TCONS_00008160 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008160
Unique Name	TCONS_00008160
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	893

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000082:271728..275223-
coding sequence from alignment at sc0000082:271728..275223-

transcript sequence

>TCONS_00008160 ID=TCONS_00008160|Name=TCONS_00008160|organism=Clytia hemisphaerica|type=transcript|length=893bp
tttcagggcacagaaagaaaaactaaaattaaaacAACATGCCTGGTGTA
CNAAAtggatttaatttttcagggcactgaaagaaaaactaaaatttaaa
CAACATGCCTGGTGTACGAAGGAAGAAGTCGCGCAGAAATGCCGTCATCA
AAAACCTCAAAGGAATGAGAAAACGCAAGAAGTTGGTCGACCCGTCTATC
GGAGATGAAACACTGAAGAAGCATTGGGATAAATCGAAAACAttgaaaca
aaacatgaaaCATTTAGGACTCGCCTTCAACTCTAATAAATCAAACACTT
CTGGAATGAGCAAAAGGaagaaaatcaccaaaaaaggCATGCTGACGCAA
AATTTGTTGGATGATAATGGTATGGTATTGGACGTTGTAGAAGAACCAAT
CAATAGCGCTGTCATTGATGaattttcAAAGCAAGCAGCAAATGGAAAGA
AAACTGAACGGCATATTTCGCCTggtgaagcaaaattttttatggagCTC
ATACAAAAACATTCCACGAACTATAAGGCGATGGCCAGAGACAAACGAAA
CACGTACCAACACACACCCAAACAACTTCAAAGAAAATGTGAAGGACTTT
TGACATCTAGTTTGTTGCCTAAGTATAAAGAAATGTATCCAGGAATTTTA
CCCGATGACGTCACTACTGAAGAAATGGATGAGTCATAAacctttaaaat
aaatattGCGGTGGCGTGGAGCTTGTTGTAGATATGAAAACGACTCTGAA
AATCGAGAGTGAAGGCAAATTAATCTCATCGATAGACTTGGTTTCATTTT
TGTCACGTTGAAAATATTACGCATGATAGGGTGAATGTCTTTGTTGAAGC
TCTGAGTGTTGTTAGTTTATCATTCCTTCGTGCAATATACTAC

Run BLAST on NCBI

protein sequence of TCONS_00008160-protein

>TCONS_00008160-protein ID=TCONS_00008160-protein|Name=TCONS_00008160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MPGVRRKKSRRNAVIKNLKGMRKRKKLVDPSIGDETLKKHWDKSKTLKQN
MKHLGLAFNSNKSNTSGMSKRKKITKKGMLTQNLLDDNGMVLDVVEEPIN
SAVIDEFSKQAANGKKTERHISPGEAKFFMELIQKHSTNYKAMARDKRNT
YQHTPKQLQRKCEGLLTSSLLPKYKEMYPGILPDDVTTEEMDES

