TCONS_00008149 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008149
Unique NameTCONS_00008149
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008149 ID=TCONS_00008149|Name=TCONS_00008149|organism=Clytia hemisphaerica|type=transcript|length=593bp
CCGGAGATGAGGAAATGGCAATGTTTGCTAACGAAACTTCAATATCCACA
CAAGGCGATATTTCTTTGGCCCTTGATGAAGAATATGTCGAAGATAAATC
TTTCAAACCAAGGAATAAGGTTATTGATAATGAGTCTAGTGAAAGTGACA
TGGACTTGTCGGTTGATATTGATTTCATCTCAATGCAGAAATCAACCGAC
ACTAAGGAATATGGATTTGTTGCTCATAATGATCTAGACTTGAAGGATCT
ACGTAAAACATTTGTGAGATCAAAAAATATCAAGTTCAGCAAATTGAAAA
CAGAAGAACGTTCAGACAGTGGTACAAGTGATGACTCATCCTCTGCAGAA
TCTGATAGTGATGTTGAGATAATGCAAGttGTCCCTACACGAAAAGATTC
TTTCGAAGAGGAGGTCTCCATTTTCCACCACACACTTAATAAGAGTGATC
ACACTATGGAAAatcttgaagaagaaaatgttcTCCCGAAATCTATTTCA
AAAGGTGTGAGAAATTCTCAAGATATAACTGGAAATGATGAAGAAAACAT
TCATTTGCTGAAatttgatttctcaaaaatgagtAAACCATCT
Run BLAST on NCBI

protein sequence of TCONS_00008149-protein

>TCONS_00008149-protein ID=TCONS_00008149-protein|Name=TCONS_00008149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
GDEEMAMFANETSISTQGDISLALDEEYVEDKSFKPRNKVIDNESSESDM
DLSVDIDFISMQKSTDTKEYGFVAHNDLDLKDLRKTFVRSKNIKFSKLKT
EERSDSGTSDDSSSAESDSDVEIMQVVPTRKDSFEEEVSIFHHTLNKSDH
TMENLEEENVLPKSISKGVRNSQDITGNDEENIHLLKFDFSKMSKPS
Run BLAST on NCBI

transcript from alignment at sc0000082:132650..133553-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008149 ID=TCONS_00008149|Name=TCONS_00008149|organism=Clytia hemisphaerica|type=transcript|length=904bp|location=Sequence derived from alignment at sc0000082:132650..133553- (Clytia hemisphaerica)
CCGGAGATGAGGAAATGGCAATGTTTGCTAACGAAACTTCAATATCCACA
CAAGGCGATATTTCTTTGGCCCTTGATGAAGAATATGTCGAAGATAAATC
TTTCAAACCAAGGAATAAGGTTATTGATAATGAGTCTAGTGAAAGTGACA
TGGACTTGTCGGTTGATATTGATTTCATCTCAATGCAGAAATCAACCGAC
ACTAAGGAATATGGATTTGTTGCTCATAATGATCTAGACTTGAAGGATCT
ACGTAAAACATTTGTGAGATCAAAAAATATCAAGTTCAGCAAATTGAAAA
CAGAAGAACATTCAGACAGTGGTACAAGTGCTGACCCATCCTCTGCANTA
GCAAATTGAAAACAGAAGAACGTTCAGACAGTGGTACAAGTGATGACTCA
TCCTCTGCAGAATCTGATAGTGATGTTGAGATAATGCAAGGTACATTTTT
TGTATTGATTATATTTTCTCGTCTGTCATACAGACGTTCTTGCAAAGTAC
TATATAGATCATGGTTGAAATATTTGGTATACAATTTAATCCTGCTAAGA
ATGTTTGAAATAATTATAATCAATCAGGAAAAGTTTTATCTGGTCTACGT
GGCACAAAGTAAAGAAGTACTCCATGATATCTGATATTCTTCCCAATAAT
TTTAACAGGGCATTAATTGAGATATTATTTTGTTTTCAGTTGTCCCTACA
CGAAAAGATTCTTTCGAAGAGGAGGTCTCCATTTTCCACCACACACTTAA
TAAGAGTGATCACACTATGGAAAATCTTGAAGAAGAAAATGTTCTCCCGA
AATCTATTTCAAAAGGTGTGAGAAATTCTCAAGATATAACTGGAAATGAT
GAAGAAAACATTCATTTGCTGAAATTTGATTTCTCAAAAATGAGTAAACC
ATCT

