TCONS_00008128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008128
Unique NameTCONS_00008128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1891

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008128 ID=TCONS_00008128|Name=TCONS_00008128|organism=Clytia hemisphaerica|type=transcript|length=1891bp
TCTTAGTATTGCTACGGGATTATTATTTAGCTATAACACTGGGATCTCAC
GCTCCTCATTGTCCCgactgtttatcaaattttcttACTGGAAGAGCTGA
GCttctcaagtaaaaaaaaccaACATCATCAATCAGGAATTGTaTATTTA
AAGATGAACAGATAAACCATGGGAGCAAACACTTCATCGCTTGAACAGGA
CATTGGTCCGGTCAATGAACATTTCTTTGGTTTGATAAATtttGGAAACA
CTTGTTACTGCAATTCAGTGCTGCAAGCCCTCTTCTTCTGCCGTCCGTTT
CGTGAGAAGGTTTTAGCTTACAAGCCGCTGAGTAAACGCAAGGAGAACCT
TCTGACTTGTTTGGCTGACTTGTTCAATAACATTGCCACTCAAAAGAAGA
AAACTGGCGTTATTGCACCCAAGAAATTTGTAACCCGACTACGAAAAGAA
AATGAGCTCTTCGACAATTACATGCAACAAGATGCACATGAATTCTTGAA
TTACCTTCTCAACACCATCGCTGAAATATTACAAGGTGAGAAGCAGCGTG
AAAAGGAGAAGGATCGCGAAAGAATGGGTAGCGTGAGTAGTGTGAGCAGT
AAAACAAGCGCTAGCTCAGGTTATTCATCAGCTACCATGCACTCGACATT
TAAGACACCTCCTGAACCGACTTGGGTGCATGATATCTTTGAAGGGACGC
TCACCAATGAAACAAGATGTCTTTGCTGTGAAACCGTGAGCAGCAAAGAT
GAATCGTTTTTGGATATCTCAGTTGATGTAGAGCAAAACACCTCCATTAC
ATACTGTCTCAAaaaCTTTTCGTGCACAGAGACGCTGTGTAGCGAACAGA
AATATTTTTGCGAAACTTGTGGAAGCAAACAAGAGGCTCAAAAGAGGATG
ATGGTGAAAAAGTTGCCACAAATTCTTGCGTTGCATTTGAAACGATTCAA
ATATGTGGAACAGCAACAAAGATACACAAAACTCTCACATCGGGTCACTT
TCCCATTGCAACTACGTCTCTTCAACACTtCGGACGATGCAATCAACCAC
GATCGTTTGTATGATTTGGTGGCCGTCGTTGTGCACTGTGGAAGTGGTCC
AAATCGTGGTCATTACATAGCAATCGTTAAAAGTCATGGCTTCTGGCTAC
TTTTTGATGACGACATTGTGGAAAAAATCGAATCACATTCATTAGAGGAC
TTTTTCGGGCTGACCACGGATGTACAAAAGAATTCCGAATGTGGATATAT
TTTGTTCTATGAATCACGGAAAGTGTGAACACAGATGCATAAACATTCTT
GCACAGCGCTAGTCGCTACATTTACTAAAGCTCCATGTGAAAGCCTGGAA
ATGAATGTACAATACAAACTTGATGTGTGATGACTGTCCACACTGAAAGA
AATTATGATTGAAACCGATGAGGGATTTGAAATGAATTCCGAAGAGAATG
GAATCAAAGATCGAAAACAattcaataaaaacttttctctGCTTTTGTAA
AGTCTCTTTTTAATTCAGTAAAACAATTCGAGCTTTCGTAGGTTcgcacg
cttttttataaaaataatttcagacaAAACCTAACGGCAAATTCGGGCAA
TTGTGGCTTCATATTTCAAGAGATGACAGAGAGAATAATGacctgttctt
ataaaaaagcgtggaCTTTCAAACattgtaaataaaaaatgagtACGTAG
TATCTAGGAGACGGGAACAGGTGGTGAGCCACAATCACTGGTTGCCAAGA
TACCATGtatgaaaattatatatttatAAACTGATGCAATTCAAAGAATA
ATGTTACGTTTTTACAAAAACCATTCTTTCTTTCttagatattttgaaat
tgtattcaCTCTAACATGCTATTGAGCACTGTGTTAATGCC
Run BLAST on NCBI

