TCONS_00008153 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008153
Unique NameTCONS_00008153
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008153 ID=TCONS_00008153|Name=TCONS_00008153|organism=Clytia hemisphaerica|type=transcript|length=2486bp
GCAGCTTTACTATATCTGGTTTCAATACTACGAGTGTGAATGGCCAGCTT
GGCTAATCGGACTCTACGGCTTTTAAATTAGCAACCATGCTTTTACGCAC
TGGCCGATGGCGAAATTGCAGGGGAGGAACACAATAATAATTTCAATACC
TTTGTAAACGAGGAACAGGTTCGCCAACCGTTATCATCAACAATGATAAC
ACATCTGTGTACATCATGGCAGGAGCAGCAGCAGGAATTATGGAACATTG
TCTCATGTATCCTGTAGATAGTATAAAGACTCGACTGCAAAGTTTGCGTC
CGCATCCAAAAGCAGCTTACAAAGGTGTTAGTGATGCATTCCGTCAGATC
ACAAAAAATGAAGGCATATTGCGACCATTACGTGGAATTAACATTGTGGC
ACTAGGAGCTGGACCGTCACATGCACTGTACTTTTGCAGCTatgaaatga
tgaaaagtaaattGAATGGTAAAGGAAATACCCATGTGACAAATGCATTA
TCTGGAGTGGTTGCGACACTTTTTCACGATGGGCTTATGAATCCAGTTGA
AGTTGTCAAGCAAAGACTTCAGGTGTATGACAGCCCATACAGAGGAGTTT
TCCATTGTGCTACTCAGATCCTTAAAACTGAAGGAATAACTGCTTTCTAT
CGAAGTTTCACAACCCAAGTCACAATGAACATCCCATTTCACTCAACACA
TTTCGTTACTTATGAATTTATGAGAGAACGTTTAAATCCAGAAGGAGGAT
ACAATCCACGTGCGCATCTTCTTGCTGGTGCGACAGCTGGTGGTGTAGCG
GCCGCGGTCACAACGCCATTAGATGTTGCTAAGACATTGTTGAACACTCA
AGAAAAAAGTGTTATTTTGAACTCTTCAATTAAAAAGATTCCCGCTAAAC
GACGACTTGTGGTAACTGGAATGTTCAATGCTTTAAAAACTATTTATGTG
ATGAGAGGTATAAAGGGATACATTCGAGGAATGAAAGCTCGTGTTATTTA
CCAAATGCCATCTTGTGCTATATCTTGGAGTGTTTACGAATTCTTCAAGC
ATTACCTATCACTCTCCATATCTGACGAAGAGATGATGGACCTGACAGTG
TGAAGTGTTGAAGTGTTTGTGGTGATGGATAAAACCGCACTGTTTACAAT
TATGCTTCACTAATGCAGCCCTTCTAAGCTGTTGGGAGACCAGTCCCATT
CCATCAGCTCTCATGGTACAACAAGCATATTGCCTACCATCTCACCAATT
CGGAAATACTGCTTTCGCGAGGCAAGGAGCCCCCACCAGTATGAATTGGT
TAATCAATCAGTCAATCCCTATGAAACGTTAAAGTGAAAATCAGTTTGTA
TATTTTTACCACTGGACGCGTCTTgttgattatgtcaaaaagatgTGCTT
TTGCGCAGACCTGGTGTCGCCATAAGCACACTTTGAATCGCTGGTTCGTT
tcaaagaagaatttttttatctgaatcATGATCATGATACATAATGTTTG
CACAACTAGAAGTTGTCACTGACCTTGTATCAATGAGAACATTGTCGCTG
TATCAGTGTATTCATTTTTCCAGGTGTGCACTAGCCCTTGTgttggatta
attttcacgtTTCTCGCTATCTTTCCCTTGCCACCTCAAATTAATTCCAA
AACCATTCCCCTTCCCTCCTTTCAAactttaacaaaatttttgctaaaCA
ATAAACGCTCTTTTTCTAACACGGCCAGTGCACACTTGGTTTAATAATAT
ACTGGGATGTCAGCATAATGAAAAACccaaagaaattaaaatgtGTCAAT
AATCGTGCTTTTGCGCGTTCAAATATCGCCATCAGTACTTTTTTAACACG
ATGTTCGCAATATTATATTTTGTATCAAATCACTTGTGGAAAATTTTGTG
TATAgttgttcaattttcttctctttttttcagttttacaAATTTGTTCA
TGGGTGTTTTTTATGCCGGCTCTATTTCTTGAGTGTAAGTAAGTGTCGGC
TTTTGGTAGTGAAATGTTtataaaagtttatttgaaagcttcGTTTGTTT
CCCGCGAGGATTCTCATTTCTTATTCTCCATTATTAAATTGTTCACATTT
AAGTCGagaattcgaatatttctcGTTCTTTGAAGTAGTGGCCTATGCAA
