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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008129 ID=TCONS_00008129|Name=TCONS_00008129|organism=Clytia hemisphaerica|type=transcript|length=1751bpRun BLAST on NCBI protein sequence of TCONS_00008129-protein >TCONS_00008129-protein ID=TCONS_00008129-protein|Name=TCONS_00008129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp MGANTSSLEQDIGPVNEHFFGLINFGNTCYCNSVLQALFFCRPFREKVLARun BLAST on NCBI transcript from alignment at sc0000082:483579..503101+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008129 ID=TCONS_00008129|Name=TCONS_00008129|organism=Clytia hemisphaerica|type=transcript|length=19523bp|location=Sequence derived from alignment at sc0000082:483579..503101+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000082:483579..503101+ >TCONS_00008129 ID=TCONS_00008129|Name=TCONS_00008129|organism=Clytia hemisphaerica|type=CDS|length=12210bp|location=Sequence derived from alignment at sc0000082:483579..503101+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008129 vs. Swiss-Prot (Human)
Match: UBP46 (Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46 PE=1 SV=1) HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0 Identity = 272/372 (73.12%), Postives = 316/372 (84.95%), Query Frame = 2
Query: 29 MGANTSSLEQDIGP----VNEHFFGLINFGNTCYCNSVLQALFFCRPFREKVLAYKPLSKRKENLLTCLADLFNNIATQKKKTGVIAPKKFVTRLRKENELFDNYMQQDAHEFLNYLLNTIAEILQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFKTPPEPTWVHDIFEGTLTNETRCLCCETVSSKDESFLDISVDVEQNTSITYCLKNFSCTETLCSEQKYFCETCGSKQEAQKRMMVKKLPQILALHLKRFKYVEQQQRYTKLSHRVTFPLQLRLFNTSDDAINHDRLYDLVAVVVHCGSGPNRGHYIAIVKSHGFWLLFDDDIVEKIESHSLEDFFGLTTDVQKNSECGYILFYESRK 1132
MG N S+LE+DIGP +NEH+FGL+NFGNTCYCNSVLQAL+FCRPFRE VLAYK K+KENLLTCLADLF++IATQKKK GVI PKKF++RLRKEN+LFDNYMQQDAHEFLNYLLNTIA+ILQ EK++EK+ + + G+++ + PE TWVH+IF+GTLTNETRCL CETVSSKDE FLD+SVDVEQNTSIT+CL++FS TETLCSEQKY+CETC SKQEAQKRM VKKLP ILALHLKRFKY+EQ RYTKLS+RV FPL+LRLFNTS DA+N DR+YDLVAVVVHCGSGPNRGHYI IVKSHGFWLLFDDDIVEKI++ ++E+F+GLT+D+ KNSE GYILFY+SR+
Sbjct: 12 MGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAE-----------------NNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQSRE 366 The following BLAST results are available for this feature:
BLAST of TCONS_00008129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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