TCONS_00008150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008150
Unique NameTCONS_00008150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008150 ID=TCONS_00008150|Name=TCONS_00008150|organism=Clytia hemisphaerica|type=transcript|length=365bp
GAGGAGACTATTGCTACATTTGAGCTGAAACCAGAAACAGTTAACATCGA
CCAGGATGTCAGTGAAATTATTGAGGAGAAAACTGAATTGAACCCATTTG
AGCTTATCGATGATAAAGAAATAGATGACAAGATAGAATCATCAACACCA
TCAACTTTGGCTGAATCCAAATCTACTACTGCTGTTTCTGAGAACACTGA
CATCGTGGTTGAAAAGACCATCAACATGAATATTGAAAAATCAGAACTGC
CGACAATCATTATTGAGGATGATACTGGGAAAGGAGATCAAGAAACAACT
GGCAGCGATgttgaaaatgaagatattaTACAAACACCAGGAGATAGGAC
ATCTGTTGATGAACA
Run BLAST on NCBI

transcript from alignment at sc0000082:133899..134472-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008150 ID=TCONS_00008150|Name=TCONS_00008150|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at sc0000082:133899..134472- (Clytia hemisphaerica)
GAGGAGACTATTGCTACATTTGAGCTGAAACCAGAAACAGTTAACATCGA
CCAGGATGTCAGTGAAATTATTGAGGAGAAAACTGAATTGAACCCATTTG
AGCTTATCGATGATAAAGAAATAGATGACAAGATAGAATCATCAACACCA
TCAACTTTGGCTGAATCCAAATCTACTACTGCTGTTTCTGAGAACACTGA
CATCGTGGTTGAAAAGACCATCAACATGAATATTGAAAAATCAGAACTGC
CGACAATCATTATTGAGGATGATACTGGGAAAGGTGGAGTTCAGTAGATA
GTGCAACTTAGAGCTTGCTATTTTCTTCTCTTATTATGCTATTAATCACT
TATTAGATGTAGTTTACTAACGTTTGACTGATTTAACGATTAGCATGCAC
CATTCATCTATACATGACACTTTTTTTCAGTTTAGCCAGTTTTGAGACTG
GGAGTTCAGTTAAAACAGTATTGTTTCATTTAAACTCAGTAGGAGATCAA
GAAACAACTGGCAGCGATGTTGAAAATGAAGATATTATACAAACACCAGG
AGATAGGACATCTGTTGATGAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004588XLOC_004588Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008150-exon-sc0000082-1575043694:134190..134472TCONS_00008150-exon-sc0000082-1575043694:134190..134472Clytia hemisphaericaexon
TCONS_00008150-exon-sc0000082-1575043694:133899..133980TCONS_00008150-exon-sc0000082-1575043694:133899..133980Clytia hemisphaericaexon
TCONS_00008150-exon-sc0000082-1510915933:134190..134472TCONS_00008150-exon-sc0000082-1510915933:134190..134472Clytia hemisphaericaexon
TCONS_00008150-exon-sc0000082-1510915933:133899..133980TCONS_00008150-exon-sc0000082-1510915933:133899..133980Clytia hemisphaericaexon
TCONS_00008150-exon-sc0000082-1491911889:134190..134472TCONS_00008150-exon-sc0000082-1491911889:134190..134472Clytia hemisphaericaexon
TCONS_00008150-exon-sc0000082-1491911889:133899..133980TCONS_00008150-exon-sc0000082-1491911889:133899..133980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:133899..134472 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.23831	0	2.40949	2.81705	5.0749	5.35613	1.54453	5.03458	0.847993	2.48457	2.59363	2.59408	4.05982	5.97107	1.09799	2.78119	5.27724	3.03011	2.80415	2.32068	1.20712	0.72912	1.51589	1.50601	0	0	1.49001	1.531
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top