Run BLAST on NCBI

transcript from alignment at sc0000082:271728..275223-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008160 ID=TCONS_00008160|Name=TCONS_00008160|organism=Clytia hemisphaerica|type=transcript|length=3496bp|location=Sequence derived from alignment at sc0000082:271728..275223- (Clytia hemisphaerica)
TTTCAGGGCACAGAAAGAAAAACTAAAATTAAAACAACATGCCTGGTGTA
CNAAATGGATTTAATTTTTCAGGGCACTGAAAGAAAAACTAAAATTTAAA
CAACATGCCTGGTGTACGAAGGAAGAAGTCGCGCAGAAATGCCGTCATCA
AAAACCTCAAAGGAATGAGAAAACGCAAGAAGTTGGTCGACCCGTCTATC
GGAGAGTAAGTCGCAACTTGTTAATAAGCACCTGGTCATGATTTTCTGTT
TATTTTTCTCTAAAAAGGGGCTTGATTTAGTGGTGTGGATTTGCTGCATC
CTCAAGCAAAGGAAAAATAGAGTCTGTCATACATATTACGCCGGGTCAAT
TATCAGCGCTATCCCGTCTATCAAAGCTAAAAGTGTTCCCTGGGGCAGCC
ATGGTGTGCACTGTAGGGTAGGTTGGGTGGTTTTCTGTAACAAAATCTTT
CTTCTTCTTTTCATCCAGTGAAACACTGAAGAAGCATTGGGATAAATCGA
AAACATTGAAACAAAACATGAAACATTTAGGACTCGCCTTCAACTCTAAT
AAATCAAACACTTCTGGAATGAGCAAAAGGAAGAAAATCACCAAAAAAGG
CGTAAGGCGAAAACCTTTTCTTCTTTATAACATATGCTGCAAAAATTAAT
ATCTCTCCACATCTCTCAAGCAAACATACTTGGCCTGATGGCATCGTTAT
TACTCAATTTTGAGAACGCCATCGAACTTATTTTCAGCCTTTTTTCTTAG
TTCAGTTCACATAAGATAATTAATAGTCATTTGATCTAGCGTTGGAACAT
TTTTGACATCCCAAAAAGTTTTCCCTGTGTGACAATTTGCGTCCATTGTT
TTCTCGTTAGATGCTGACGCAAAATTTGTTGGATGATAATGGTATGGTAT
TGGACGTTGTAGAAGAACCAATCAATAGCGCTGTCATTGATGGTAGGATT
CAAATGTTCGACTAGGACCCCCCCCCCTGTTTATTAATTTTTGAAATTTC
AATGACCTTGTATATTTTGACTCTCACCCGCTCGTTTATTAGATGACCTG
GAGAATAAAGAGGGTAAATAAATGAATTTTTAAAGGAAATAGCGTTCTCA
AAAGGTATTGTCATCTTAAAATTCCCAACAACTGATCATTTACAACGTCC
ACCGTTTTGTACCGTAAAGTTTTCTGGGAGATTCTTTAGATCAAGATGAT
ACCATTCTTTTCAAAATTGTGAAATAAGAATTAATCCACCATAACAAAGT
ATTCCACTTTTTTTATAGAATTTTCAAAGCAAGCAGCAAATGGAAAGAAA
ACTGAACGGCATATTTCGCCTGGTGAAGCAAAATTTTTTATGGAGCTCAT
ACAAAAACATTCCACGAACTATAAGGTATAACGAGCAATAAACGTTTCAG
CTCCATGAAAAGGATAAAATATCAAGTAAACCAGGGTGGGCGACAAATTT
TTTTAGGGGTGTCTATGAAAAGCAAAGATAGTCGATGCTCTCTAATTCAA
TTTTCAAGGGGAATGGATTACTATTGTCGTATATTCCCTGCTTGGATACA
CGTAGTTCTATGGTGCTTTTTGAAAATGTGTTCGAAATATGAAAGCTGGA
AAATAGATCAGTTCATAAAGTTTGACTTATAGAGCTTCCTTCTTAGAGAT
TAAGCTTACCTTAAGATAAAGAAAGAAGAAATCTTTTCCTCCCAATTTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTTAAT
TTACATCCATTGCCATAATCATATCTTATATTCTTATATCTCTTCTAATT
TACAGTTCTATGTCCATCCTAAGATGGGTAAAACTACACTACTACTGTTA
CAATTCTTGATATAATTCCAAAAAACCTCAGTTTGAATACATTTTAGCTT
ATTTATAAGTTCTGTTAATTAATATTACAATAAGTGTAGATAATAGTTAT
TGTTCGTGCTAGGTGTGTGTTTGGATCGGATTGGTTTGTAATTGGTTGAT
ATTCTCAAAATAGGGTGCGGTTGTGATAGAATTTTGGCTCTCAGGAGTTC
GCAGGTGATTTCCTTGAGTGGGTATTAATGATGATGAGTTTGTTTTAGAA
TGGGCTCTTCCAGAAAAAATCCGTTCATGGGGGTGGAGGATGAATTGTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTCCA
ATGTCCAGGGGTAATTTTTTGTGTCCACGGGGTTGATTTGATGTTTGTCC
AGGGGTATAACCCGTGTCCAGGGGGTTAAAAATCAAAATGTCCACCCCCC
ACCCATGAACGGATTTTTTCTGGAAGAGCCCAATTAAAACAATCTGTTGT
TGTCCCTCCTTCTTTAAGGTACTTTGCAATAGAAATGTGATCAGTTTGTT
TTCTTGATCAATGATGATTAGGTATTGATTGGTGATAATTAGATAAGGTA
CTTTTCAATAGAAATTAGGTAATCATCTTTTTCAGTATCAGTCCTTTTAC
ACGACACTATCGAATGGTAGAAGGTCGTTTTGAGAGTTTGTTGTTGACGG
AGGCCTTCAAAATATTAGAATACCGGAGCTTATCGAATAGTAGAAGAAGA
ATTTGTAACGTAAACTGTATAAAGGAAACCCTCATGATTCACGCGCCTCC
GCGAAAAAATGAGGGCGCGTCAGGCGCGTGATTCAGCAAGCTCGATTCAA
GGAATTTTCTCCTTCTTTTTAATGGAAACCACAGTAGTAAACAGTTAGTG
TAACATATTTTCTGATAAATTTTCTGAGAACGCCTGGGTGAAACAATTTT
TGTTGTTGTTTATTTGTTTATTGTTTTACGTTAGCCATCCCTCCTCCTCT
AACTTCACATTTCTTCCACTCTCGTTTCAGGCGATGGCCAGAGACAAACG
AAACACGTACCAACACACACCCAAACAACTTCAAAGAAAATGTGAAGGAC
TTTTGACATCTAGTTTGTTGCCTAAGTATAAAGAAATGTATCCAGGAATT
TTACCCGATGACGTCACTACTGAAGAAATGGATGAGTCATAAACCTTTAA
AATAAATATTGCGGTGGCGTGGAGCTTGTTGTAGATATGAAAACGACTCT
GAAAATCGAGAGTGAAGGCAAATTAATCTCATCGATAGACTTGGTTTCAT
TTTTGTCACGTTGAAAATATTACGCATGATAGGGTGAATGTCTTTGTTGA
AGCTCTGAGTGTTGTTAGTTTATCATTCCTTCGTGCAATATACTAC

