAAGACC
AGTCATTGGCTGAATTCGTGTTCACGTGGGACGAAATGATGAAGTATCCG
ATTCCCTCGGCTGAGACGGAGCACGAAATGACCGAACGGATCTGCAACGT
TTTAGACGAGATCACCAAAACGCCAGGGAAGAAACTGGTAGTCACACATT
CAGGATTCTTACACGCTGTTTACAGAATCACGAAGAAAATCCCGCTCACA
GCTCACATTCCAACTTTGGACTGGAAGAACAGCGCATGCGCCAAACTAAC
AGTCAATTCCGATTTGCATCAATGGGACTTCGATGTTGTTACAAACACTG
AACTTGTCAAATCGGCGAAAAATATTtaatgatacacgttttttaataag
aacatccaaacatttttgaagccttccgatgtttttaacttttcaagttt
caagcctaaaaatgttcttgacaaatgacatgttcttattttcaccattg
tgtgagcatttttgcccatttCCCTCAGAAATCGGGTGTGTTTTTGAGTC
TGtaacttaaatttttcttaacgtattggccatcgaagccttatgttctt
atatagtttgttttttaaacaaaacgtGTATTAAGCTGAAGCTTTAGGGC
TATTATTTTCATTTGGGGTTAGTTTTTGTAGGTAGAGTTTGTACATGTAA
CATTTGTGTGTGATaggttttaatttttggtaAACGTTGTAAGATTAAAT
TGACTCTAcactttttttgactttccaTCTTCTCATCACTGCAATGCCCT
TGATTAACTACACTCGCAATGAAGCAATTTTCATTGACTGAACCCaacgt
tgtatttcgctgcagcttAAGCTTGCAATGGGCTCTATGTCtatatatgt
tcactgaatacaaaTCAAACCACTCTCctgcgg
Run BLAST on NCBI

transcript from alignment at sc0000082:318865..321547-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008163 ID=TCONS_00008163|Name=TCONS_00008163|organism=Clytia hemisphaerica|type=transcript|length=2683bp|location=Sequence derived from alignment at sc0000082:318865..321547- (Clytia hemisphaerica)
AAATAATATTGATAAAATAGATAAGAAGTTCTCTTTGAAATTTACATACA
TTGTTGTTGATTCAAGTTTCGGGAAAGTGACAAAACGCAACTTTTCAATT
CCCCTTGCATCGATATCTACTTATCTGCCTTCAATTTTAAACATGTACAA
AGAAAACTTTGAGAAGTATATTTCACATCATGATACATACATAAGCATAA
TGTCCAAAATCACAAAGGGGATTAATTCACAATTATATTAATTAAAATCT
GTAACAGTCAATGTAGGTGTGTCCGGCATGTTGAATAAATAAGTGAAACA
TAAAAAAAGCTTTTATTCTTTTATTTATTTTTTATGTTTCACTCAATTGA
TTTGTGGCACACCCGGTAGTATAATTACATATATAATATTCACTCAGCAA
ATCTAATCAATTATCAGCTATATAAAGACGATTTTTTTCCCTTTTGCATA
TTTGTGGTGCATAGAAGAGAGGAAGAGAGTGCAGCTGGAAGAGAAGAAAA
CGTACGATGCCTGTATCATCTCACACTTCAGAAGCTCATGAAACAATCTT
CACAGCAAGTGGCTATTTGGAGAAAATTCCAGAATTGAGGCGGATAAAAG
AAGAAAAGAATGTGAGTGTTTGTGTTGCGTTGCCTGCTCTCAATGAAGAA
GCTACCATCGAAGACATTCTTCTGACCATCAAAAGTCTGTTGGAGAGAGA
TCTGGTGGATGAATTCTTCGTCATTGATGCTGGTTCGACTGATCAGACAG
TGGAAATCTGCCGACGAAATGACGTCACCGTGTTCGTCAATTCTGACGTA
GAAACTCTTCCTGAGTTCGATTCGTGTCGTGGCAAAGGTGTTCAACTATG
GAAATCGTTGATGTTGAGTAAAAGTGACGTCATATGTTGGGTGGACACCG
ACATTCAGGATTTCAGCGAGAAATATATCTTGGGGCTGATTGGTCCCTTG
ATTTTTCATGACGACATCCAGTTCACTAAAGCCTTCTATAAACGACCCTT
GTACAAAGATGGGCAACGCATTTCTGATAATGGTGGAGGGCGAGTGACGG
AGCTGTGCGCAAGACCGCTGTTCAATCTCCTGCATCCACCCTTGACGAAA
GTCATCCAACCTTTGAGCGGTGAATACGCCATTCGACGCCATGTCGCTGA
AGATTTGCGTTTTTCAAATGGTTTCGGTGTTGAGACGATCCTTTTAGTGG
