TCONS_00008132 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008132
Unique Name	TCONS_00008132
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3799

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000082:614039..626616+

transcript sequence

>TCONS_00008132 ID=TCONS_00008132|Name=TCONS_00008132|organism=Clytia hemisphaerica|type=transcript|length=3799bp
AATTAATGAAATATGAATGATTCTCTTTCTCTTTAGATTTAAAATACAGA
ATGGCAGTAAAATAAAGGGAAACAGAACATTACACAACACTTTTTGTTTA
CTTATTAAGAGTTTATTTGGTTTATATTCATCCTTGAAAAGACTTTGTAA
TGGATACAGCTTTTTTGACTTGTTGTATTTTATTGTTATCACAATGTTCG
TTTATATTTGGAGCTCGATGCAACAAACAGTTGATACCTGATCAAAACAA
GAATATAAAATTTGAGGATTTAAATGGAGATATCGAACCCACAAAACTTT
CAACAGAATATGACGCAGCAGGTTTACAACCTCTTTTTAATTTGGCAAAC
TCTTTTATGAATACAGTACAAGGAGAGAAATTATCTGAAGAATTCAAAGG
ATTGAACTTTGATGACATCACCAATGATGAAAACAGAGATAAGCTCATCA
AATATGAAACTCCAGTTGCTATCGCCGCTGGCTTTGGAGTCTTGTTCATG
CTTGTTATGCCTTTTGTTGGCTTGTTCTTTTGTTGTTGCCGATGCTGTGG
CAAGTGTGGTGGTAAAAGATATCAAAGTCAGAAAGCGGCAGATAGACATT
CTTGTTGTGTTATTATGACCGTGATTTTGTTCATCATTTCTGTTATGATG
CTGTGTGGTTGTATGTTCATGTTTGTAACAAACAGCCGAACACATGAAAC
TGCCCAAGATTTAAGCTCCACCTACAACAAGGCTGTGGATTCAGTCGTTG
GTGTTGTCAATTCTACAAAAAATGTTCTGGAATATGATATAGCTGGGGAG
TTTGTGCCATGTCTTTTAGATGCTATCAAACATGAGCTTGGTCCTTATGG
TATCAGATCAAATTTTGGTGATCCCTTACAGAAATTCATCAGTGATAATG
TAACTGCTGCTTTAGATACTGCAGATGATATGGCAAAAAGGGTGGATACT
TTAAAGGTAGATCTTGATGCTATAAAAGCAAAAAGTGATGATCTTAAAAG
TGATGGATCAAGCCTGAACAACAACTTGACGACTATAAGGGACACTGACc
ttgaaaatgcaaaaattggATGTGGAGGTGAACCACAATGTGTGGCTTTG
ATTGATGGCTTTAAGAACAAAATTACAATGGAAGTGAATTTTGACAACCT
GCCTGATATTCAGTCTTCTATTGATGAAGTTGATGAAGCTGTCTCTCTAA
ATATTTCAGAACAAGTACAAGTTGgaagaaaaactttgaaggaTATCCCA
ACAACCGTTCAAACTAAAGCTCAATCAAGTGTAGACTcgGTTCTCAGTTC
AATAAATGATATTCAAGGAGAGCTGGACAAAGAAGTCAACAATATTGTGA
AGAGTCTTGATGATGCCATCACAACTCAAGAAGCAAAATACAAAGActat
gcaaaatattttgatcaatcaaatgagaacttcaaataTGAAAATTACAG
ATACTACGCATATATTGGGTTGTCTGCTTTGATGGCATTTATTGTACTTT
TGTTATTTGGTGGACTTGCTCTTGGAATATGTGGATACCATCGAGAAGAT
TCTCCGTCCAACAGAACAAAAAAGGCCACGTGTGGTGGCCATTGTCTTAT
GGCgtCTGTTGGATTCATGTTCATTTTCGCTTTCTTCTTGATGTTGTTTT
GCACCATTTGGTATGTGCTCGGCATCCATCTCCATTTTGTATGTCGAGAC
TTGAAAGATGCAACCTTACTGGACACAATACTCTCCGACCAAATGAATTT
GAAACTTGAAGATAATAGACCTGAAGTATCTGTTCAAAACACTTTGAACA
ATTGTAGAAAGAACCTTCCATTATATAAAGCTCTTGGTGGAGAAACTGTT
TTCAATATTACATCCAAATTCAACTTCAGAACTCTAGCAGACGATATTGA
TTCAAAGCTAGATGGTATTTCCATTGACTTGACCGATCAAGTTCTGGTCA
CACAAGACGTCCAGGATGCTTTGAACAATTTGAAGACCAATGACGTTAGC
TCCATCAATTTCACAGAATTCTTTGCCATTCTTGACGAATCCATCACTAA
ATTCAACCTGACAGAAGTCGCCAATAATGTGACTGCTGCTGCTCAGAGTC
TTAACGCTACGAAACCGAGTACATCCAATGAATTACTTGCCATTGCCACC
