TCONS_00008130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008130
Unique NameTCONS_00008130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1162

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008130 ID=TCONS_00008130|Name=TCONS_00008130|organism=Clytia hemisphaerica|type=transcript|length=1162bp
ggctaatacagcagaattaagacaaaaaagggaactttcaaaaacatttt
cccaaaatttaataagcgggggggttggaataagaatgtcctgggtggaa
aattttcgaaaaattaattagcgggggggggacggctattaggtacccga
gagtacccaTAACAATCCAAAATTTCCCTTAAGTTAATTAATTCACATTA
AATCATTTCAGTGGCTAATTTAAAGAAACCAATGCAACAACAAGCAGAAG
TTGGAACAGTTGATTTCAATAGTTTCAGTGATGATggatcaaaattatat
ttcaaaaagctGTCTGAGAATGCCACGACACCATTGAGAGGCTCAAGAAA
TGCAGCAGGGTTTGACTTATACAGCGCTGAAGAGAAAACTATTTGTGGTA
GAAAGCATGATATGGTTAGTACGGATATAGCAGTAGCTATTCCAAAAGGA
AGCTATGGTCGTGTTGCACCAAGATCTGGCCTAGCGGTCAAAAAGGGGAT
CGATGTAGGAGCAGGCGTTGTAGACTATGATTATCGTGGAAATATCAAAG
ttgttctctttaatcatcTGGATGAAGATTTCGTTGTCAAGAAAGGAGAA
AGAATCGCTCAATTTGTTATCGAGAAAATCTTCATGCCAGAATTGGTTGA
AGTCGATACTTTGGACGAAACGGAGCGTGGAAGTGGTGGCTTTGGTTCCA
CTGGGAGGTGAtttgttttataaatttttctcTTAGTTTTTTGTACATAT
TCTTATTTATACATGCATAGGAAAAACCAGTTGATGAAATCATCGTGTAG
TTTTTTGCCTTTTGACCCCTTGTTAGTGCTACCTCATCTGGGGGGAAAGA
CGTTGTGGAAAAGCAACGAAAAAAATTAAGGAGTTATTTATCTTCGGGAA
GTTTCGAGTGTATCCAGGTATAGTAGTCTGAACTTAACGAGGCTTAACTT
TGGCAATCGCCATTTATAACTTTTagattccaaataaacgcccccccccc
ggaagttctttttcaaaattttcaatttcaacaatatttttcaatcgctt
aaagataggtagcttttttctaatggcccccaaaacggaggtttacaatt
ttagcgatttctcgagatatctttaagatatgaatacaaaattttgacca
tagtttggaaat
Run BLAST on NCBI

protein sequence of TCONS_00008130-protein

>TCONS_00008130-protein ID=TCONS_00008130-protein|Name=TCONS_00008130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MQQQAEVGTVDFNSFSDDGSKLYFKKLSENATTPLRGSRNAAGFDLYSAE
EKTICGRKHDMVSTDIAVAIPKGSYGRVAPRSGLAVKKGIDVGAGVVDYD
YRGNIKVVLFNHLDEDFVVKKGERIAQFVIEKIFMPELVEVDTLDETERG
SGGFGSTGR
Run BLAST on NCBI