ACTTCTACCGAAAATATGGATTGGAAGGTTTGGCGCAGGTCGACATGGAT
GAACGTATCCATCGCAACAAAGAGGTCTGTGAATTGTCCAAGACCAGCTT
TGTGATTTGCCAAGTTCTTCTTCAAGTAGAAGGGATGATGAACTGTCCAA
GTATGTTAAATACTCTTGATCCACATACATCGAGCCTATCAAACCGAGTG
GTCGATAAATTCACATCTGTCGAACTCGGTGAGAAACTCCTCCCCTCGGT
CACTGAGATGCACTTTCATAAACAACAAAAGGAAACTTGTGAAATCTTTT
TCGTCCGTCATGGTCAAACTGACTGGAACGTTAATAAGCGAATACAAGGT
CACATGCAAAGTACCTTGAATAACCACGGTCGTGGACAAGTAGAGCATTT
AGCCTCCAAAATGAACAAGGTGTGTATGTCTTTCGATCAAGTTTATTCAT
CTGACCTCGTCCGGTGCATGGAATCGTGCAAAATCATCACTGACACATTA
GGTGTCCAAAACAACAACATCAAACCTTGGACAGAGCTTCGTGAGCGCCA
TTTTGGAGACTGGGAAGGAAAGTCCCACCAAGAAGTGCGTCAAGAAGACC
AGTCATTGGCTGAATTCGTGTTCACGTGGGACGAAATGATGAAGTATCCG
ATTCCCTCGGCTGAGACGGAGCACGAAATGACCGAACGGATCTGCAACGT
TTTAGACGAGATCACCAAAACGCCAGGGAAGAAACTGGTAGTCACACATT
CAGGATTCTTACACGCTGTTTACAGAATCACGAAGAAAATCCCGCTCACA
GCTCACATTCCAACTTTGGACTGGAAGAACAGCGCATGCGCCAAACTAAC
AGTCAATTCCGATTTGCATCAATGGGACTTCGATGTTGTTACAAACACTG
AACTTGTCAAATCGGCGAAAAATATTTAATGATACACGTTTTTTAATAAG
AACATCCAAACATTTTTGAAGCCTTCCGATGTTTTTAACTTTTCAAGTTT
CAAGCCTAAAAATGTTCTTGACAAATGACATGTTCTTATTTTCACCATTG
TGTGAGCATTTTTGCCCATTTCCCTCAGAAATCGGGTGTGTTTTTGAGTC
TGTAACTTAAATTTTTCTTAACGTATTGGCCATCGAAGCCTTATGTTCTT
ATATAGTTTGTTTTTTAAACAAAACGTGTATTAAGCTGAAGCTTTAGGGC
TATTATTTTCATTTGGGGTTAGTTTTTGTAGGTAGAGTTTGTACATGTAA
CATTTGTGTGTGATAGGTTTTAATTTTTGGTAAACGTTGTAAGATTAAAT
TGACTCTACACTTTTTTTGACTTTCCATCTTCTCATCACTGCAATGCCCT
TGATTAACTACACTCGCAATGAAGCAATTTTCATTGACTGAACCCAACGT
TGTATTTCGCTGCAGCTTAAGCTTGCAATGGGCTCTATGTCTATATATGT
TCACTGAATACAAATCAAACCACTCTCCTGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004598XLOC_004598Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008163-exon-sc0000082-1575043694:318865..321547TCONS_00008163-exon-sc0000082-1575043694:318865..321547Clytia hemisphaericaexon
TCONS_00008163-exon-sc0000082-1510915933:318865..321547TCONS_00008163-exon-sc0000082-1510915933:318865..321547Clytia hemisphaericaexon
TCONS_00008163-exon-sc0000082-1491911889:318865..321547TCONS_00008163-exon-sc0000082-1491911889:318865..321547Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:318865..321547 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.771384	0.940281	0.436819	0.443987	2.59152	3.68872	4.92243	3.96942	2.53251	3.23533	1.01065	0.385645	0.899342	1.99759	0.444005	0.471012	0.26528	0.904858	0	0	0	0	3.2188	5.38652	0.169366	0.185317	51.0338	39.7971	2.39829	2.40028
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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