AAATTGAAGACTCTTGATTCATTAACCATCCCAAACATCATCTCCAAAGC
TAATGCAATCAAACCTGACGTCACAAAGGTTCAAAACCTGGCTGTCACTC
TGCAGGATGACGCAAGTGTACTATTGGATCAATTGCTTTCTTCCGAATCC
TTCATTCAGACGAAAACTGCTGGTGAAGTTATTTCAtTGGTTTCAAAATT
TGCAGCTCTCATTTTGGATTGGCTGATGGAAGGCACTGAGTTTTTGGTCA
ACCAGgCGTTGAACAATATCCTGAAATGTAAGCCGATCTCCGATTTATAT
GATGGTTTGGTTTCGACTTTGTTATGTGATGATATCGTTCAGAATGCTAA
TGGTTTCTGGCTGGGATTGGGCTGGTGTTTGTTGTTCTTCGTTCCAGCCA
TCATCTTGGCCGTCAAGTTGGCCAAATATTACCGAAGGATGGAATACGAC
TCAGGtCTGGATCAATTCGAGCACCCACCTTACAACGACAAAATCCCTCT
ACAAACGTACGAAACAACGGAGGGCGGTGGAGGCGGACAGGAAAGAAGTA
GTTTATATGGAGGTGGTGGAGCGCATGGGCGCGGTTATGGAGGAACAGAT
CCCATGTTGATGGCTGATGATCTAGAGTATGATCACCACCCACCACCACC
CTACCAAAATCAAGGTTACGCCAACCACTGAGATATAAGAGAGGGTCGAA
TGATATTTAAATGAAGAAAATGTTTGCATCTGCTTCAAGCTGATTATAAT
GGCTATATTTAGTCTTGAGATTGGaagatttttagaaagaaaaatgacaa
CATATGTATTGGGTGAGGATGATCTTCTTGGGTGTTGGTCACGTTGTCGT
TGGATAGGTCCCATAGACCAATCAAATCGTTGGATAGGTCCCATAGACCA
ATCAAATCGTTGGATAGGTCCCATAGACCAATCAAATCGTTGgatatttt
gtaattattttaaaatcaagCACTTTTATAAACATTGtagattttctttt
tatcaCTCAAACTCAGATCAATCGAAAGTTTGATGCTCTTCTAAAATTGT
CACCCAATTATTATTTCTTGATGATTCAGCAAATCTGTATTTCTTTCTCT
GATTTGGTGTTTTAGAATTTCGTAAAATCCGCTAAATTTGTAtgatattt
aaatattttggtttttatttagtattatttcTATAATGTTCGTCTCGCTG
GAATGCATTACATTTAATAAGCccttttactttttatatttttgtaatgt
CTTTCTGTGTTCCAAACTTCTGCAAGGGAAATTGTGCGCCGAAATAGTTC
GCTTTCATCATGTCCCTGTGCTGACTCTCTCTTTCACTTCAGAGACAGTG
GGTCGGGCAGGAACACCAAACCTTTACTCACTTCTGTACTGGAGTTACCG
GGGTAattcttttttgtcattttataaatACGTTGTTTTGAATTATTCGC
gtgttttatttgttttattttttttagagtAGAGTTTTACTCATCATAAG
TACGTACTGAGAGGACTGAGAGGATAAGTCTGTCAGCAGTCTCTACTTCT
AATACTTGTACAGTGCAAATTTTAATGAGAAACTAAAGATAATACTATGC
TTGTAATAATTTGTGTTTTGCTTATCTTTGATACCTTTAAGTCATCTGG

Run BLAST on NCBI

transcript from alignment at sc0000082:614039..626616+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008132 ID=TCONS_00008132|Name=TCONS_00008132|organism=Clytia hemisphaerica|type=transcript|length=12578bp|location=Sequence derived from alignment at sc0000082:614039..626616+ (Clytia hemisphaerica)
AATTAATGAAATATGAATGATTCTCTTTCTCTTTAGATTTAAAATACAGA
ATGGCAGTAAAATAAAGGGAAACAGAACATTACACAACACTTTTTGTTTA
CTTATTAAGAGTTTATTTGGTTTATATTCATCCTTGAAAAGACTTTGTAA
TGGATACAGCTTTTTTGACTTGTTGTATTTTATTGTTATCACAATGTTCG
TTTATATTTGGAGCTCGATGCAACAAACAGTTGATACCTGATCAAAACAA
GAATATAAAATTTGAGGATTTAAATGGAGATATCGAACCCACAAAACTTT
CAACAGAATATGACGCAGCAGGTTTACAACCTCTTTTTAATTTGGCAAAC
TCTTTTATGAATACAGTACAAGGAGAGAAATTATCTGAAGAATTCAAAGG
ATGTatgtatacatgttttttttttaattttcacttaAACTGCAATATTT
CTGATTCTTTAAGCCCCTTTTAAAAAACAACGTGAGATNATTTTTCACTT