transcript from alignment at sc0000082:530044..532888+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008130 ID=TCONS_00008130|Name=TCONS_00008130|organism=Clytia hemisphaerica|type=transcript|length=2845bp|location=Sequence derived from alignment at sc0000082:530044..532888+ (Clytia hemisphaerica)
ggctaatacagcagaattaagacaaaaaagggaactttcaaaaacatttt
cccaaaatttaataagcgggggggttggaataagaatgtcctgggtggaa
aattttcgaaaaattaattagcgggggggggacggctattaggtacccga
gagtacccaTAACAATCCAAAATTTCCCTTAAGTTAATTAATTCACATTA
AATCATTTCAGTGGCTAATTTAAAGAAACCAATGCAACAACAAGCAGAAG
TTGGAACAGTTGATTTCAATAGTTTCAGTGATGATggatcaaaattatat
ttcaaaaagctGTCTGAGAATGCCACGACACCATTGAGAGGCTCAAGAAA
TGCAGCAGGTAAAATTTGAGTCCAGTCTTTTAGGGGTTCTTCCAAACTCT
TTACCCTACCACTGTTTTCCTCCAGAACTTGAGTTTTGTTGAGTGACAGA
GGAAAACTTACATTTTTGCTATCATGTTTTTGTGTAAATTCTACACCCTG
GAGTTAATAATAATGGGGTTAAACAAGGGCCAGAGGAAAACCTTTTATtg
ctttttgcttttgttttcagATTTCATTATCACAAAGTAAAGTTTTACAA
ATTGAGTTTGAGTTGAGTTTCCACTATTTTCTCAGTTAGTAAAAAAGTTG
TGAAAGAATCCCTTGATTTTTGAGTTGGACTTTCTCTTTTATTATATGAA
TGGGAAGTTtaattcaaaatgttcttattattAGGGTTTGACTTATACAG
CGCTGAAGAGAAAACTATTTGTGGTAGAAAGCATGATATGGTTAGTACGG
ATATAGCAGTAGCTATTCCAAAAGGAAGCTATGGTCGTGTTGCACCAAGG
TAATGaccatttcaaattatttacaatcacagtgatctttcattggaaTT
TTGTAATTGTATTTTCTTAACCCTTTGCGTGCCGGTACCTTgtttttgta
ccccaatccatttgccgaggggtaattttttttagtaacctgatttgccg
atgtcgtatatataNNGTATACTTTCACTACTACTAGTACTATGGATTTT
Tttatgtcggatatatacgacattggcaaataagaaaaccattttcctaa
aagctgATTTCTCGGCAATAGAGCTTCCTCTTTTTTAAAGGCCTCGGCAA
TTAGGTAAAAAAATTagatgtcggatatatccgacattggcaagtagagt
gaaaatttgcatgtcgtatatatacgacatcggcacggaaagggttaagt
agtgctcataaggagatgaaatttggtataaaaagtctccttatagcaat
gtaaaagtaggaaaaattttttttgatacatcaaactgttcaccagttat
tgggaactttcgttttcgagagatccctctatcccgtcctcatcccggtt
gagatccctctaaatcggaatcaagataattccggataggaaagtgctag
agacttgaaaCTCTTACATAATGTACTTATATTtgtcctctaaaggataa
aagaaaaagaaagcatttcttctcagttattttactaaaatttggctaaa
acaaggaaatttgaatccgattaatccaatCAAGATCGCCGTGAATTCGA
GTGCTTTTTTAAATAAGATCGGTGCATCTAAAGTACAAATACAGGATTTT
TCAAATGGTCCACTAAACAAAATATCTATCATTATTCTTGTTGAGATTTA
TTTATCCAGCATTAGGTATTTGCTTAAAATTAGGTTTGAAGTTAACACCA
ATAGCTAAActatttcttattttgattAAACAGGTatgtccataaaagta
tcacttgttccaTTTAGATCTGGCCTAGCGGTCAAAAAGGGGATCGATGT
AGGAGCAGGCGTTGTAGACTATGATTATCGTGGAAATATCAAAGttgttc
tctttaatcatcTGGATGAAGATTTCGTTGTCAAGAAAGGAGAAAGAATC
GCTCAATTTGTTATCGAGAAAATCTTCATGCCAGAATTGGTTGAAGTCGA
TGTAAGTACAATTGAATTCATATGCAGTCAGAGTTTTCCGTTGTCCTGTT
TTCCCTATTAAGATACGCTGTCTTCACGAACGTACTATTAAAATATTAAT
GACGTTAATGGgtatacaaaaattaaaagagaaaatcaTTTATCATTTAT
TGACTTACAAACAAACAATAACCAGTAACAACACTATTTAGAAATTTGAA
GACTTGGAGACTCAAGTGTGATTATATAATTCAtcactttgatttcaaaa
cgaggcagtcgttgaagataatttatgaaaaggcctgtTTTGATCTTAAT
CTTTCCATCTAGTCATGTTTTATGCCTGTATTTCTTTTAGACTTTGGACG
AAACGGAGCGTGGAAGTGGTGGCTTTGGTTCCACTGGGAGGTGAtttgtt
ttataaatttttctcTTAGTTTTTTGTACATATTCTTATTTATACATGCA
TAGGAAAAACCAGTTGATGAAATCATCGTGTAGTTTTTTGCCTTTTGACC
CCTTGTTAGTGCTACCTCATCTGGGGGGAAAGACGTTGTGGAAAAGCAAC
GAAAAAAATTAAGGAGTTATTTATCTTCGGGAAGTTTCGAGTGTATCCAG
GTATAGTAGTCTGAACTTAACGAGGCTTAACTTTGGCAATCGCCATTTAT
AACTTTTagattccaaataaacgccccccccccggaagttctttttcaaa
attttcaatttcaacaatatttttcaatcgcttaaagataggtagctttt
ttctaatggcccccaaaacggaggtttacaattttagcgatttctcgaga
tatctttaagatatgaatacaaaattttgaccatagtttggaaat

