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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008141 ID=TCONS_00008141|Name=TCONS_00008141|organism=Clytia hemisphaerica|type=transcript|length=3017bpRun BLAST on NCBI transcript from alignment at sc0000082:101941..115767- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008141 ID=TCONS_00008141|Name=TCONS_00008141|organism=Clytia hemisphaerica|type=transcript|length=13827bp|location=Sequence derived from alignment at sc0000082:101941..115767- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008141 vs. Swiss-Prot (Human)
Match: SYTL4 (Synaptotagmin-like protein 4 OS=Homo sapiens GN=SYTL4 PE=1 SV=2) HSP 1 Score: 175.252 bits (443), Expect = 1.799e-45 Identity = 121/338 (35.80%), Postives = 176/338 (52.07%), Query Frame = 3
Query: 1839 SMTSIYSTDSANVYGQVPIRGEVQFGLKYDTTTSLFEVHVFKAKGIAAVDTKKETTDPYCKVYLLPDXXXXXXXXXXXXXXXLNPEWDEILEFKINIRDLRLRTLSLTIWHQEKLGRNVFLGEVMQDM-STLLDNGSLYGTPTTNWYDLQEKAQAPTRELYRGELYISLCFEDDNFKGVREDTEDEXXXXXXXXXXDMKSNGRVNIHILKATDLPAADKDGASDPFCKVYLLPMKQSKHKRKTPVIRDTLCPVWDYRTEYD-IDYEDLGDHGIEFSVWDWDRGNSNDLLGCARIGPGN--NSGE---WDDANGVEIEAWRHMIDNPNVWKEFKIKLRS 2831
SM SIYS A +G + + G + F LKY+ T VHV + +A D K+ ++PY K YLLPD+++ GK+KT ++ T+NP +DE L ++I L RTL ++WH + GRN FLGE M S LD + P + P+ ++GEL +SL + + V D + K G + + I +A +L AA G SD F K YLLPM+ KRKTPV++ TL P +++ Y+ + EDL +E +VWD + SND LG R+G G ++GE W D+ G E+ W+ M P W E ++LRS
Sbjct: 340 SMMSIYS--EAGDFGNIFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTINPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESPTGLPS---HKGELVVSLKYIPASKTPVGGDRKKSKGG----------EGGELQVWIKEAKNLTAAKAGGTSDSFVKGYLLPMRNKASKRKTPVMKKTLNPHYNHTFVYNGVRLEDLQHMCLELTVWDREPLASNDFLGGVRLGVGTGISNGEVVDWMDSTGEEVSLWQKMRQYPGSWAEGTLQLRS 662 HSP 2 Score: 148.288 bits (373), Expect = 9.662e-37 Identity = 89/243 (36.63%), Postives = 131/243 (53.91%), Query Frame = 3
Query: 63 KYKLSKEDLLQKTLQLTIWNHDRLGKNDCLGEVQLNMKQYANTNKLNEEQPVWYTLQSPAPVVGGGADDNIGELVLGLKY------------------DNEQLIVTVKEAKGLTSLTPNKMPNPFVKCYLLPDKSRKSKRKTGVQKKTNNPMWNEKFTYKHVSIDDLNTRAIEITVWDYDS-SAHQFLGGVRLGLPEGDE-----PWKDSFKDEVHLWESMMNHLGILAEYTIPLRKTMTSVK 719
+Y++ + L Q+TLQ ++W+H R G+N LGE ++ M + KL+ P+ + + +P G + GELV+ LKY + +L V +KEAK LT+ + FVK YLLP +++ SKRKT V KKT NP +N F Y V ++DL +E+TVWD + +++ FLGGVRLG+ G W DS +EV LW+ M + G AE T+ LR +M K
Sbjct: 429 RYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESPT---GLPSHKGELVVSLKYIPASKTPVGGDRKKSKGGEGGELQVWIKEAKNLTAAKAGGTSDSFVKGYLLPMRNKASKRKTPVMKKTLNPHYNHTFVYNGVRLEDLQHMCLELTVWDREPLASNDFLGGVRLGVGTGISNGEVVDWMDSTGEEVSLWQKMRQYPGSWAEGTLQLRSSMAKQK 668 The following BLAST results are available for this feature:
BLAST of TCONS_00008141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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