GAGCCAGTTTACATGGTTGATCTCAGACCTGAGGTTGACTTGTTGCAACA
CAATTGACTGTTTTGGGGCTTTCATTGATCTATGTTCTGAGATTTTGGAT
CTGTCATTCGCTCGTTTCGAACAGAGTCTGGATTTTGAAAAGTCAAACTC
GCTATGGTCTGAGAACATCCATGTAAATAGGCTCTAACACTTGATGTTTT
TCATCTTGAATTTTGTAGTGGTAATATTCGTGCAAAACTTTGACGTTTAG
ATATTTGTAATCATATTTTGTTATCTTACATGTATTTTATGCGAAGATAT
CGTTGGTAAAAAAAGTGCAATTCGGAAACTGTCTTT
Run BLAST on NCBI

protein sequence of TCONS_00008153-protein

>TCONS_00008153-protein ID=TCONS_00008153-protein|Name=TCONS_00008153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MAGAAAGIMEHCLMYPVDSIKTRLQSLRPHPKAAYKGVSDAFRQITKNEG
ILRPLRGINIVALGAGPSHALYFCSYEMMKSKLNGKGNTHVTNALSGVVA
TLFHDGLMNPVEVVKQRLQVYDSPYRGVFHCATQILKTEGITAFYRSFTT
QVTMNIPFHSTHFVTYEFMRERLNPEGGYNPRAHLLAGATAGGVAAAVTT
PLDVAKTLLNTQEKSVILNSSIKKIPAKRRLVVTGMFNALKTIYVMRGIK
GYIRGMKARVIYQMPSCAISWSVYEFFKHYLSLSISDEEMMDLTV
Run BLAST on NCBI

transcript from alignment at sc0000082:192139..200091-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008153 ID=TCONS_00008153|Name=TCONS_00008153|organism=Clytia hemisphaerica|type=transcript|length=7953bp|location=Sequence derived from alignment at sc0000082:192139..200091- (Clytia hemisphaerica)
GCAGCTTTACTATATCTGGTTTCAATACTACGAGTGTGAATGGCCAGCTT
GGCTAATCGGACTCTACGGCTTTTAAATTAGCAACCATGCTTTTACGCAC
TGGCCGATGGCGAAATTGCAGGGGAGGAACACAATAATAATTTCAATACC
TTTGTAAACGAGGAACAGGTATATTGCTGACTCATCCATACAAAACTGAT
TATCACTTTTTGTTGAAATATTTGGATTGACTGAGATTCTCATCCAACTG
CTGACCGAACTTATATGATGATATATTGAAAATGTCTCAACAACACATTG
AAAAGCTTAGAGTTGCTGCAAATTTGAATTCACAACACAAACAAGTTGTT
ATTAATACATCTTGTATGCAACAACAGAATCCTCTTCCATCCATGAACTT
CTCTTCCAACATTTCAACAGAAAATATGTCTGAAAATTTACCAACTTCAT
CTCCTGAAGGTTCGCCAACCGTTATCATCAACAATGATAACACATCTGTG
TACATCATGGCAGGAGCAGCAGCAGGAATTATGGAACATTGTCTCATGTA
TCCTGTAGATAGTATAAAGGTATATATCCTAACATTCAATAATTTGTCTC
TCAGGGGAAGGATAAGGCGGCCGTCACAAATATCTTCATTTCGCGTCCTC
GTTGGGTCGAAAAAGTGAGTCGGTCGGTCGGTCGGTCGGTCGGTCGTAAA
AATGTTCAGGTTTTCTTAAAATTGGACCCAGTGAATTTCTTCTTCTCGTC
CGACCTTAATCATCCATTTTTTTGGAGTGTATTCTTGAAGGAAACTGCCT
GCCAGCAGCCAAAACGACCGCGCGTTAAGGGTGGTTTCAAATTATGACCT
TTGAACACTGTAATGATAAACAAAGTCAAAATGCCGCGAATGCGCTAGAA
ATCGCTCGCAAAAAATCAGCAATAATAAAATTTTTGAACGAACGAAACGT
CATCGACAGAAAAAGTCCGACAAATTTACCGACTCACCAATCGATTTCGA
TTGACTTCGATCGACTACGATTGACTTTGATCGACTTCGATTGACTTCGA
TTGATCGAATACAGTACGATTGACTTCGATCGACTACGAATGACTTCGAG
CGATCGACTGCATCGTCGATATTAAACGATCACTTTCGATCAGAGAGAAT
CAAACCCACAAAAACTTAGCACTTTACGGTGCGAGGGTATGAGATTGGCG
TTACCGTAAACCCAGATGACTTCGGCCACCCTCTGTTAACTTCGGCAATC
GAATTTTTCGATTGACATCCCCTGGTACCGTGAGATCGGGTAACTTGCAT
