TCONS_00008159 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008159
Unique NameTCONS_00008159
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008159 ID=TCONS_00008159|Name=TCONS_00008159|organism=Clytia hemisphaerica|type=transcript|length=1218bp
AAAGACATCAAAGCAACGGTTGGATGGAACGGTTAACTTGAGTGCTCagt
ttttctgacaaaactgAACGGTCACTAGGAAATACCTATTGTAACGTCGA
AATCTGTTATTCATTATTGGTGTTATTGTGCCAAAACAACAAATCCTGGA
CTGGTAAAGACAAAAGCAAGACAAGGGTTACAATGAAGACTCTTTGCGAA
GCTGAAGAGTACATCCCAAAGATACCTGGCCAACTCGTACTTAACCTCCT
CAACATTGTTTTCACAGTAATTGCCATATTTGGAAATGCACTCATCATTG
TGGCTatcctcaaatcaaaacaacttcGTTCACAGACCTCTATTTATTTC
ATTCTCTCGTTAGCTTTATCTGATTTCTTGGTTGGGCTTGTTGTGCAGCC
TTTGTACAGTTTGGTGTTGATAGACTGGTCATACCACACTTGTCAGATAC
ATCATTATAAATTCGCTATTGCATTTTTCACGTGTTCAGTATCCATTGGA
AACgcgttttgtgtttgttttgatcgcATGTTACGGATCACGAAACCGTT
CCATTATGAAAATTACGTCACAAAGAAACGGGCATTGCTTTTATGTATCA
ATATGTGGTGTATGGGCGTGGCAGTGGGCGTTATGGTTGCTCAACCAGAG
ACAGAGCTCCTAATGGCTTATGGGGCACCAGTAGAAATGTTGATCTCCTT
TATCATCTGCATATACTGTGCTGTCCAGATCTATAAAGTAGGACAAGAAC
AGATTGAACGCATCACAAAATCCAATGGTTCtgattcaaaacaaagaaag
aagaagCAAGTACTAATGGAACGAAAATTATCGAGCTCTCTAGTTTCCGT
TCTAGCAACTATTGTCATTTGTTGGGGACCTTTCGCGATTGTTAATCTCA
TCCAACAATATACAGACGATGATAGTGAGCAATGGATACTTCTTTTTAAA
GTTCGCTTATGGACAGTCCTGTTCGGATACTCTAAAAGCACAATCAATAT
TTTCATCTTTGGGTTGACGCATCGTGATATAAAGACAGCTATACGTAACA
TCTTGACCCTCCAGGATTCCAAACGATCCAATTTAGAACTAAGGCCAATG
AATAGTGTAAATAGTTATGGATCAACCAAGCAACAATGGACACCTGAGAT
GGGAAAGAAAAATAACGCACTCGAATTGCCCTGAAATAAAAGCTGACAAT
ATTTAGTTGATACAGTGG
Run BLAST on NCBI

protein sequence of TCONS_00008159-protein

>TCONS_00008159-protein ID=TCONS_00008159-protein|Name=TCONS_00008159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MKTLCEAEEYIPKIPGQLVLNLLNIVFTVIAIFGNALIIVAILKSKQLRS
QTSIYFILSLALSDFLVGLVVQPLYSLVLIDWSYHTCQIHHYKFAIAFFT
CSVSIGNAFCVCFDRMLRITKPFHYENYVTKKRALLLCINMWCMGVAVGV
MVAQPETELLMAYGAPVEMLISFIICIYCAVQIYKVGQEQIERITKSNGS
DSKQRKKKQVLMERKLSSSLVSVLATIVICWGPFAIVNLIQQYTDDDSEQ
WILLFKVRLWTVLFGYSKSTINIFIFGLTHRDIKTAIRNILTLQDSKRSN
LELRPMNSVNSYGSTKQQWTPEMGKKNNALELP
Run BLAST on NCBI