AACTGATATTTCTGATTCTTTAAGCCCCTTTTAAAAAAACATGTGGTTAT
CATTTTGATACAACGTGAGATATGAGAAAATGTTTATGAATGCATTTTGT
TAGGAAATTGCTAATGTTGCATTATTGTTGATTATTGTTGATAATGATTA
ACAGAAATGACTTTTATAATATGCTATTTAAGCTTTTTCACAAGCAAGGG
AAACATAGACAACCAAATGAAAACTTATTTCTGTGGAAGTCTTCTCCTCC
AAAGGAGTAATTTCCTACAACAGGGCAAATatggaatttgaaaaaaaaca
cagtTTCTTATCAAAAATTTATCAGGAGACCTGTGGCCACACTCTTTACA
CGAATATAATATTTCTTCAGTTGTCTATACAACTCTTTGCTATAGTCTTC
CTCATCTGATATTTGTCATGCTTGTGTTAATAATTGATGAATAAGAAACC
TCAAGGATATTTCTTTTAACTTCCTCTTTCAATAATCTCGTTCACAAAAC
AATAATTTGTGCTAACTAGGAGgttactttcatttttttcctatATTCTG
TTTCTTCTACTGATAAGATATGAAAAGAGACAGAAAAGAGCACAAAAAGC
TCTCCCTAACTTCTTACACGTAcaaattcaaattataaaacATGTCTAAA
CCTAACAAATAATAACACTGATCATGATCTTCTTTTTCAGTGAACTTTGA
TGACATCACCAATGATGAAAACAGAGATAAGGTACACAGAGAATGCTAAA
TTAACTTTTTACTCTCTGTGGAAATATTTAACTTCTCAATCttaacaaaa
ataattaaaCTTAGAAATTGTTTCATATAGATGGCATCAGATAATATAAA
AACTGAAATTCCACAATTCTGAACATTTAAAAATAAGTCTTTGTTTTTTG
AACCTACCTCAGAGGTCCTTTGAATTAACTGCTGTGTTcttccgttcgtc
tgttaccagcttttctcaagattggctcattagttttttctgattttttg
cacaatgatgcaaaatggcaatatctAAAATGGAACAGAgcttgattttt
gaagaaaaaaatttctggcCAAAATGttggaaatatgctggaaaaccagt
tttttggcattttcttgatATTTCATTATTAGTTATTcccgattttttgc
acaaagacgcATATTAGTAATGCCCATAACGTGGTCAATTcggatttttg
ggaaattttttttgctatataACTTTCatcaccaggtaggtccattcagc
atctagcttgttttgcCTACTTGTAAGAGAAGTTACAACTACAAGGGTAA
TAACAATCTGCTATTTGCACAATTTTGTGACAAACAGTctactttctttt
tattgattatcTTTAGCTCATCAAATATGAAACTCCAGTTGCTATCGCCG
CTGGCTTTGGAGTCTTGTTCATGCTTGTTATGCCTTTTGTTGGCTTGTTC
TTTTGTTGTTGCCGATGCTGTGGCAAGTGTGGTGGTAAAAGATATCAAAG
TCAGAAAGCGGCAGATAGACATTCTTGTTGTGTTATTATGACCGTGATTT
TGTTCATCATTTCTGTTATGATGCTGTAAGTAGCCAACTAATTCTAACAC
TGGATCGTTAAACCTATTCCACAAAGACATTTGCATGAGAATTTACTCTA
GTTAATACTTTGATAAACAATTTATCTTTCCATTTTCCAGGTGTGGTTGT
ATGTTCATGTTTGTAACAAACAGCCGAACACATGAAACTGCCCAAGATTT
AAGCTCCACCTACAACAAGGCTGTGGATTCAGTCGTTGGTGTTGTCAATT
CTACAAAAAATGTATGTACAAAATCTTATTCTTATTTTCTCTTGCTCTAG
CTTTGACCCTTGAAATACATTTAAATACTTCAgatggacatgttttttaa
ttgtttcgtttttagGGGTCTTGGGAAATCATCATTCATTTCTaatataa
tgaataatgaacTAAAATTATGCCCTGATGATGGTTGCGTGGAAAAGATa
aactttaaaactttaaaagaattttttctaaagcttaaatctgTCATGAC
TTATGCTTCAACAAAGTGCGGTCCAAAAATGAGCCAATACTTAGCATTTT
AGTNTTAGAGTTCTTGAAGGCCATGTCttttgctaaaatttgaaaaacct
gAAGGTTATTGTTATTTCATAGCTCATTCTAGGTGCTATTTGATGCTTGG
ATCATCCACGaagcttaaaaagttttttctgtgATCTTTGTCATAgttaa
aaatggaccaaaaacgagcagtattttagcattttaacggaaaatgttaa
atatttgcTCGATTCTGGACCCTGAAAAGCTTTTGAACATCAAATAAGTT
ATCATTAATGTTTGATACACAATTGAACAGAACTTCATGAGGTTATTTTA
TGTTCCTAGGTCTCAAAATGAgctgaatttagcaaaaattagaCTAGGTG
TAAAGTTAATTTTAGTAAGAGAAGCAGAATAAATTGCAGtttttccagtg