CAGTGGAGGCTAACATGCATAGCCCTCAAATGAAAGACCTGGCTGGTCAT
TAAAATACAAAGTTAAATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGAGCA
GAGCTGCGTAGTTGTATTTTAATGACCAGACAGGTCATTCATTTGAGGGC
TATGTATGTTAGCCTCCACTGATGCAAGTTACCTGATCTCACGATAGATA
GCAAATAATGTGAATACGCTACTCTCACCAGGTAGGCTTTCACACCACAG
AAGGAACAAATCTTTGCGACGAGAAATGTGTAAATGCGATCACGCGCACT
CATGCAAGCGTCCAAACACAGATAAAAAAAGTTCGTTCTTCAGTGGAAAA
TTGTGAGATCTGTTATCGAAACTCGATACAATCAATCACGCACGCTGGAA
AAGTCTCTAGAGAAAAACAACACACAAAAAATGACGTCAAGATGTGAGCA
GCGTGAGTGTGATTAAATTGTTAATTACTTCTTCAAATTAGTACTTTTAA
AATGCTTAAAAAATACATTTGGTTGTGATTATGAGATGGTCAAAGTTTGA
TTGATAAACTTGGTTGAAGTATCAAAACAAACTTGTTGTCAAAGAGATTT
AAATAAAACAGTAAGTGAAAATACAGTCCAGAAATCAACCGTCCCAAGAT
TTGACCAATCGTCACAAGTTAGAGCAGTTGATGGTACTATCTCTTTCAAA
GCAATACTATCTTTTTTGAAATGACACTATCTTTGTTAAAATGATACTGT
GAGATCGGGTAACTTGCATCAGTGGAGGGAAACTTGCATAGCCCATGAAA
TGAATGATAAAATAGAAAGTTAAATCANTGGGCAACTTGCATCAGTGGAA
GGAAACTTGCATAGCCCATGAAATGAATGATAAAATAGAAAGTTAAATCA
AAACAAACCTGATTGACAAAATTTGCGGGTTGTAAGATGTATCTCCTCTA
AGTCCTAATCATAAAAGTGATGTCATGCATAATTATGTTTGACATCATTA
TTAAATTTGAGATTACACGTCCAGTGGCCATTCCAAATCTCAAAGTCTGC
ATACAAAATCTTCAAAGTTTGACTCTAGTCCTCCCCTGGGTGGCTTATCT
TTTAACCATATTTGGATTGTGTACTGTCCCCGTGACTTAATTTTTTGTTT
TTAAATCTGCAAGTAGATTTTTGTCTCGCTTCGCTCTCGGTAAATATGCC
ATCCAGGAAAAAGCGGGAGAGAAAGCCACAAAGAATATTGCAACTCTATG
TTTTTATCAGATTAAAAAAAATAATAAGACAATACTAAATTGCTTTTTTT
TTACCCTTACCATATCTGGCCATATCTAACTTTTCGAATTTAGATATGCA
AAATGTCATACACACTTTTTAACAGTAACGACGACTCAAATGTTTTTATA
TGAAGAAACAGGTGGACTATTTTTTGTATTTTTTTCTCTTGCTTTTTATC
GCCCTTTGAATGCTGTTGTTATTCTACAAACTTTTTTATTTTTATGTTTT
GATTTACCTCTGAAATGTTCTTTTCTATAAAAGGAATTTGTTTTGTTTTG
AAAAGAATTCGAATGCCATTAATAAATACGATCGTTAATCACATTAGAAA
ACATGTAAAACAAAAGAAAAGAGAAAAACCTTTGGTGGGCAAGCCTGGGC
AGAAATTAAAATTACTAAATGCAGATGGGCCTTAAATTTCAAAACAAAGG
CTGAATAAAGTCTAAACCAGGATCNGCCTGGGCAGAAATTAAAATTACTA
AATGCAGATGGGCCTTAAATTTCAAAACAAAGGCTAATAAAGTCTAAACC
AGGCTCTATCCGATTTATCAATCAAAACAAACTTATCTTTATCGAGAATA
AAAACATTGCTTGCGAAAACGAAAGTGACACACATAAAACAGACATACAG
ACTACGGCTATTAATATATAGATAATAAATGATTTAAAGGGAATGGATTG
GAGTTTCCAGTGTCGAATAACGTAACGTTTCTGAATTCATTGCATTGAAT
TGCTTGAAAAAAGTTTATTTGACCCTAGTAAACTGGAGCCCGCTGTTTTC
TTTACCTGTGTTTCTATCGAGGCCCGGAATCTTTGAGCTAGCTAAATTAT
GACGTCATAAAAGTGCAAATTATGACGTCACTCAACTCTAACTCAATTTT
TTCATTTCCAAAAAAGATTTTTCAAGCTAGAATTAACTCGATTTTTTTTT
TCGCAAAAAGTTTTTTAGGTTTTTTAAGTTTCCGACAAGGAAACAAAGTG
AAAAATCAATTTTGAATATTGGGCTCGTTTTAAAGCTTTTAAATGCTGTT
TGGGCAATACCTAAAGTAAAGAAAGAGCCAAATTCTGATATGAATCCTTT