transcript from alignment at sc0000082:263653..264932-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008159 ID=TCONS_00008159|Name=TCONS_00008159|organism=Clytia hemisphaerica|type=transcript|length=1280bp|location=Sequence derived from alignment at sc0000082:263653..264932- (Clytia hemisphaerica)
AAAGACATCAAAGCAACGGTTGGATGGAACGGTTAACTTGAGTGCTCAGT
TTTTCTGACAAAACTGAACGGTCACTAGGAAATACCTATTGTAACGTCGA
AATCTGTTATTCATTATTGGTGTTATTGTGCCAAAACAACAAATCCTGGA
CTGGTAAAGACAAAAGCAAGACAAGGGTTACAATGAAGACTCTTTGCGAA
GCTGAAGAGTACATCCCAAAGATACCTGGCCAACTCGTACTTAACCTCCT
CAACATTGTTTTCACAGTAATTGCCATATTTGGAAATGCACTCATCATTG
TGGCTATCCTCAAATCAAAACAACTTCGTTCACAGACCTCTATTTATTTC
ATTCTCTCGTTAGCTTTATCTGATTTCTTGGTTGGGCTTGTTGTGCAGCC
TTTGTACAGTTTGGTGTTGATAGACTGGTCATACCACACTTGTCAGATAC
ATCATTATAAATTCGCTATTGCATTTTTCACGTGTTCAGTATCCATTGGA
AACGCGTTTTGTGTTTGTTTTGATCGCATGTTACGGATCACGAAACCGTT
CCATTATGAAAATTACGTCACAAAGAAACGGGCATTGCTTTTATGTATCA
ATATGTGGTGTATGGGCGTGGCAGTGGGCGTTATGGTTGCTCAACCAGAG
ACAGAGCTCCTAATGGCTTATGGGGCACCAGTAGAAATGTTGATCTCCTT
TATCATCTGCATATACTGTGCTGTCCAGATCTATAAAGTAGGACAAGAAC
AGATTGAACGCATCACAAAATCCAATGGTTCTGATTCAAAACAAAGAAAG
AAGAAGCAAGTACTAATGGAACGAAAATTATCGAGCTCTCTAGTTTCCGT
TCTAGCAACTATTGTCATTTGTTGGGGACCTTTCGCGATTGTTAATCTCA
TCCAACAATATACAGACGATGATAGTGAGCAATGGATACTTCTTTTTAAA
GTTCGCTTATGGACAGTCCTGTTCGGATACTCTAAAAGCACAATCAATAT
TTTCATCTTTGGGTTGACGCATCGTGATATAAAGACAGCTATACGTAACA
TCTTGACCCTCCAGGATTCAAAACGATCCAATTTAGAACTAAGANGACAG
CTATACGTAACATCTTGACCCTCCAGGATTCCAAACGATCCAATTTAGAA
CTAAGGCCAATGAATAGTGTAAATAGTTATGGATCAACCAAGCAACAATG
GACACCTGAGATGGGAAAGAAAAATAACGCACTCGAATTGCCCTGAAATA
AAAGCTGACAATATTTAGTTGATACAGTGG