Coding sequence (CDS) from alignment at sc0000082:271728..275223-

>TCONS_00008160 ID=TCONS_00008160|Name=TCONS_00008160|organism=Clytia hemisphaerica|type=CDS|length=2925bp|location=Sequence derived from alignment at sc0000082:271728..275223- (Clytia hemisphaerica)
GCGATGGCCAGAGACAAACGAAACACGTACCAACACACACCCAAACAACT
TCAAAGAAAATGTGAAGGACTTTTGACATCTAGTTTGTTGCCTAAGTATA
AAGAAATGTATCCAGGAATTTTACCCGATGACGTCACTACTGAAGAAATG
GATGAGTCATAAAATTTTCAAAGCAAGCAGCAAATGGAAAGAAAACTGAA
CGGCATATTTCGCCTGGTGAAGCAAAATTTTTTATGGAGCTCATACAAAA
ACATTCCACGAACTATAAGATGCTGACGCAAAATTTGTTGGATGATAATG
GTATGGTATTGGACGTTGTAGAAGAACCAATCAATAGCGCTGTCATTGAT
GTGAAACACTGAAGAAGCATTGGGATAAATCGAAAACATTGAAACAAAAC
ATGAAACATTTAGGACTCGCCTTCAACTCTAATAAATCAAACACTTCTGG
AATGAGCAAAAGGAAGAAAATCACCAAAAAAGGCATGCCTGGTGTACGAA
GGAAGAAGTCGCGCAGAAATGCCGTCATCAAAAACCTCAAAGGAATGAGA
AAACGCAAGAAGTTGGTCGACCCGTCTATCGGAGAGCGATGGCCAGAGAC
AAACGAAACACGTACCAACACACACCCAAACAACTTCAAAGAAAATGTGA
AGGACTTTTGACATCTAGTTTGTTGCCTAAGTATAAAGAAATGTATCCAG
GAATTTTACCCGATGACGTCACTACTGAAGAAATGGATGAGTCATAAAAT
TTTCAAAGCAAGCAGCAAATGGAAAGAAAACTGAACGGCATATTTCGCCT
GGTGAAGCAAAATTTTTTATGGAGCTCATACAAAAACATTCCACGAACTA
TAAGATGCTGACGCAAAATTTGTTGGATGATAATGGTATGGTATTGGACG
TTGTAGAAGAACCAATCAATAGCGCTGTCATTGATGTGAAACACTGAAGA
AGCATTGGGATAAATCGAAAACATTGAAACAAAACATGAAACATTTAGGA
CTCGCCTTCAACTCTAATAAATCAAACACTTCTGGAATGAGCAAAAGGAA
GAAAATCACCAAAAAAGGCATGCCTGGTGTACGAAGGAAGAAGTCGCGCA
GAAATGCCGTCATCAAAAACCTCAAAGGAATGAGAAAACGCAAGAAGTTG
GTCGACCCGTCTATCGGAGAGCGATGGCCAGAGACAAACGAAACACGTAC
CAACACACACCCAAACAACTTCAAAGAAAATGTGAAGGACTTTTGACATC
TAGTTTGTTGCCTAAGTATAAAGAAATGTATCCAGGAATTTTACCCGATG
ACGTCACTACTGAAGAAATGGATGAGTCATAAAATTTTCAAAGCAAGCAG
CAAATGGAAAGAAAACTGAACGGCATATTTCGCCTGGTGAAGCAAAATTT
TTTATGGAGCTCATACAAAAACATTCCACGAACTATAAGATGCTGACGCA
AAATTTGTTGGATGATAATGGTATGGTATTGGACGTTGTAGAAGAACCAA
TCAATAGCGCTGTCATTGATGTGAAACACTGAAGAAGCATTGGGATAAAT
CGAAAACATTGAAACAAAACATGAAACATTTAGGACTCGCCTTCAACTCT
AATAAATCAAACACTTCTGGAATGAGCAAAAGGAAGAAAATCACCAAAAA
AGGCATGCCTGGTGTACGAAGGAAGAAGTCGCGCAGAAATGCCGTCATCA
AAAACCTCAAAGGAATGAGAAAACGCAAGAAGTTGGTCGACCCGTCTATC