gaaaatgctaaatttagctccaaacgGGCCCTTTAACAGCTCAAATGTTT
TATTGGTGTTAATAAATTGATTATTAAACTACTTCAAAggaagttatgaa
ggttttacACCCACTCCAGCCTTTTAGTTAGGTGTTTAGAAACATACTAG
TAATTCTGCTGCAgtatttttagtggaaaaatgctaaatttagctccaaa
cgGGCCCTTTAACAGCTCAAGTGTTATATNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TCTATGAGAATCATTGGTCAGATAGACAACTTCCTGGGTTTTTAGCTCTG
ATTTAGATCATTTTCCGAAACACATACAAATGCTAAAATTTGCTCCTAAC
TTGCCCCTACAACAGCTAGAGTTTTGGGAAAAGAACTTTTTGGGGTCCTA
TCATCACTACtaacatcctgtgaaaatttcggacctccaagttaccccaa
tcaaaatttagcttttttgaaaatgccNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCAGATAAGCTATCCAGATAATGTATCAAAA
ATTGGATGATTTTACTTTTAGGTTCTGGAATATGATATAGCTGGGGAGTT
TGTGCCATGTCTTTTAGATGCTATCAAACATGAGCTTGGTCCTTATGGTA
TCAGATCAAATTTTGGTGATCCCTTACAGAAATTCATCAGTGATAATGTA
ACTGCTGCTTTAGATACTGCAGATGATATGGCAAAAAGTAATCATTCATA
TTTTAATTTGTGTTCTTTTATGCATTAGTTTTTGAATATCTCTTTTACAG
CTGTATAGTAATTCAGGAGCTAAAAATAAGTAGACTCAAATTTACCAAGA
AATGCAGAGAAATGTTTTTCAACTTTCCTGTGTCCATAGTTCAAAGAATT
TTGTCATTCATTTTTCAGGGGTGGATACTTTAAAGGTAGATCTTGATGCT
ATAAAAGCAAAAAGTGATGATCTTAAAAGTGATGGATCAAGCCTGAACAA
CAACTTGACGACTATAAGGGACACTGACcttgaaaatgcaaaaattggAT
GTGGAGGTGAACCACAATGTGTGGCTTTGATTGATGGCTTTAAGAACAAA
ATTACAATGGAAGTGAATTTTGACAACCTGCCTGATATTCAGTCTTCTAT
TGATGAAGTTGATGAAGCTGTCTCTCTAAATATTTCAGAACAAGTACAAG
TTGTAAGTATATATATTGTTTGATCTTGCATTGAAATTGTGGATAATTCC
TCTTCAGTCACACCCTGCATGAATTTATTCCTGGAATGACGTGGCCATCA
TACAAATATTAAGCAGTGATTGGACAAAGTTGAATCCATTGTGTAAAAAT
ATTGGGcatagtttttttcaaaactgttaTTTTTACTTTGTGACATAACG
CCAAAAAAATgctcaattttcatcaaaatcattgtgtgacgtcaattttg
gaAATAGATAGCTTCCACAGAATATTCGAAAACATTGGAAGTAAAGACCC
AATCAAATGTCACTATTTNAAGCTTCCACGGAAGCtaaatattcgaaaat
attggaagTAAAGACCCAATCAAATGTCACTATTCACTTGCGTCAGATAA
TACACAATATGATTGTAGACTACAATTTCAACCGAAAAATGGGTGAAATT
TTATAATTCAATGACCTGCCTTTTCTTTAGATGGCATTGAGCCATTCCAT
ttcatatccatacagggggtggacaactttttccagggggtaatcagaga
agaatttccaggggtatAAAggagtattttcattttttccagggggtaaa
aggtTGTTTTGGTTCTTCCACCTTCACTTTTAAGGTTCTTTTGCAAACTT
TGCAAGGTTCTAtttgccttgaaaaggttcATCCACCCCCTTTGATGGAC
CAGCCCATTGTTTTCAGTATATACAATATGTGTACTTCAGTTGAAACcaa
catattcaattttgacaTTACAATGTCTTGGAAGAGACGTACTTAATGGA
ATTCAAAGCCAGGTCCATCTTTACGAGTCAAAGTTTTAAGAGAAGACGAG
CTTGATCTTCAAATCAGATATTGCACTTGATTGCAGTCAGtgataaagat
ttttgaaaagagtAGCTATTCTATCAttaaagtttgaaagaaattgtGTG
ACTGCATCTTTCTTGAAATATGCCCATCTCACCGaatccttttgaaaaaa
tagcatGCTTTAAAAAGGGGTGTTAGATTTATACATTTAGaagatttttt
atgaattgCTTGGTTTtacaaattatgaaaaataccTTTAGAAATTATTT
CCCTCTAACACATGACAAATATTCATTGAAAtcttaagtttttgaaaatc
ttaaaaataatttgtatcaaaaatgtcaaaaaggaCCCAATTTGATAAAG
AGTTTTTTCGTAGTTTTATTCTTTtccaaaattgaatttaaaagcTTCAT
AGGCTGGACTCATAAAAGTGTTGGTCACGTGACCCTTGATTTTGGAGGTG