transcript from alignment at sc0000082:483435..503101+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008128 ID=TCONS_00008128|Name=TCONS_00008128|organism=Clytia hemisphaerica|type=transcript|length=19667bp|location=Sequence derived from alignment at sc0000082:483435..503101+ (Clytia hemisphaerica)
TCTTAGTATTGCTACGGGATTATTATTTAGCTATAACACTGGGATCTCAC
GCTCCTCATTGTCCCgactgtttatcaaattttcttACTGGAAGAGCTGA
GCttctcaagtaaaaaaaaccaACATCATCAATCAGGAATTGTGTAGGTa
tactttttgttattttgatttgaaatatgACAATAATTAGCTAAACTAAA
ACAGAAAACTCCTGAAAACTCCCTGACAGTTACATCATCAATATGCCTTG
TTTAAAAGTAATCACGAaaaaaaggacgcgaaaaaaaaaaagacataagt
gtgagaacagagtaatcaaactcgttagaaaaagtaccattaaaAGTcct
aaaaaatcaacctgaataaatgcaatcgaaattccaaaGAACTTcgtaat
tccccaaacaacattacattactatgtcaaactacatattttacctaccc
caaatatttaggaggctgagttttaaacgaatcgtcaagttgaaacgaaa
gattaatgtatcaaggtctgttttatttaccccctggtgacttaacaaaa
gagacttaactcgatgttacaatccaattattgaaagtttgtagacatac
gttctctgattgcgcaattttcatattgacattttcaaggcattttgatg
taactgcctgaCCCCCGCCCCCGGGCGCCAGGGGCATAGACTATGCCATC
ATAGTGTTGGAAGACAGttttagaaaaggttagaaaaagtTATCTAAATA
AAATGGGATTAAAGGAAGCTAGTGAAACAATGAGAAGGAGGCTTGAAATG
ATTGATGTTGGTAGTAACTTGGAAGGAAGAGAACATGCAGACTATGTGAG
GAGAAAGAAAGCACTGAACACATGATAGCATGTAGGAGTACAACAGGCAG
AACAGCTCCTGCCGAATTGACAGTAGCATGCTTGAAGGAAACGGACGATC
TTAACATCATTAGACAAACAAATCAATTTCTAAATCTCCAAATAGAAAAA
AGAGACAAAGAGGAAAAACTAAAAGAAACATTCTTGTAAacaaatcaaaa
ggaaaaaaaagaaaagaaacaaatgTCTTGCACCTTATACGTGATTTAGC
GGAAGAAGGTGCTTGTTGATGTAAAACTGTCAACAAAGAGGACGATTATA
AGATTCAAGATTCAAGATTCaagttagtggaagtacttcgtttcgaatag
accttttcgtctttccatccgccatattgaattgtatgcaaaaattatgg
tggccgaattgctgtggtgaaattaccttagaaagtatgcaaaacatatg
caaaaagaaagtattaatgtaaaacttacatgcataattggcattatatt
aaagtgtaatcttgtagaagaaagattaaatttgcttcttttgaaaacta
gaaataatcaaattcgctcgaatatcttagaacaagcacttcaaaaaacc
ataacattagacataaactcaagctgaaaaagcACCCGCGAAGGACAGAc
agctgacggtaaattattctcctgggaatagaaccgtcagacgatcaaat
caaaacattgatttgaacccgctgaatgtgtgacgtcataattactgctt
tcagtttgcgtgttttgagtCAATGGCCATCTCAGCTCTGATCCAAACAT
TGTTGCCAATGGCTTTCAATGACTTTTTTACATCTATTGCAGATACTGTC
CGTTCCAAAATTGGTCCAACCAATCGTCACTTCTCTCACTATCTCAAAAA
TCGCATTAGGAAAAAAACTTGGAGTTGAACGTTGTTCTCCAATTCTAGCC
ACTCTTTTTAATTCAACAATTAATACTGGGGTCTTTCCCCATGAACTTAA
GCTTGCAGATATCATTCCATGTCATAAAAAAGATAGCGCCTTGGAAAAGT
CAAACTATAGACACATAAGCTTGTTACCTACAATATCTAAAGTCTTTGAA
AGACTCATGGTAAATCAAATGCTGCCTTTCTTAGACACTTTCCTCTCGAA
ATTTCTTTGTGGATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AAGGCTCAGTATTAGGACCTAttttatttaatgttttcattaaTGATATG