TGAATATTTGGCTCTTTAAAGCTTTTAATGCTGTTTGGGCAATACCTAAA
GTAAAGATTGAGAGCCAAATTCTGATATGAATCCTTTTGAATATCTGGTT
GTTTTAAAGCTTTTAATGCTGTTTGGGCAATACCTAAAGTAAATATTGAG
AGCCAAATTCTGATATGAATCCATATATAAACATCAGAATTGATAAACTG
GCTCCAAAAATATGAGCTCTTTCCATTATGCCTGGAAAGGCTTGTGATGA
CATCATCAAAAAACTTTAAACCCTCATAACTTTTGATAGGTAAATTTTCA
TGGCATGTTTATACCTCAATTTCCATCAGAATTTCTATCATGCCCTTTCC
GATGGAACCATCAGATTTTGGAAATTTTCTAAAAAATTATTTTTTCGCCC
AACCTAATTAAGTAAGTGTGTCTGCTTAAAATTAAGTTTAACAACCCCTA
AGGGTCATCTGTGCCAAAATTTTAGCCTTTTATCACCATCTGAAGTATTG
TAGCATTATATATTATGTGCTGACAGACCTAACTGACAAGGCAAATGCTG
CGGTATAAGCTGCTGTAATTTAAATTATAGAAAATAACAACTTAAAAAGC
CATTTCTGTTTTGATTATGGACCCATCATGATATTTTGTAGTTACTGTGA
TAAGGATGAACCTTGTTGTGTTTTGTCTAATGTCGACTAGCCCAGGGTCC
ACTTAAAGCTTTTTTTATAGACTGGATGACGCGATTAAGTGGCCCGGTAG
TATATAGTAATTTGCTTTTGCTTAGAATTAAGTTATTTTTTGAAGGTAAA
AACAGTATGAAGCAATGTTTTTATTTGAGAATAAGGGATTGCAATTCTGT
TAATCGTGTTTGTTTCTCATTTTTGATTATATCTTTCAACTCCAAGTAGT
TTTATTGTTATTTGGATTTTTAACATTTTTTTTCAAAATGGCAACCTCGC
CAAATGCTCCTAGTCTACTTCACTGGACTCAGCGTCATAAAAAATTATCA
AAAAGCAAAGTTCAGCCAAAAGTAGACTCTAGTCTAAATGTCGACTAATG
ATTCTCTTCATAATAAAGAGGGGGTATTTCAAGAGGCTTTGCAAGTTTTG
AAATACAACTTTGAACGACCCTTGTAAAACTTTTTTGATAGATGCTTAAA
TGAATATCAGGTCTTATAGTTTGCAGATATTGTGTAATGTTTACATTCAA
AACTTTTATTTGTTTTACACAAAACATGACATTTGACACCGAAGCAGAAA
GCTTTAAAAATGAATTTCCAAAGAAAGTCCTGCTGTAAACACAAAGTATT
TTTGAAACTGTTTATTTTAGACGAGTATCCTTTTTTACGTGATTTTATTA
AATCCTTTTAGACTCGACTGCAAAGTTTGCGTCCGCATCCAAAAGCAGCT
TACAAAGGTGTTAGTGATGCATTCCGTCAGATCACAAAAAATGAAGGCAT
ATTGCGACCATTACGTGGAATTAACATTGTGGCACTAGGAGCTGGACCGT
CACATGCACTGTACTTTTGCAGCTATGAAATGATGAAAAGTAAATTGAAT
GGTAAAGGAAATACCCATGTGACAAATGGTAAGGTCCAGTAACATCGTTA
TGTTCTTGTTTTCTATACTTATAAGCTACACACTCAAGATGAGAGAACTG
TAAGCTTCGATAATATCGCATAAAGTTATGAAATTGTTAAAACAGAATTC
TTATCTAAACAATGCTTTTAGGCATGGTGAAACCGCTTTTTAACAAGAAA
CACTGCTATAGAAAATATTCCTTCATTTTCAGCATTATCTGGAGTGGTTG
CGACACTTTTTCACGATGGGCTTATGAATCCAGTTGAAGGTGAGTTGTGT
TGCTTTTTATTTTGAGTCAACAACTTTGAAAATAAACTAAACCAAGACAA
TCCTCTCTTGTGTTTACAAGTTTAAAACTTAGCAAAATGTGGTCGGGTAA
ATAAATTATACTTTTATTTATTTTTTAGAGCAGTCTATTTGAGTAATCCA
AATTAAGAGTTTATGTGTTTTTCAATGATCAATATGGACTTATTGCATAT
AGTTGCTTAACAATTTGAAGAACCATGTGCCTTACATTTCATCATTTTAA
GATTTAATTTGTTGCAACATTTATGACGCTAAATCATATCTCATGTTAAC
TATCAAACCATATTGTTATTATCTATAATAGATAAGATCCTCAGATTAGA
ATATTTTTTTAACTTCAAATAACCAAACAAAGAGTCCATTAATGCTTATA
AAAACTCCATAAATCGTTTTTTGGCGTCAGACCGAAAGTTTTGAAATAAA
ACTTGTATTCTTGTTTCAGTTGTCAAGCAAAGACTTCAGGTGTATGACAG
CCCATACAGAGGAGTTTTCCATTGTGCTACTCAGATCCTTAAAACTGAAG