GTTTGGTCGGTCAGAAAAGTTTTGATTATATAATCACAAATTATAGTTAC
GATTGCAATCCCATTTCTCACTTTTTCAGGgaagaaaaactttgaaggaT
ATCCCAACAACCGTTCAAACTAAAGCTCAATCAAGTGTAGACTGTAAGCT
ATTCATTTTCACAGAATGGTTCATTCTTGTACACATTTCGTTGCTTTTTG
CTTTACTCTTTGTTTATACTCTACCAAAAAATGAAAGGTCTTTAGATTTT
TATATATATGTAGGTTTTTCACCATAAATATCCTCAATATATTTGACCAA
AACAGTAAAACATGGGCTCAATGTGTTTgtgttttgaagaaattgataaa
agttttttattttgtagcgGTTCTCAGTTCAATAAATGATATTCAAGGAG
AGCTGGACAAAGAAGTCAACAATATTGTGAAGAGTCTTGATGATGTAAGA
ATACCCTTTGTTTATCCTGGCAATTCTTTTAATGTCTGATTTCTGGAAAA
GATTTTCGATGAAACTTTAACTCAAGTTAAAAAATGACAATTGTGTCATA
TCAGAATTAGATTTATTTACTTAATAGCATTTTTTTCCAGGCCATCACAA
CTCAAGAAGCAAAATACAAAGActatgcaaaatattttgatcaatcaaat
gagaacttcaaataTGAAAATTACAGGTAGATTTGTTATGTTCAAATTAA
TGGCCACTGTTTTTAGATTTCAATCACAATTGAATGCTATCAAATGGCGG
GTCTCTTTGTGTTTCCATTCCAAAACTCTCAAGACAGAACATTTCTTAAC
TTGTCAACTCAGCACAATCTCTAGTTGTGTGTTAAACTCTGCAGCTTTTG
TGTTGTTTATGCAACTATTCCAATTATTTTTGCAGTTTCACCGCTTAATT
ATTCTACCAGAATTTGCAATTCTTGGGATAAGATCCGACCACAGGGTCTC
AAAACATATCACCCTAAGATTAATATacaatgataattttttaaggATAA
TTCTACAAGGATCTAGTCGTAATTATAATCATCACACCTTTGACGGACAG
AGTGTTATTTAGAGGGCTCGTATGAATAAAAATGATGACAAATTTTTGTT
GATTGTAGATACTACGCATATATTGGGTTGTCTGCTTTGATGGCATTTAT
TGTACTTTTGTTATTTGGTGGACTTGCTCTTGGAATATGTGGATACCATC
GAGAAGATTCTCCGTCCAACAGAACAAAAAAGGCCACGTGTGGTGGCCAT
TGTCTTATGGCGTAAGAAATTCCATCATTTTGTCTTTTGTCGTTATGTAC
AGTATTATTTGAAATGCCTTTTGTTGGGTACCTTTTTGGGTACTTATTTT
CGATGAATTTTTGGTCTAGAAGTAGGGGTTTgttatattttggaaaaatg
gtgttttttgttttgaaaatgaacaaaataaatttctttttaggtCTGTT
GGATTCATGTTCATTTTCGCTTTCTTCTTGATGTTGTTTTGCACCATTTG
GTATGTGCTCGGCATCCATCTCCATTTTGTATGTCGAGACTTGAAAGATG
CAACCTTACTGGACACAATACTCTCCGACCAAATGAATTTGAAACTTGAA
GATAATAGACCTGAAGTATCTGTTCAAAACACTTTGAACAATTGTAGAAA
GAACCTTCCATTATATAAAGCTCTTGGTGGAGAAACTGTTTTCAATATTA
CATCCAAATTCAACTTCAGAACTGTAAGATTTCATTCTTAATTAAGTCCT
ATATATTAATTCTTATTTGAATGATGGTTATTCTTTTCATATCTCATTCT
ATTTTTATAGCTAGCAGACGATATTGATTCAAAGCTAGATGGTATTTCCA
TTGACTTGACCGATCAAGTTCTGGTCACACAAGACGTCCAGGATGCTTTG
AACAATTTGAAGACCAATGACGTTAGCTCCATCAATTTCACAGAATTCTT
TGCCATTGTAAGTCTTTGTCTACCAATCATAGGGAATGTTTTGTCACAAT
GAAAAAATAGCAATAGTAGAGCTGGATTTAAAGTTCAGTCATGTAAAAAT
TATCACagaactttttatttgaattattGATACTGCGAAATGCGTTTTAG
CCTTGAAATACATTCTTGTAATTTTACTTGCAATTTCAGCTTGACGAATC
CATCACTAAATTCAACCTGACAGAAGTCGCCAATAATGTGACTGCTGCTG
CTCAGAGTCTTAACGCTACGAAACCGGTATGTTCAAAGACTAAAATTTTC
TATAATAAATTGTGTTAGTTTTATAACATCAAAGTGTTGAGTCTGAACGA
TTTCATGTTGTAATTCAATTTTCcttctttctctttttcaaaGAGTACAT
CCAATGAATTACTTGCCATTGCCACCAAATTGAAGACTCTTGATTCATTA
ACCATCCCAAACATCATCTCCAAAGCTGTAAGCAGTACTATTTCATGTTT
TCATTCACACTGAATAAACTTTTCTTATACTACCGGTAGGTTGTGACATG