Coding sequence (CDS) from alignment at sc0000082:132650..133553-

>TCONS_00008149 ID=TCONS_00008149|Name=TCONS_00008149|organism=Clytia hemisphaerica|type=CDS|length=1773bp|location=Sequence derived from alignment at sc0000082:132650..133553- (Clytia hemisphaerica)
TTGTCCCTACACGAAAAGATTCTTTCGAAGAGGAGGTCTCCATTTTCCAC
CACACACTTAATAAGAGTGATCACACTATGGAAAATCTTGAAGAAGAAAA
TGTTCTCCCGAAATCTATTTCAAAAGGTGTGAGAAATTCTCAAGATATAA
CTGGAAATGATGAAGAAAACATTCATTTGCTGAAATTTGATTTCTCAAAA
ATGAGTAAACCATCTGTTCAGACAGTGGTACAAGTGATGACTCATCCTCT
GCAGAATCTGATAGTGATGTTGAGATAATGCAAGGGAGATGAGGAAATGG
CAATGTTTGCTAACGAAACTTCAATATCCACACAAGGCGATATTTCTTTG
GCCCTTGATGAAGAATATGTCGAAGATAAATCTTTCAAACCAAGGAATAA
GGTTATTGATAATGAGTCTAGTGAAAGTGACATGGACTTGTCGGTTGATA
TTGATTTCATCTCAATGCAGAAATCAACCGACACTAAGGAATATGGATTT
GTTGCTCATAATGATCTAGACTTGAAGGATCTACGTAAAACATTTGTGAG
ATCAAAAAATATCAAGTTCAGCAAATTGAAAACAGAAGAACTTGTCCCTA
CACGAAAAGATTCTTTCGAAGAGGAGGTCTCCATTTTCCACCACACACTT
AATAAGAGTGATCACACTATGGAAAATCTTGAAGAAGAAAATGTTCTCCC
GAAATCTATTTCAAAAGGTGTGAGAAATTCTCAAGATATAACTGGAAATG
ATGAAGAAAACATTCATTTGCTGAAATTTGATTTCTCAAAAATGAGTAAA
CCATCTGTTCAGACAGTGGTACAAGTGATGACTCATCCTCTGCAGAATCT
GATAGTGATGTTGAGATAATGCAAGGGAGATGAGGAAATGGCAATGTTTG
CTAACGAAACTTCAATATCCACACAAGGCGATATTTCTTTGGCCCTTGAT
GAAGAATATGTCGAAGATAAATCTTTCAAACCAAGGAATAAGGTTATTGA
TAATGAGTCTAGTGAAAGTGACATGGACTTGTCGGTTGATATTGATTTCA
TCTCAATGCAGAAATCAACCGACACTAAGGAATATGGATTTGTTGCTCAT
AATGATCTAGACTTGAAGGATCTACGTAAAACATTTGTGAGATCAAAAAA
TATCAAGTTCAGCAAATTGAAAACAGAAGAACTTGTCCCTACACGAAAAG
ATTCTTTCGAAGAGGAGGTCTCCATTTTCCACCACACACTTAATAAGAGT
GATCACACTATGGAAAATCTTGAAGAAGAAAATGTTCTCCCGAAATCTAT
TTCAAAAGGTGTGAGAAATTCTCAAGATATAACTGGAAATGATGAAGAAA
ACATTCATTTGCTGAAATTTGATTTCTCAAAAATGAGTAAACCATCTGTT
CAGACAGTGGTACAAGTGATGACTCATCCTCTGCAGAATCTGATAGTGAT
GTTGAGATAATGCAAGGGAGATGAGGAAATGGCAATGTTTGCTAACGAAA
CTTCAATATCCACACAAGGCGATATTTCTTTGGCCCTTGATGAAGAATAT
GTCGAAGATAAATCTTTCAAACCAAGGAATAAGGTTATTGATAATGAGTC
TAGTGAAAGTGACATGGACTTGTCGGTTGATATTGATTTCATCTCAATGC
AGAAATCAACCGACACTAAGGAATATGGATTTGTTGCTCATAATGATCTA
GACTTGAAGGATCTACGTAAAACATTTGTGAGATCAAAAAATATCAAGTT
CAGCAAATTGAAAACAGAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004589XLOC_004589Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008149-proteinTCONS_00008149-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008149-exon-sc0000082-1575043694:133245..133553TCONS_00008149-exon-sc0000082-1575043694:133245..133553Clytia hemisphaericaexon
TCONS_00008149-exon-sc0000082-1575043694:133114..133182TCONS_00008149-exon-sc0000082-1575043694:133114..133182Clytia hemisphaericaexon
TCONS_00008149-exon-sc0000082-1575043694:132650..132864TCONS_00008149-exon-sc0000082-1575043694:132650..132864Clytia hemisphaericaexon
TCONS_00008149-exon-sc0000082-1510915933:133245..133553TCONS_00008149-exon-sc0000082-1510915933:133245..133553Clytia hemisphaericaexon
TCONS_00008149-exon-sc0000082-1510915933:133114..133182TCONS_00008149-exon-sc0000082-1510915933:133114..133182Clytia hemisphaericaexon
TCONS_00008149-exon-sc0000082-1510915933:132650..132864TCONS_00008149-exon-sc0000082-1510915933:132650..132864Clytia hemisphaericaexon
TCONS_00008149-exon-sc0000082-1491911889:133245..133553TCONS_00008149-exon-sc0000082-1491911889:133245..133553Clytia hemisphaericaexon
TCONS_00008149-exon-sc0000082-1491911889:133114..133182TCONS_00008149-exon-sc0000082-1491911889:133114..133182Clytia hemisphaericaexon
TCONS_00008149-exon-sc0000082-1491911889:132650..132864TCONS_00008149-exon-sc0000082-1491911889:132650..132864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:132650..133553 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.97277	3.5137	5.02121	3.47967	5.10831	2.55983	6.65178	6.67213	7.55196	9.16145	6.45863	5.53781	8.84817	8.35936	8.7087	11.26	2.77427	3.98095	7.16952	7.09129	3.12647	3.39854	1.69492	2.02247	2.77746	1.94764	1.6469	2.43363	4.30692	3.34329
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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