TTTATCATATTTAATGAAGATGACATCTGTAACTTTGCTGAAGATAACAC
TCTTTCGGAGGCAGGAAAAACGCTTGAAATCGTTTACACTATGCTCTATC
CAAAAAAGCAAAACTAATGTTAGATTGGTATGCACAAAATTCATTGGTGG
CAAACTCAGCAAAGTTTCAAGTCATCTTCCCAGGTAGTCCAAAATGTAAT
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NNNNNNNNNNNNNNNNNNNNNNNNNTGATTTGCAAAAGGCTTTCGATACT
GTTGATCATTCTATTCTAATTTCAAAACTCGACCACTATGGGGTTAGAGG
AAAGGCTAATGACTGGTTCAGATCGTATTTATCTAACAGATCCCAGTTTG
TCTCTGTTCTAGGACCTCTCTTATTTTTAATCTATATTAATGATCTTCAC
AATGCAATCTTTTCaagtgaaacttttcatttcGCTGATGATAcccatat
tttacattttaatgatgAGTCAATCGTGACCTAAGATCCCTCCAAACTTG
GCTCAAAGGCAATAAAATATCCCTTAATGCtggaaaaacagaatttttaa
ttttcagacactgtcgaaaaattcttccttttgtcttttttcttaaaatt
ggaggtaagaaaatttttcaaagttcaaatatCAAATAGCTTGGCGTTTT
GATTGACATGCACCTCAACTGGAAAGCCCACACCACATCTTTATCAGCTA
AACTTGCCAGAGCAAATGGTATTATATCTAAGCTCAGGCACTATGTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNacttatttaattgtttctttacagaaaaatgttctttatg
atgatgcccaaaacttagcatcgtttgatttccaaaaaaatcatcctttg
aatccggaactccttataaatcgccggaacagcctaaaaaccggcgtaaa
acggttttccttcattttttcaacttatactcgacagattttcatgattt
cttgcacaatgatgtaaaatggcaatgcccaaaattatacattacttcca
ttaaattctaattattcgttttataaataggtaggtccattaaagtatta
cttNCAATGcccaaaattatacattacttccattaaattctaattattcg
ttttataaataggtaggcccattaaagtattacttgtttaaCTTTATTCA
GCTCGATGCTGAAGACGAAAACACTCAAAGTACCAGAGGAGCATGTTTGA
AACTACTTTTTGTTCCCTCCTACAACACCATTACCTNNNNNNNNNNNNNN
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taaaaaaaattcttaaaaaatataaatatttataaataatttaCAAAGTG
TTATAAACGCAATCTGTACTTAGGTGGCCCCATCTTTTTGATTAGCTAGA
CTGTAAGGCGGTCTCcctccatatattttttgtgcatatcatcacttgta
tcttttttgtagtgttaaatggtaaataaatacttacttacttaccggtt
agtgtaaaacgcaggtcacaggtcgcaggtcacaggtcacaggtcagtga
tgacaggttaactctaatcaatgtcattgcagaggagaatgtttggaaaa
cacaaagaattatcaaaaacataattctcaagcaatttcatccatataaa
accttttcaaacatcaaaatttaaccatgtgcttttatcgatctttcgca
gtttgcgccgtgtataacgcagaccagaaaatatttgaaaccatattata
cgtataacaggtatattacatattgtaatgtttgtaatgttatatgatgg
tttacatataataaaacccCGGAGGGGGGTCTCTACCTTCGCAGAGAACT
CACGaccttctgattggtgtaattttatatccagccataattgttatcat
cacattcggcatgctgaatatttttggtgtttttctcttgtaagatatga
tattttgtaattctgtcaatatttttgtcaaaaattgtcattaagtcatt
aaaatgacaattgaataattaattagtttcatccttctaaaaccactctc
ttagggacctcacaaacttctgattggtgccgttttatatccattcacac
tatctacatcacattttgtataataaatatttttcgtgcttttgtcttgt