AAAACCTAGTAAGGTGTTCCAAAATATCAAATGTTTAAATGTGATgtcta
atttctttttcacactgagtgattatattttatatttcaaagatctttgt
tttgaattttcatattttatttaCAGAATGCAATCAAACCTGACGTCACA
AAGGTTCAAAACCTGGCTGTCACTCTGCAGGTAAACCAATACCTTCATTA
TACAGGGCAGCACTGATGTGCCCTAGACATAAATATTACTTTATCGATTG
AAAATTCACATGATAATATGTGTTTAGGCATTTCTCTAGACCACTGATTT
GANCAGCACTGATGTGCCCTAGCCATAAATATTACTTTATCGATTGAAAA
TTCACATGATAATATGTGTTTAGGCATTTCTCTAGACCACTGATTTGATA
GTGCGCTGTGGCTATTCCCAGTGCTAACTTTCACATTATCCACATTACCT
CATCTTTTCTTCTCTTCAAGGATGACGCAAGTGTACTATTGGATCAATTG
CTTTCTTCCGAATCCTTCATTCAGACGAAAACTGCTGGTGAAGTTATTTC
AGTAAGTGCTgcaaattgaaaaatgtttagCTTTGAAACTCCCAaaggat
ttatttatttaatgttGTTCGATTGAATGATTTTTGATCCTTCCAGTTTG
TCAACCTTTAATTACTTtatcttcacttttttttcagtTGGTTTCAAAAT
TTGCAGCTCTCATTTTGGATTGGCTGATGGAAGGCACTGAGTTTTTGGTC
AACCAGGTACTCCTTTATGGGCAGAAAACACCTTCAGCTATTTTTCTCAA
GATGCTTCCTTCTTGTAGAGTGCTGCACCAAAAACATATTTTATTTCGTC
CCTTCTACGTAACAACTCCACCTCATTCATTTGGTCGAATAATAAAGGAA
CAATCCCATATagtgataaaataaaaacccatggTCACCACTGGATTATC
ATGTTGGCGTCCATTGAGAAAGAAGCATTCTCAATAGCCTTCCACGTTGA
TCTCCTCTTATTGTAACTTCAAACATTCACAAgtatttaaaattcaaaac
aaaatttctttaggCGTTGAACAATATCCTGAAATGTAAGCCGATCTCCG
ATTTATATGATGGTTTGGTTTCGACTTTGTTATGTGATGATATCGTTCAG
AATGCTGTAAGAAAGAAATCACTTCTCTTccaccatttttctttttcatt
atcTGCGCAGCAACAAAGCAGCTCGTATTGTAAATTCTCCTTTGATAGGT
GCGATcgggaaaatttcttttcaacgaTATGTAATAAATCCTTTTTGATC
TTTGTCTACAAATCTTACATTGATTGATATCTCATTCACTGACTTCTTCT
CCTTTTCCTTTAGAATGGTTTCTGGCTGGGATTGGGCTGGTGTTTGTTGT
TCTTCGTTCCAGCCATCATCTTGGCCGTCAAGTTGGCCAAATATTACCGA
AGGATGGAATACGACTCAGGGTGAGGATGCCATGTTGATTTGATGTCTAA
TGAATGTCATTGTAatggataaaataaaatacaaaatgaccATAATCAAC
CTCGGCGAACTGAACTTTCCCCTTTTTGATGTCCTTGTTTACTGTCTAGA
ATCTCAGACAATgattcttctttcttttagtCTGGATCAATTCGAGCACC
CACCTTACAACGACAAAATCCCTCTACAAACGTAAGATGACTTAATTTGT
TTCTTTGACTTCTAGTTtatattttctcaaatattagcCCGGTGTGCCAT
TGTAAACAACTATTTATGCTTTATCAGATGTttatgttttcttcttttta
acacTCACTAACCAACACAACTTAACCTTGTTGAACAGAACAGGCTTATC
ATACTCATCCCTCTCTCACACTTGTTCCCGTCACGACGGAGTGTGCTATT
CTCCTTAGTATGCTTCGCCTGTCTCTGTTCGTTTTAACACGACGCACATA
CACACAACCTTTGGCACTTTTTGTTCTGGCTCTCTCCTTATTTATTGAAA
GACAGCTTTAACTTGTATCAAAATCTGACCGACCTTGAACCACCTGATCT
AGGTACGAAACAACGGAGGGCGGTGGAGGCGGACAGGAAAGAAGTAGTTT
ATATGGAGGTGGTGGAGCGCATGGGCGCGGTTATGGAGGAACAGATCCCA
TGTTGATGGCTGATGATCTAGAGTAGGTCCCGATTCTTCCTTCGCACCTC
CTCACCTATGAGTACCTTTCCTtttctttcattcattcattcattcattc
attccctCTACCACCTATCACCCGAACATAAGCACTTCACCTTCACTAAC
ACTTACACTCATTTAGTAATATTAGCTTCATTTTATTAACTTTGACTACT
ATCGTATAGTATTTATTCGATTTAATTAATTGACGAATAAGGAGTTAAGA
GTCAAAACTACAAAATggttcgaaatatattgagaattttgattattttc
tcgtttttcgaaatttgaagtttaggcgagaaagtcgcttgtGCTTTATG