GGAGAGCGATGGCCAGAGACAAACGAAACACGTACCAACACACACCCAAA
CAACTTCAAAGAAAATGTGAAGGACTTTTGACATCTAGTTTGTTGCCTAA
GTATAAAGAAATGTATCCAGGAATTTTACCCGATGACGTCACTACTGAAG
AAATGGATGAGTCATAAAATTTTCAAAGCAAGCAGCAAATGGAAAGAAAA
CTGAACGGCATATTTCGCCTGGTGAAGCAAAATTTTTTATGGAGCTCATA
CAAAAACATTCCACGAACTATAAGATGCTGACGCAAAATTTGTTGGATGA
TAATGGTATGGTATTGGACGTTGTAGAAGAACCAATCAATAGCGCTGTCA
TTGATGTGAAACACTGAAGAAGCATTGGGATAAATCGAAAACATTGAAAC
AAAACATGAAACATTTAGGACTCGCCTTCAACTCTAATAAATCAAACACT
TCTGGAATGAGCAAAAGGAAGAAAATCACCAAAAAAGGCATGCCTGGTGT
ACGAAGGAAGAAGTCGCGCAGAAATGCCGTCATCAAAAACCTCAAAGGAA
TGAGAAAACGCAAGAAGTTGGTCGACCCGTCTATCGGAGAGCGATGGCCA
GAGACAAACGAAACACGTACCAACACACACCCAAACAACTTCAAAGAAAA
TGTGAAGGACTTTTGACATCTAGTTTGTTGCCTAAGTATAAAGAAATGTA
TCCAGGAATTTTACCCGATGACGTCACTACTGAAGAAATGGATGAGTCAT
AAAATTTTCAAAGCAAGCAGCAAATGGAAAGAAAACTGAACGGCATATTT
CGCCTGGTGAAGCAAAATTTTTTATGGAGCTCATACAAAAACATTCCACG
AACTATAAGATGCTGACGCAAAATTTGTTGGATGATAATGGTATGGTATT
GGACGTTGTAGAAGAACCAATCAATAGCGCTGTCATTGATGTGAAACACT
GAAGAAGCATTGGGATAAATCGAAAACATTGAAACAAAACATGAAACATT
TAGGACTCGCCTTCAACTCTAATAAATCAAACACTTCTGGAATGAGCAAA
AGGAAGAAAATCACCAAAAAAGGCATGCCTGGTGTACGAAGGAAGAAGTC
GCGCAGAAATGCCGTCATCAAAAACCTCAAAGGAATGAGAAAACGCAAGA
AGTTGGTCGACCCGTCTATCGGAGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004596	XLOC_004596	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00008160-protein	TCONS_00008160-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000082	supercontig	sc0000082:271728..275223 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
60.3976	57.256	106.884	120.99	142.77	122.319	116.098	111.062	86.7761	72.8179	67.8391	68.0384	47.5231	55.4559	69.4782	73.4337	91.1908	89.6762	22.0335	24.2903	55.8279	58.8241	67.2021	54.7165	68.998	77.8311	38.4767	26.7177	37.8232	37.7146

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR019002	Ribosome_biogenesis_Nop16

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00008160 vs. Swiss-Prot (Human)

BLAST of TCONS_00008160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00008160 (transcript) - C. hemisphaerica