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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008134 ID=TCONS_00008134|Name=TCONS_00008134|organism=Clytia hemisphaerica|type=transcript|length=2342bpRun BLAST on NCBI protein sequence of TCONS_00008134-protein >TCONS_00008134-protein ID=TCONS_00008134-protein|Name=TCONS_00008134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=649bp MENKTMLFYIAGLLLFATIGIQAQRSPSKTFLEVVGLSERVVGGKPVSQGRun BLAST on NCBI transcript from alignment at sc0000082:628671..636679+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008134 ID=TCONS_00008134|Name=TCONS_00008134|organism=Clytia hemisphaerica|type=transcript|length=8009bp|location=Sequence derived from alignment at sc0000082:628671..636679+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000082:628671..636679+ >TCONS_00008134 ID=TCONS_00008134|Name=TCONS_00008134|organism=Clytia hemisphaerica|type=CDS|length=19500bp|location=Sequence derived from alignment at sc0000082:628671..636679+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008134 vs. Swiss-Prot (Human)
Match: TM11D (Transmembrane protease serine 11D OS=Homo sapiens GN=TMPRSS11D PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.078e-38 Identity = 89/256 (34.77%), Postives = 130/256 (50.78%), Query Frame = 1
Query: 271 EVVGLSE-RVVGGKPVSQGMFPWIVFIQANHKYKNNTQTSNLCGGSLIHERWVLTAAHCLPHGERTTRVVVHIGKKSPVSFSQSRTNLPAEKYRVRSIFIHPNYAGSGFSGADLALLHLPRPSKHPT-IRLAISPVDDKWYESGSIATVAGWGSTSPHDTQQISQELRSAEVKVVSHKKCNKANSFNGSVLKDMFCAS--GDGKDACYSDSGGPLMVRDGCRDEWVLIGVVSWGKSCAHKDYPGVYVKLSVYSDWL 1026
+++ LSE R++GG +G +PW V ++ N+ + CGGSLI+ W+LTAAHC + ++ S T P + RVR+I IH NY + D+AL+ L I P + GS A V GWG+ ELR +V+++S+ CN +S+NG++L M CA G DAC DSGGPL V++ R W ++G+VSWG C D PGVY +++ Y DW+
Sbjct: 178 DLITLSEQRILGGTEAEEGSWPWQVSLRLNNAHH--------CGGSLINNMWILTAAHCFRSNS---------NPRDWIATSGISTTFPKLRMRVRNILIHNNYKSATHEN-DIALVRLENSVTFTKDIHSVCLPAATQNIPPGSTAYVTGWGAQ--EYAGHTVPELRQGQVRIISNDVCNAPHSYNGAILSGMLCAGVPQGGVDACQGDSGGPL-VQEDSRRLWFIVGIVSWGDQCGLPDKPGVYTRVTAYLDWI 412 The following BLAST results are available for this feature:
BLAST of TCONS_00008134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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