TTCAATGtgatcgaatatttcaatttgggagcgTTTTATGGACTTACAGG
ACCATATCGACTTTCATGGTATAAAATCATTACtatcaaatattacgacc
atgaccATGTAGCTTGCCCTTTAACCCACTTCTAAAACTAATGACATACA
ATACTGTACAACACTTGACTTACGcatgattattattattattgtgtTTT
TGTTTCTGCATGTCCCATGCTGTTCATGACGTACTCTAAACTttagtttt
atttcattgttcCGGTTATTTGGGTGTTCCGTATGAAAATTCACGTCATG
AATGTCCGAATTTCTTTCATTTAACGTTTTATTTTATGCttacgtttttt
tgtaagaatgcATGTAATCTGAAGCATGGACGATATTACAGGGTTCGAAC
GAGGGCCAGTTTTGTAATTATgttcatttattttgaaaacaatcaaGCAT
TTTGACATTCGCTAATTCGAACGCAAACTTTGatcttgtttaaaaaaagg
gagGCTCAAATCAAAGAAAGGCGTggttttcttttcactttttcgtGGTT
CGACTTACAAGAATATTCAATGTAGAATAGAATTAGCGAAAGTCCACTAA
GTTATATTTTGTTCTTGTGCTGCCAACAAATCTTTGAACCCAATTTTACT
TGTAGGTATGATCACCACCCACCACCACCCTACCAAAATCAAGGTTACGC
CAACCACTGAGATATAAGAGAGGGTCGAATGATATTTAAATGAAGAAAAT
GTTTGCATCTGCTTCAAGCTGATTATAATGGCTATATTTAGTCTTGAGAT
TGGaagatttttagaaagaaaaatgacaaCATATGTATTGGGTGAGGATG
ATCTTCTTGGGTGTTGGTCACGTTGTCGTTGGATAGGTCCCATAGACCAA
TCAAATCGTTGGATAGGTCCCATAGACCAATCAAATCGTTGGATAGGTCC
CATAGACCAATCAAATCGTTGgatattttgtaattattttaaaatcaagC
ACTTTTATAAACATTGtagattttctttttatcaCTCAAACTCAGATCAA
TCGAAAGTTTGATGCTCTTCTAAAATTGTCACCCAATTATTATTTCTTGA
TGATTCAGCAAATCTGTATTTCTTTCTCTGATTTGGTGTTTTAGAATTTC
GTAAAATCCGCTAAATTTGTAtgatatttaaatattttggtttttattta
gtattatttcTATAATGTTCGTCTCGCTGGAATGCATTACATTTAATAAG
CccttttactttttatatttttgtaatgtCTTTCTGTGTTCCAAACTTCT
GCAAGGGAAATTGTGCGCCGAAATAGTTCGCTTTCATCATGTCCCTGTGC
TGACTCTCTCTTTCACTTCAGAGACAGTGGGTCGGGCAGGAACACCAAAC
CTTTACTCACTTCTGTACTGGAGTTACCGGGGTAattcttttttgtcatt
ttataaatACGTTGTTTTGAATTATTCGCgtgttttatttgttttatttt
ttttagagtAGAGTTTTACTCATCATAAGTACGTACTGAGAGGACTGAGA
GGATAAGTCTGTCAGCAGTCTCTACTTCTAATACTTGTACAGTGCAAATT
TTAATGAGAAACTAAAGATAATACTATGCTTGTAATAATTTGTGTTTTGC
TTATCTTTGATACCTTTAAGTCATCTGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004583	XLOC_004583	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000082	supercontig	sc0000082:614039..626616 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.98626	6.61235	16.5024	16.4433	145.336	101.456	88.4606	92.0257	81.0221	96.5228	66.2746	60.334	56.5146	54.1274	45.8598	46.5603	44.8263	52.9589	68.6246	91.6798	52.6768	61.4	39.0703	45.6121	65.9945	77.4373	123.757	119.57	88.2239	78.7962

Blast

[Close]

BLAST of TCONS_00008132 vs. Swiss-Prot (Human)
Match: PROM1 (Prominin-1 OS=Homo sapiens GN=PROM1 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.582e-36
Identity = 182/752 (24.20%), Postives = 334/752 (44.41%), Query Frame = 3