Coding sequence (CDS) from alignment at sc0000082:263653..264932-

>TCONS_00008159 ID=TCONS_00008159|Name=TCONS_00008159|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at sc0000082:263653..264932- (Clytia hemisphaerica)
ATCTTGACCCTCCAGGATTCCAAACGATCCAATTTAGAACTAAGGCCAAT
GAATAGTGTAAATAGTTATGGATCAACCAAGCAACAATGGACACCTGAGA
TGGGAAAGAAAAATAACGCACTCGAATTGCCCTGAATGAAGACTCTTTGC
GAAGCTGAAGAGTACATCCCAAAGATACCTGGCCAACTCGTACTTAACCT
CCTCAACATTGTTTTCACAGTAATTGCCATATTTGGAAATGCACTCATCA
TTGTGGCTATCCTCAAATCAAAACAACTTCGTTCACAGACCTCTATTTAT
TTCATTCTCTCGTTAGCTTTATCTGATTTCTTGGTTGGGCTTGTTGTGCA
GCCTTTGTACAGTTTGGTGTTGATAGACTGGTCATACCACACTTGTCAGA
TACATCATTATAAATTCGCTATTGCATTTTTCACGTGTTCAGTATCCATT
GGAAACGCGTTTTGTGTTTGTTTTGATCGCATGTTACGGATCACGAAACC
GTTCCATTATGAAAATTACGTCACAAAGAAACGGGCATTGCTTTTATGTA
TCAATATGTGGTGTATGGGCGTGGCAGTGGGCGTTATGGTTGCTCAACCA
GAGACAGAGCTCCTAATGGCTTATGGGGCACCAGTAGAAATGTTGATCTC
CTTTATCATCTGCATATACTGTGCTGTCCAGATCTATAAAGTAGGACAAG
AACAGATTGAACGCATCACAAAATCCAATGGTTCTGATTCAAAACAAAGA
AAGAAGAAGCAAGTACTAATGGAACGAAAATTATCGAGCTCTCTAGTTTC
CGTTCTAGCAACTATTGTCATTTGTTGGGGACCTTTCGCGATTGTTAATC
TCATCCAACAATATACAGACGATGATAGTGAGCAATGGATACTTCTTTTT
AAAGTTCGCTTATGGACAGTCCTGTTCGGATACTCTAAAAGCACAATCAA
TATTTTCATCTTTGGGTTGACGCATCGTGATATAAAGACAGCTATACGTA
ACATCTTGACCCTCCAGGATTCCAAACGATCCAATTTAGAACTAAGGCCA
ATGAATAGTGTAAATAGTTATGGATCAACCAAGCAACAATGGACACCTGA
GATGGGAAAGAAAAATAACGCACTCGAATTGCCCTGAATGAAGACTCTTT
GCGAAGCTGAAGAGTACATCCCAAAGATACCTGGCCAACTCGTACTTAAC
CTCCTCAACATTGTTTTCACAGTAATTGCCATATTTGGAAATGCACTCAT
CATTGTGGCTATCCTCAAATCAAAACAACTTCGTTCACAGACCTCTATTT
ATTTCATTCTCTCGTTAGCTTTATCTGATTTCTTGGTTGGGCTTGTTGTG
CAGCCTTTGTACAGTTTGGTGTTGATAGACTGGTCATACCACACTTGTCA
GATACATCATTATAAATTCGCTATTGCATTTTTCACGTGTTCAGTATCCA
TTGGAAACGCGTTTTGTGTTTGTTTTGATCGCATGTTACGGATCACGAAA
CCGTTCCATTATGAAAATTACGTCACAAAGAAACGGGCATTGCTTTTATG
TATCAATATGTGGTGTATGGGCGTGGCAGTGGGCGTTATGGTTGCTCAAC
CAGAGACAGAGCTCCTAATGGCTTATGGGGCACCAGTAGAAATGTTGATC
TCCTTTATCATCTGCATATACTGTGCTGTCCAGATCTATAAAGTAGGACA
AGAACAGATTGAACGCATCACAAAATCCAATGGTTCTGATTCAAAACAAA
GAAAGAAGAAGCAAGTACTAATGGAACGAAAATTATCGAGCTCTCTAGTT
TCCGTTCTAGCAACTATTGTCATTTGTTGGGGACCTTTCGCGATTGTTAA
TCTCATCCAACAATATACAGACGATGATAGTGAGCAATGGATACTTCTTT
TTAAAGTTCGCTTATGGACAGTCCTGTTCGGATACTCTAAAAGCACAATC
AATATTTTCATCTTTGGGTTGACGCATCGTGATATAAAGACAGCTATACG
TAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004595XLOC_004595Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008159-proteinTCONS_00008159-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008159-exon-sc0000082-1575043694:263884..264932TCONS_00008159-exon-sc0000082-1575043694:263884..264932Clytia hemisphaericaexon
TCONS_00008159-exon-sc0000082-1575043694:263653..263821TCONS_00008159-exon-sc0000082-1575043694:263653..263821Clytia hemisphaericaexon
TCONS_00008159-exon-sc0000082-1510915933:263884..264932TCONS_00008159-exon-sc0000082-1510915933:263884..264932Clytia hemisphaericaexon
TCONS_00008159-exon-sc0000082-1510915933:263653..263821TCONS_00008159-exon-sc0000082-1510915933:263653..263821Clytia hemisphaericaexon
TCONS_00008159-exon-sc0000082-1491911889:263884..264932TCONS_00008159-exon-sc0000082-1491911889:263884..264932Clytia hemisphaericaexon
TCONS_00008159-exon-sc0000082-1491911889:263653..263821TCONS_00008159-exon-sc0000082-1491911889:263653..263821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:263653..264932 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0403029	0.0534648	0.255002	0.236599	0.607914	0.126165	0	0.0784025	0.0289108	0.405253	0.0920418	0.0696438	0.0229244	0.0883351	0.114876	0.418566	0.457362	0.0892878	0.0679111	0.0847547	0	0.0410379	0.0717448	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
[Close]
BLAST of TCONS_00008159 vs. Swiss-Prot (Human)
Match: ADRB2 (Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB2 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 5.802e-19
Identity = 95/363 (26.17%), Postives = 167/363 (46.01%), Query Frame = 3 
Query:  249 LNIVFTVIA---IFGNALIIVAILKSKQLRSQTSIYFILSLALSDFLVGLVVQPLYS--LVLIDWSYHT--CQIHHYKFAIAFFTCSVSIGNAFCVCFDRMLRITKPFHYENYVTKKRALLLCINMWCMGVAVGVMVAQ------PETELLMAYG-------------APVEMLISF----IICIYCAVQIYKVGQEQIERITKSNG-----------SDSK-----QRKKKQVLMERKLSSSLVSVLATIVICWGPFAIVNLIQQYTDD--DSEQWILLFKVRLWTVLFGYSKSTINIFIFGLTHRDIKTAIRNILTLQDSKRSNLELRPMNSVNSYGSTKQQ--WTPEMGKKNNAL--ELP 1181
            + IV ++I    +FGN L+I AI K ++L++ T+ YFI SLA +D ++GL V P  +  +++  W++    C+   +  +I     + SI     +  DR   IT PF Y++ +TK +A ++ + +W +      +  Q         E +  Y              A    ++SF    +I ++   ++++  + Q+++I KS G            D +     +R  K  L E K   +L  ++ T  +CW PF IVN++    D+    E +ILL  +       GY  S  N  I+     D + A + +L L   +RS+L+    N  +S G+T +Q  +  E  K+N  L  +LP
Sbjct:   36 MGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTN-YFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCE---FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWI-------GYVNSGFNPLIY-CRSPDFRIAFQELLCL---RRSSLKAYG-NGYSSNGNTGEQSGYHVEQEKENKLLCEDLP 382
The following BLAST results are available for this feature:
BLAST of TCONS_00008159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADRB25.802e-1926.17Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB... [more]
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