GAATAACTGCTTTCTATCGAAGTTTCACAACCCAAGTCACAATGAACATC
CCATTTCACTCAACACATTTCGTTACTTATGAATTTATGAGAGAACGTTT
AAATCCAGAAGGAGGATACAATCCACGTGCGCATCTTCTTGCTGGTGCGA
CAGCTGGTGGTGTAGCGGCCGCGGTCACAACGCCATTAGATGTTGCTAAG
ACATTGTTGAACACTCAAGAAAAAAGTGTTATTTTGAACTCTTCAATTAA
AAAGATTCCCGCTAAACGACGACTTGTGGTAACTGGAATGTTCAATGCTT
TAAAAACTATTTATGTGATGAGAGGTATAAAGGGATACATTCGAGGAATG
AAAGCTCGTGTTATTTACCAAATGCCATCTTGTGCTATATCTTGGAGTGT
TTACGAATTCTTCAAGCATTACCTATCACTCTCCATATCTGACGAAGAGA
TGATGGACCTGACAGTGTGAAGTGTTGAAGTGTTTGTGGTGATGGATAAA
ACCGCACTGTTTACAATTATGCTTCACTAATGCAGCCCTTCTAAGCTGTT
GGGAGACCAGTCCCATTCCATCAGCTCTCATGGTACAACAAGCATATTGC
CTACCATCTCACCAATTCGGAAATACTGCTTTCGCGAGGCAAGGAGCCCC
CACCAGTATGAATTGGTTAATCAATCAGTCAATCCCTATGAAACGTTAAA
GTGAAAATCAGTTTGTATATTTTTACCACTGGACGCGTCTTGTTGATTAT
GTCAAAAAGATGTGCTTTTGCGCAGACCTGGTGTCGCCATAAGCACACTT
TGAATCGCTGGTTCGTTTCAAAGAAGAATTTTTTTATCTGAATCATGATC
ATGATACATAATGTTTGCACAACTAGAAGTTGTCACTGACCTTGTATCAA
TGAGAACATTGTCGCTGTATCAGTGTATTCATTTTTCCAGGTGTGCACTA
GCCCTTGTGTTGGATTAATTTTCACGTTTCTCGCTATCTTTCCCTTGCCA
CCTCAAATTAATTCCAAAACCATTCCCCTTCCCTCCTTTCAAACTTTAAC
AAAATTTTTGCTAAACAATAAACGCTCTTTTTCTAACACGGCCAGTGCAC
ACTTGGTTTAATAATATACTGGGATGTCAGCATAATGAAAAACCCAAAGA
AATTAAAATGTGTCAATAATCGTGCTTTTGCGCGTTCAAATATCGCCATC
AGTACTTTTTTAACACGATGTTCGCAATATTATATTTTGTATCAAATCAC
TTGTGGAAAATTTTGTGTATAGTTGTTCAATTTTCTTCTCTTTTTTTCAG
TTTTACAAATTTGTTCATGGGTGTTTTTTATGCCGGCTCTATTTCTTGAG
TGTAAGTAAGTGTCGGCTTTTGGTAGTGAAATGTTTATAAAAGTTTATTT
GAAAGCTTCGTTTGTTTCCCGCGAGGATTCTCATTTCTTATTCTCCATTA
TTAAATTGTTCACATTTAAGTCGAGAATTCGAATATTTCTCGTTCTTTGA
AGTAGTGGCCTATGCAAGAGCCAGTTTACATGGTTGATCTCAGACCTGAG
GTTGACTTGTTGCAACACAATTGACTGTTTTGGGGCTTTCATTGATCTAT
GTTCTGAGATTTTGGATCTGTCATTCGCTCGTTTCGAACAGAGTCTGGAT
TTTGAAAAGTCAAACTCGCTATGGTCTGAGAACATCCATGTAAATAGGCT
CTAACACTTGATGTTTTTCATCTTGAATTTTGTAGTGGTAATATTCGTGC
AAAACTTTGACGTTTAGATATTTGTAATCATATTTTGTTATCTTACATGT
ATTTTATGCGAAGATATCGTTGGTAAAAAAAGTGCAATTCGGAAACTGTC
TTT

Coding sequence (CDS) from alignment at sc0000082:192139..200091-

>TCONS_00008153 ID=TCONS_00008153|Name=TCONS_00008153|organism=Clytia hemisphaerica|type=CDS|length=3552bp|location=Sequence derived from alignment at sc0000082:192139..200091- (Clytia hemisphaerica)
TTGTCAAGCAAAGACTTCAGGTGTATGACAGCCCATACAGAGGAGTTTTC
CATTGTGCTACTCAGATCCTTAAAACTGAAGGAATAACTGCTTTCTATCG
AAGTTTCACAACCCAAGTCACAATGAACATCCCATTTCACTCAACACATT
TCGTTACTTATGAATTTATGAGAGAACGTTTAAATCCAGAAGGAGGATAC
AATCCACGTGCGCATCTTCTTGCTGGTGCGACAGCTGGTGGTGTAGCGGC
CGCGGTCACAACGCCATTAGATGTTGCTAAGACATTGTTGAACACTCAAG
