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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008131 ID=TCONS_00008131|Name=TCONS_00008131|organism=Clytia hemisphaerica|type=transcript|length=3826bpRun BLAST on NCBI protein sequence of TCONS_00008131-protein >TCONS_00008131-protein ID=TCONS_00008131-protein|Name=TCONS_00008131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=853bp MDTAFLTCCILLLSQCSFIFGARCNKQLIPDQNKNIKFEDLNGDIEPTKLRun BLAST on NCBI transcript from alignment at sc0000082:608632..626616+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008131 ID=TCONS_00008131|Name=TCONS_00008131|organism=Clytia hemisphaerica|type=transcript|length=17985bp|location=Sequence derived from alignment at sc0000082:608632..626616+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000082:608632..626616+ >TCONS_00008131 ID=TCONS_00008131|Name=TCONS_00008131|organism=Clytia hemisphaerica|type=CDS|length=53802bp|location=Sequence derived from alignment at sc0000082:608632..626616+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008131 vs. Swiss-Prot (Human)
Match: PROM1 (Prominin-1 OS=Homo sapiens GN=PROM1 PE=1 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.890e-36 Identity = 182/752 (24.20%), Postives = 334/752 (44.41%), Query Frame = 3
Query: 588 KLIKYETPVAIAAGFGVLFMLVMPFVGLFFXXXXXXXXXXXXXYQSQK--AADRHSCCVIMTVILFIISVMMLCGCMFMFVTNSRTHETAQDLSSTYNKAVDSVVGVVNSTKNVLEYDIAGEFVPCLLDAIKHELGPYGIRSNFGDPLQKFISDNVTAALDTADDMAKRVDTLKVDLDAIXXXXXXXXXXXXXXXXXXTTIRDTDLENAKIGCGGEPQCVALIDGFK-NKITMEVN-------FDNLPDIQSSIDEVDEAVSLNISEQVQVGRKTLKDIPTTVQTKAQSSVDSVLSSINDIQGELDKEVNNIVKSLDDAITTQEAKYKDYAKYFDQSNENFK-YENYRYYAYIGLSALMAFIVLLLFGGLALGICGYHREDSPSNRTKKATCGGHCLMASVGXXXXXXXXXXXXCTIWYVLGIHLH-FVCRDLKDATL---LDT--ILSDQMNLKLE-----DNRPEVSVQNTLNNCRKNLPLYKALGGETVFNITSKFNFRTLADDIDSKLDGISIDLTDQVLVTQDVQDALNNLKTNDVSSINFTEFFAILDESITKFNLTEVANNVTAAAQSLNATKPSTSNELLAIATKLKTLDSLTIPNIISKANAIKPDVTKVQNLAVTLQDDASVLLDQLLSSESFIQTKTAGEVISLVSKFAALILDWLMEGTEFLVNQALNNILKCKPISDLYDGLVSTLLCDDIVQNANXXXXXXXXXXXXXVPAIILAVKLAKYYRRMEYDSGLDQFEHPP 2777
K++ YE + + G+LF+++MP VG FFC CRCC KCGG+ +Q QK C + L +I +++ G + FV N + + + + ++N T ++Y +A D +L I S G + + N+ LD MA + K L+ + + L + L+++LT+++ T L ++ +P C+ N I + ++ LP + + +D V+ + ++ VQ G ++L DIP VQ + + V + +N I ++D + + D ++ + Y ++ + Y++Y + + + +L+ IV+ + GL G+CGY R +P+ R + GG LM VG F+F + LM+ + +V G ++ +C L LDT +L++ L ++ +++ + ++C+KN Y L + FNI+ N I S+L+ + ++L + L+ + L + + +N+ + A +S NL A ++ A A SL + N L A +KT+ + I + + V +Q L + + +L L +++FI T+ +I K+ I+ + +++ + CKP++ D V LC I+ N FW G+G +F +PA+I AVKLAKYYRRM+ + D E P
Sbjct: 101 KIVYYEAGIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRKC---FAISLLVICIIISIGIFYGFVANHQVRTRIKRSRKLADSNFKDLRTLLNETPEQIKYILAQ--YNTTKDKAFTDLN--SINSVLGGGILDRLRPNIIPVLDEIKSMATAIKETKEALENMNSTLKSLHQQSTQLSSSLTSVK-TSLRSSL----NDPLCLVHPSSETCNSIRLSLSQLNSNPELRQLPPVDAELDNVNNVLRTDLDGLVQQGYQSLNDIPDRVQRQTTTVVAGIKRVLNSIGSDIDNVTQRL--PIQDILSAFSVYVNNTESYIHRNLPTLEEYDSYWWLGGLVICSLLTLIVIFYYLGLLCGVCGYDRHATPTTRGCVSNTGGVFLMVGVGLSFLFCWILMIIVVLTFVFGANVEKLICEPYTSKELFRVLDTPYLLNEDWEYYLSGKLFNKSKMKLTFEQVYSDCKKNRGTYGTLHLQNSFNISEHLNINEHTGSISSELESLKVNL-NIFLLGAAGRKNLQDFAACGIDRMNYDSYLAQTGKSPAGVNLLSFAYDLEAKANSLPPG--NLRNSLKRDAQTIKTIHQQRVLPIEQSLSTLYQSVKILQRTGNGLLERVTRILASLDFAQNFITNNTSSVIIEETKKYGRTIIGYFEHYLQWIEFSISEKVASCKPVATALDTAVDVFLCSYIIDPLNLFWFGIGKATVFLLPALIFAVKLAKYYRRMDSEDVYDDVETIP 835 The following BLAST results are available for this feature:
BLAST of TCONS_00008131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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