Coding sequence (CDS) from alignment at sc0000082:530044..532888+

>TCONS_00008130 ID=TCONS_00008130|Name=TCONS_00008130|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at sc0000082:530044..532888+ (Clytia hemisphaerica)
ATGCAACAACAAGCAGAAGTTGGAACAGTTGATTTCAATAGTTTCAGTGA
TGATggatcaaaattatatttcaaaaagctGTCTGAGAATGCCACGACAC
CATTGAGAGGCTCAAGAAATGCAGCAGGGTTTGACTTATACAGCGCTGAA
GAGAAAACTATTTGTGGTAGAAAGCATGATATGGTTAGTACGGATATAGC
AGTAGCTATTCCAAAAGGAAGCTATGGTCGTGTTGCACCAAGATCTGGCC
TAGCGGTCAAAAAGGGGATCGATGTAGGAGCAGGCGTTGTAGACTATGAT
TATCGTGGAAATATCAAAGttgttctctttaatcatcTGGATGAAGATTT
CGTTGTCAAGAAAGGAGAAAGAATCGCTCAATTTGTTATCGAGAAAATCT
TCATGCCAGAATTGGTTGAAGTCGATACTTTGGACGAAACGGAGCGTGGA
AGTGGTGGCTTTGGTTCCACTGGGAGGTGAATGCAACAACAAGCAGAAGT
TGGAACAGTTGATTTCAATAGTTTCAGTGATGATggatcaaaattatatt
tcaaaaagctGTCTGAGAATGCCACGACACCATTGAGAGGCTCAAGAAAT
GCAGCAGGGTTTGACTTATACAGCGCTGAAGAGAAAACTATTTGTGGTAG
AAAGCATGATATGGTTAGTACGGATATAGCAGTAGCTATTCCAAAAGGAA
GCTATGGTCGTGTTGCACCAAGATCTGGCCTAGCGGTCAAAAAGGGGATC
GATGTAGGAGCAGGCGTTGTAGACTATGATTATCGTGGAAATATCAAAGt
tgttctctttaatcatcTGGATGAAGATTTCGTTGTCAAGAAAGGAGAAA
GAATCGCTCAATTTGTTATCGAGAAAATCTTCATGCCAGAATTGGTTGAA
GTCGATACTTTGGACGAAACGGAGCGTGGAAGTGGTGGCTTTGGTTCCAC
TGGGAGGTGAATGCAACAACAAGCAGAAGTTGGAACAGTTGATTTCAATA
GTTTCAGTGATGATggatcaaaattatatttcaaaaagctGTCTGAGAAT
GCCACGACACCATTGAGAGGCTCAAGAAATGCAGCAGGGTTTGACTTATA
CAGCGCTGAAGAGAAAACTATTTGTGGTAGAAAGCATGATATGGTTAGTA
CGGATATAGCAGTAGCTATTCCAAAAGGAAGCTATGGTCGTGTTGCACCA
AGATCTGGCCTAGCGGTCAAAAAGGGGATCGATGTAGGAGCAGGCGTTGT
AGACTATGATTATCGTGGAAATATCAAAGttgttctctttaatcatcTGG
ATGAAGATTTCGTTGTCAAGAAAGGAGAAAGAATCGCTCAATTTGTTATC
GAGAAAATCTTCATGCCAGAATTGGTTGAAGTCGATACTTTGGACGAAAC
GGAGCGTGGAAGTGGTGGCTTTGGTTCCACTGGGAGGTGAATGCAACAAC
AAGCAGAAGTTGGAACAGTTGATTTCAATAGTTTCAGTGATGATggatca
aaattatatttcaaaaagctGTCTGAGAATGCCACGACACCATTGAGAGG
CTCAAGAAATGCAGCAGGGTTTGACTTATACAGCGCTGAAGAGAAAACTA
TTTGTGGTAGAAAGCATGATATGGTTAGTACGGATATAGCAGTAGCTATT
CCAAAAGGAAGCTATGGTCGTGTTGCACCAAGATCTGGCCTAGCGGTCAA
AAAGGGGATCGATGTAGGAGCAGGCGTTGTAGACTATGATTATCGTGGAA
ATATCAAAGttgttctctttaatcatcTGGATGAAGATTTCGTTGTCAAG
AAAGGAGAAAGAATCGCTCAATTTGTTATCGAGAAAATCTTCATGCCAGA
ATTGGTTGAAGTCGATACTTTGGACGAAACGGAGCGTGGAAGTGGTGGCT
TTGGTTCCACTGGGAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004582XLOC_004582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008130-exon-sc0000082-1491911889:530044..530401TCONS_00008130-exon-sc0000082-1491911889:530044..530401Clytia hemisphaericaexon
TCONS_00008130-exon-sc0000082-1510915933:530044..530401TCONS_00008130-exon-sc0000082-1510915933:530044..530401Clytia hemisphaericaexon
TCONS_00008130-exon-sc0000082-1575043694:530044..530401TCONS_00008130-exon-sc0000082-1575043694:530044..530401Clytia hemisphaericaexon
TCONS_00008130-exon-sc0000082-1491911889:530778..530892TCONS_00008130-exon-sc0000082-1491911889:530778..530892Clytia hemisphaericaexon