Query:  441 KLIKYETPVAIAAGFGVLFMLVMPFVGLFFXXXXXXXXXXXXXYQSQK--AADRHSCCVIMTVILFIISVMMLCGCMFMFVTNSRTHETAQDLSSTYNKAVDSVVGVVNSTKNVLEYDIAGEFVPCLLDAIKHELGPYGIRSNFGDPLQKFISDNVTAALDTADDMAKRVDTLKVDLDAIXXXXXXXXXXXXXXXXXXTTIRDTDLENAKIGCGGEPQCVALIDGFK-NKITMEVN-------FDNLPDIQSSIDEVDEAVSLNISEQVQVGRKTLKDIPTTVQTKAQSSVDSVLSSINDIQGELDKEVNNIVKSLDDAITTQEAKYKDYAKYFDQSNENFK-YENYRYYAYIGLSALMAFIVLLLFGGLALGICGYHREDSPSNRTKKATCGGHCLMASVGXXXXXXXXXXXXCTIWYVLGIHLH-FVCRDLKDATL---LDT--ILSDQMNLKLE-----DNRPEVSVQNTLNNCRKNLPLYKALGGETVFNITSKFNFRTLADDIDSKLDGISIDLTDQVLVTQDVQDALNNLKTNDVSSINFTEFFAILDESITKFNLTEVANNVTAAAQSLNATKPSTSNELLAIATKLKTLDSLTIPNIISKANAIKPDVTKVQNLAVTLQDDASVLLDQLLSSESFIQTKTAGEVISLVSKFAALILDWLMEGTEFLVNQALNNILKCKPISDLYDGLVSTLLCDDIVQNANXXXXXXXXXXXXXVPAIILAVKLAKYYRRMEYDSGLDQFEHPP 2630
            K++ YE  + +    G+LF+++MP VG FFC CRCC KCGG+ +Q QK        C     + L +I +++  G  + FV N +     +      +     +  ++N T   ++Y +A        D    +L    I S  G  +   +  N+   LD    MA  +   K  L+ + +    L    + L+++LT+++ T L ++      +P C+        N I + ++          LP + + +D V+  +  ++   VQ G ++L DIP  VQ +  + V  +   +N I  ++D     +   + D ++       +   Y  ++    + Y++Y +   + + +L+  IV+  + GL  G+CGY R  +P+ R   +  GG  LM  VG  F+F + LM+   + +V G ++   +C       L   LDT  +L++     L       ++ +++ +   ++C+KN   Y  L  +  FNI+   N       I S+L+ + ++L +  L+    +  L +     +  +N+  + A   +S    NL   A ++ A A SL     +  N L   A  +KT+    +  I    + +   V  +Q     L +  + +L  L  +++FI   T+  +I    K+   I+ +     +++       +  CKP++   D  V   LC  I+   N FW G+G   +F +PA+I AVKLAKYYRRM+ +   D  E  P
Sbjct:  101 KIVYYEAGIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRKC---FAISLLVICIIISIGIFYGFVANHQVRTRIKRSRKLADSNFKDLRTLLNETPEQIKYILAQ--YNTTKDKAFTDLN--SINSVLGGGILDRLRPNIIPVLDEIKSMATAIKETKEALENMNSTLKSLHQQSTQLSSSLTSVK-TSLRSSL----NDPLCLVHPSSETCNSIRLSLSQLNSNPELRQLPPVDAELDNVNNVLRTDLDGLVQQGYQSLNDIPDRVQRQTTTVVAGIKRVLNSIGSDIDNVTQRL--PIQDILSAFSVYVNNTESYIHRNLPTLEEYDSYWWLGGLVICSLLTLIVIFYYLGLLCGVCGYDRHATPTTRGCVSNTGGVFLMVGVGLSFLFCWILMIIVVLTFVFGANVEKLICEPYTSKELFRVLDTPYLLNEDWEYYLSGKLFNKSKMKLTFEQVYSDCKKNRGTYGTLHLQNSFNISEHLNINEHTGSISSELESLKVNL-NIFLLGAAGRKNLQDFAACGIDRMNYDSYLAQTGKSPAGVNLLSFAYDLEAKANSLPPG--NLRNSLKRDAQTIKTIHQQRVLPIEQSLSTLYQSVKILQRTGNGLLERVTRILASLDFAQNFITNNTSSVIIEETKKYGRTIIGYFEHYLQWIEFSISEKVASCKPVATALDTAVDVFLCSYIIDPLNLFWFGIGKATVFLLPALIFAVKLAKYYRRMDSEDVYDDVETIP 835

The following BLAST results are available for this feature:

BLAST of TCONS_00008132 vs. Swiss-Prot (Human)

BLAST of TCONS_00008132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PROM1	1.582e-36	24.20	Prominin-1 OS=Homo sapiens GN=PROM1 PE=1 SV=1	[more]

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TCONS_00008132 (transcript) - C. hemisphaerica