AAAAAAGTGTTATTTTGAACTCTTCAATTAAAAAGATTCCCGCTAAACGA
CGACTTGTGGTAACTGGAATGTTCAATGCTTTAAAAACTATTTATGTGAT
GAGAGGTATAAAGGGATACATTCGAGGAATGAAAGCTCGTGTTATTTACC
AAATGCCATCTTGTGCTATATCTTGGAGTGTTTACGAATTCTTCAAGCAT
TACCTATCACTCTCCATATCTGACGAAGAGATGATGGACCTGACAGTGTG
ACATTATCTGGAGTGGTTGCGACACTTTTTCACGATGGGCTTATGAATCC
AGTTGAAGACTCGACTGCAAAGTTTGCGTCCGCATCCAAAAGCAGCTTAC
AAAGGTGTTAGTGATGCATTCCGTCAGATCACAAAAAATGAAGGCATATT
GCGACCATTACGTGGAATTAACATTGTGGCACTAGGAGCTGGACCGTCAC
ATGCACTGTACTTTTGCAGCTATGAAATGATGAAAAGTAAATTGAATGGT
AAAGGAAATACCCATGTGACAAATGATGGCAGGAGCAGCAGCAGGAATTA
TGGAACATTGTCTCATGTATCCTGTAGATAGTATAAAGTTGTCAAGCAAA
GACTTCAGGTGTATGACAGCCCATACAGAGGAGTTTTCCATTGTGCTACT
CAGATCCTTAAAACTGAAGGAATAACTGCTTTCTATCGAAGTTTCACAAC
CCAAGTCACAATGAACATCCCATTTCACTCAACACATTTCGTTACTTATG
AATTTATGAGAGAACGTTTAAATCCAGAAGGAGGATACAATCCACGTGCG
CATCTTCTTGCTGGTGCGACAGCTGGTGGTGTAGCGGCCGCGGTCACAAC
GCCATTAGATGTTGCTAAGACATTGTTGAACACTCAAGAAAAAAGTGTTA
TTTTGAACTCTTCAATTAAAAAGATTCCCGCTAAACGACGACTTGTGGTA
ACTGGAATGTTCAATGCTTTAAAAACTATTTATGTGATGAGAGGTATAAA
GGGATACATTCGAGGAATGAAAGCTCGTGTTATTTACCAAATGCCATCTT
GTGCTATATCTTGGAGTGTTTACGAATTCTTCAAGCATTACCTATCACTC
TCCATATCTGACGAAGAGATGATGGACCTGACAGTGTGACATTATCTGGA
GTGGTTGCGACACTTTTTCACGATGGGCTTATGAATCCAGTTGAAGACTC
GACTGCAAAGTTTGCGTCCGCATCCAAAAGCAGCTTACAAAGGTGTTAGT
GATGCATTCCGTCAGATCACAAAAAATGAAGGCATATTGCGACCATTACG
TGGAATTAACATTGTGGCACTAGGAGCTGGACCGTCACATGCACTGTACT
TTTGCAGCTATGAAATGATGAAAAGTAAATTGAATGGTAAAGGAAATACC
CATGTGACAAATGATGGCAGGAGCAGCAGCAGGAATTATGGAACATTGTC
TCATGTATCCTGTAGATAGTATAAAGTTGTCAAGCAAAGACTTCAGGTGT
ATGACAGCCCATACAGAGGAGTTTTCCATTGTGCTACTCAGATCCTTAAA
ACTGAAGGAATAACTGCTTTCTATCGAAGTTTCACAACCCAAGTCACAAT
GAACATCCCATTTCACTCAACACATTTCGTTACTTATGAATTTATGAGAG
AACGTTTAAATCCAGAAGGAGGATACAATCCACGTGCGCATCTTCTTGCT
GGTGCGACAGCTGGTGGTGTAGCGGCCGCGGTCACAACGCCATTAGATGT
TGCTAAGACATTGTTGAACACTCAAGAAAAAAGTGTTATTTTGAACTCTT
CAATTAAAAAGATTCCCGCTAAACGACGACTTGTGGTAACTGGAATGTTC
AATGCTTTAAAAACTATTTATGTGATGAGAGGTATAAAGGGATACATTCG
AGGAATGAAAGCTCGTGTTATTTACCAAATGCCATCTTGTGCTATATCTT
GGAGTGTTTACGAATTCTTCAAGCATTACCTATCACTCTCCATATCTGAC
GAAGAGATGATGGACCTGACAGTGTGACATTATCTGGAGTGGTTGCGACA
CTTTTTCACGATGGGCTTATGAATCCAGTTGAAGACTCGACTGCAAAGTT
TGCGTCCGCATCCAAAAGCAGCTTACAAAGGTGTTAGTGATGCATTCCGT
CAGATCACAAAAAATGAAGGCATATTGCGACCATTACGTGGAATTAACAT
TGTGGCACTAGGAGCTGGACCGTCACATGCACTGTACTTTTGCAGCTATG
AAATGATGAAAAGTAAATTGAATGGTAAAGGAAATACCCATGTGACAAAT
GATGGCAGGAGCAGCAGCAGGAATTATGGAACATTGTCTCATGTATCCTG
TAGATAGTATAAAGTTGTCAAGCAAAGACTTCAGGTGTATGACAGCCCAT