TCONS_00008130-exon-sc0000082-1510915933:530778..530892TCONS_00008130-exon-sc0000082-1510915933:530778..530892Clytia hemisphaericaexon
TCONS_00008130-exon-sc0000082-1575043694:530778..530892TCONS_00008130-exon-sc0000082-1575043694:530778..530892Clytia hemisphaericaexon
TCONS_00008130-exon-sc0000082-1491911889:531861..532044TCONS_00008130-exon-sc0000082-1491911889:531861..532044Clytia hemisphaericaexon
TCONS_00008130-exon-sc0000082-1510915933:531861..532044TCONS_00008130-exon-sc0000082-1510915933:531861..532044Clytia hemisphaericaexon
TCONS_00008130-exon-sc0000082-1575043694:531861..532044TCONS_00008130-exon-sc0000082-1575043694:531861..532044Clytia hemisphaericaexon
TCONS_00008130-exon-sc0000082-1491911889:532384..532888TCONS_00008130-exon-sc0000082-1491911889:532384..532888Clytia hemisphaericaexon
TCONS_00008130-exon-sc0000082-1510915933:532384..532888TCONS_00008130-exon-sc0000082-1510915933:532384..532888Clytia hemisphaericaexon
TCONS_00008130-exon-sc0000082-1575043694:532384..532888TCONS_00008130-exon-sc0000082-1575043694:532384..532888Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008130-proteinTCONS_00008130-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:530044..532888 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
568.197	558.378	678.967	723.457	20.7091	19.2435	50.9436	55.0273	70.605	55.933	37.5668	43.4028	25.5649	23.3166	31.5706	32.1553	99.9645	76.1031	7.06793	6.53364	47.1645	42.1773	209.764	163.226	71.0838	77.6184	30.93	23.7147	68.4508	83.9567
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008181dUTPase_1
IPR029054dUTPase-like
IPR033704dUTPase_trimeric
Vocabulary: Biological Process
TermDefinition
GO:0046080dUTP metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004170dUTP diphosphatase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046080 dUTP metabolic process
molecular_function GO:0004170 dUTP diphosphatase activity
Blast
[Close]
BLAST of TCONS_00008130 vs. Swiss-Prot (Human)
Match: DUT (Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4)

HSP 1 Score: 155.221 bits (391), Expect = 7.323e-44
Identity = 78/127 (61.42%), Postives = 93/127 (73.23%), Query Frame = 1 
Query:  286 GSKLYFKKLSENATTPLRGSRNAAGFDLYSAEEKTICGRKHDMVSTDIAVAIPKGSYGRVAPRSGLAVKKGIDVGAGVVDYDYRGNIKVVLFNHLDEDFVVKKGERIAQFVIEKIFMPELVEVDTLD 666
            G +L F +LSE+AT P RGS  AAG+DLYSA + TI   +  +V TDI +A+P G YGRVAPRSGLA K  IDVGAGV+D DYRGN+ VVLFN   E F VKKG+RIAQ + E+IF PE+ EV  LD
Sbjct:  111 GMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALD 237
The following BLAST results are available for this feature:
BLAST of TCONS_00008130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUT7.323e-4461.42Deoxyuridine 5'-triphosphate nucleotidohydrolase, ... [more]
back to top