ACAGAGGAGTTTTCCATTGTGCTACTCAGATCCTTAAAACTGAAGGAATA
ACTGCTTTCTATCGAAGTTTCACAACCCAAGTCACAATGAACATCCCATT
TCACTCAACACATTTCGTTACTTATGAATTTATGAGAGAACGTTTAAATC
CAGAAGGAGGATACAATCCACGTGCGCATCTTCTTGCTGGTGCGACAGCT
GGTGGTGTAGCGGCCGCGGTCACAACGCCATTAGATGTTGCTAAGACATT
GTTGAACACTCAAGAAAAAAGTGTTATTTTGAACTCTTCAATTAAAAAGA
TTCCCGCTAAACGACGACTTGTGGTAACTGGAATGTTCAATGCTTTAAAA
ACTATTTATGTGATGAGAGGTATAAAGGGATACATTCGAGGAATGAAAGC
TCGTGTTATTTACCAAATGCCATCTTGTGCTATATCTTGGAGTGTTTACG
AATTCTTCAAGCATTACCTATCACTCTCCATATCTGACGAAGAGATGATG
GACCTGACAGTGTGACATTATCTGGAGTGGTTGCGACACTTTTTCACGAT
GGGCTTATGAATCCAGTTGAAGACTCGACTGCAAAGTTTGCGTCCGCATC
CAAAAGCAGCTTACAAAGGTGTTAGTGATGCATTCCGTCAGATCACAAAA
AATGAAGGCATATTGCGACCATTACGTGGAATTAACATTGTGGCACTAGG
AGCTGGACCGTCACATGCACTGTACTTTTGCAGCTATGAAATGATGAAAA
GTAAATTGAATGGTAAAGGAAATACCCATGTGACAAATGATGGCAGGAGC
AGCAGCAGGAATTATGGAACATTGTCTCATGTATCCTGTAGATAGTATAA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004592XLOC_004592Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008153-exon-sc0000082-1575043694:199924..200091TCONS_00008153-exon-sc0000082-1575043694:199924..200091Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1575043694:199523..199632TCONS_00008153-exon-sc0000082-1575043694:199523..199632Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1575043694:194814..195030TCONS_00008153-exon-sc0000082-1575043694:194814..195030Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1575043694:194553..194609TCONS_00008153-exon-sc0000082-1575043694:194553..194609Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1575043694:192139..194072TCONS_00008153-exon-sc0000082-1575043694:192139..194072Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1510915933:199924..200091TCONS_00008153-exon-sc0000082-1510915933:199924..200091Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1510915933:199523..199632TCONS_00008153-exon-sc0000082-1510915933:199523..199632Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1510915933:194814..195030TCONS_00008153-exon-sc0000082-1510915933:194814..195030Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1510915933:194553..194609TCONS_00008153-exon-sc0000082-1510915933:194553..194609Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1510915933:192139..194072TCONS_00008153-exon-sc0000082-1510915933:192139..194072Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1491911889:199924..200091TCONS_00008153-exon-sc0000082-1491911889:199924..200091Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1491911889:199523..199632TCONS_00008153-exon-sc0000082-1491911889:199523..199632Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1491911889:194814..195030TCONS_00008153-exon-sc0000082-1491911889:194814..195030Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1491911889:194553..194609TCONS_00008153-exon-sc0000082-1491911889:194553..194609Clytia hemisphaericaexon
TCONS_00008153-exon-sc0000082-1491911889:192139..194072TCONS_00008153-exon-sc0000082-1491911889:192139..194072Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008153-proteinTCONS_00008153-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:192139..200091 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.34978	3.98864e-10	3.31633	0.89982	2.17805e-08	5.11716	2.33419e-08	3.78128e-05	10.0054	4.08762	3.13041	0.708036	4.16044	4.77057	6.34044	0.00318046	3.5439	6.48649	8.54948	25.655	0	0	3.69689	1.74887e-05	26.0405	0	3.13843	6.69123	3.79986	7.62104
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023395Mt_carrier_dom
IPR018108Mitochondrial_sb/sol_carrier
Blast
[Close]
BLAST of TCONS_00008153 vs. Swiss-Prot (Human)
Match: MFRN1 (Mitoferrin-1 OS=Homo sapiens GN=SLC25A37 PE=2 SV=2)

HSP 1 Score: 330.487 bits (846), Expect = 5.548e-105
Identity = 159/290 (54.83%), Postives = 216/290 (74.48%), Query Frame = 3 
Query:  204 SVYIMAGAAAGIMEHCLMYPVDSIKTRLQSLRPHPKAAYKGVSDAFRQITKNEGILRPLRGINIVALGAGPSHALYFCSYEMMKSKLNG----KGNTHVTNALSGVVATLFHDGLMNPVEVVKQRLQVYDSPYRGVFHCATQILKTEGITAFYRSFTTQVTMNIPFHSTHFVTYEFMRERLNPEGGYNPRAHLLXXXXXXXXXXXXXXPLDVAKTLLNTQEKSVILNSSIKKIPAKRRLVVTGMFNALKTIYVMRGIKGYIRGMKARVIYQMPSCAISWSVYEFFKHYLS 1061
            S ++ AGA AGI+EH +MYPVDS+KTR+QSL P PKA Y  +  A ++I + EG  RPLRG+N++ +GAGP+HA+YF  YE MK  LN     +GN+H+ N ++G +ATL HD +MNP EVVKQRLQ+Y+S +R    C   + +TEG+ AFYRS+TTQ+TMNIPF S HF+TYEF++E++NP   YNP++H+++G  AG +AAA TTPLDV KTLLNTQE   +   S+  I  +    ++GM NA +T+Y + G+ GY +G++ARVIYQMPS AISWSVYEFFK++L+
Sbjct:   46 STHMTAGAMAGILEHSVMYPVDSVKTRMQSLSPDPKAQYTSIYGALKKIMRTEGFWRPLRGVNVMIMGAGPAHAMYFACYENMKRTLNDVFHHQGNSHLANGIAGSMATLLHDAVMNPAEVVKQRLQMYNSQHRSAISCIRTVWRTEGLGAFYRSYTTQLTMNIPFQSIHFITYEFLQEQVNPHRTYNPQSHIISGGLAGALAAAATTPLDVCKTLLNTQENVAL---SLANISGR----LSGMANAFRTVYQLNGLAGYFKGIQARVIYQMPSTAISWSVYEFFKYFLT 328
The following BLAST results are available for this feature:
BLAST of TCONS_00008153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFRN15.548e-10554.83Mitoferrin-1 OS=Homo sapiens GN=SLC25A37 PE=2 SV=2[more]
back to top