taggcatcatattttatgattttgtcattatttttgtaactaattagtgt
cactatgtcaaaattcaattggcattttataatatctaaataacatgtat
tacttttttgtaatttaatgcgctatgtattgatgttatgttatgtatat
gttatgatattttttttttccggtctgcactttgttgacctgtgacctgt
gacctgcgacctgtgacctgcgttttacactaaccgcttacttacttact
tttgaaagtttgatgtgtgtactccgtcttggtggaattctttaatggca
tgaaaacagaatatgcaatgtctttaagaacaaatttatgAAAGGcgttt
gttgttctgtaaatatttctttttggattaagaaattccatcttttattg
ttttaatgattataatatttctttataagatgcttttttgtctttttaat
ctttgtgtaaacttgcatatgttttgcatattttccaactaaatCCAACC
ACGGCTTTTTCGTTCCTCTATTTTTGCATACAATTCAAGATGGCGGATgg
aaaggcaaaaaggtctattgtgaagcgtctttacgtcacacaaaacaaaa
gaaaatagcaacaGAACAAACACAACCATGGGGGATCGCGATTTTATgga
aatgggaatcctcatatATCGAAATAAAGCATCTtcagaaaatttcattc
ttcctcataaatgcgaaaatgaaaaacaaagaagctttcgttttctgatc
gtctttttaatctgccatgaagtgttataaaattccttatagaaaGACAC
ATTCTCCTACTACGAAGAAGAGGGGCTTTAAAAAAATGAcgtagaaaaaa
gttgttaaaaagtatgtcattttatcttcacaattttgtgaactACGTCA
CAAGCACGgagcgctgacttttagttttaatgaaTTGTTCCCACTCGTTT
GGTTTCTATAATGaaaagaaagtcgttattgtgaactttgaacatgctta
aaatcgaggtacttccactaaactgtaagagcaaCGGATCTTATTTTGGG
ACCAAATCAAATAAATGGCTTTGAACCCaggaaaatcattaaaaaacaaa
cttcttaaGACTCCAGAAGACTTTCAGCTAGGACCCTAGGACTTAGGAAC
ATTTGGTGAGTTCCTGTACGTGgctgcaatcaaaaaaatcataaccacac
tcataaaaaaatcacgtttgcgtctttttttacgtttttcttgcctagac
gatatagcaaacatagtaagtataagcagactgtgccttCAAACTGTGCC
TGTGCATGATGTAACTTGCGCGGCAACAAAAtcgccttctgttggctgat
catattgggcgttttggcgttaccaccctcaaagCAGCGGGTGCCTTTAT
TATCTCACAGTCACAAcactctgtccaccattttaaatgagttaacaata
gatccaaaagggtgCCCTCATCGAGGAAGATCATTCACTTTGGTATCCGG
TTTTgggaagtagtaatgttttcgattgttttctatggaaaatGGTACCG
TCTGTAGGGATTCACGGAGTGGGGATGAATAAATTTGAAGCGGTCACAAG
TGTTTGTAACATGTGTGATGataatgttcaaactgaaaattgaaattgaa
aaaatactaaataTTGATCACAAGGAAAAAGCTTAAGTCTAAANNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGCTGAAAAAACTTACCAGC
TTGCCTGAAGTGTGAGGCTGGAATAATCCAGGCAGTGGTGTGATAAAAGT
TAGTAAACTAAACTCATATTGATGAGAGAAAAGCTTATAGGTTATGTGAC
TAAGTCTTGTTTGAAGTTGACTTAGTAAAATTTGATGTTCACTCCATGAA
ATCTCTTGTTGAACTgatgtgaaaatgaaagtccttaaattaacataaat
aaacaaattaGAATCCAAAATGGTGAACACTGAGaacagaaaaacactga
aaatgcagaaaacatgagaaaaactgaaaaaccgAGANNNNNNNNNNNNN
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NNNNNNNNNNNNNNNgtcaactgctctaacttgggactatctgacaaaac
atgggacggcaattcggccaccatttcactgaacctcaaaagtcatttga
tttgatttggcaaaatgatggagcgtttgacgtcactcgcgcgcaagtta
cacactcattatttgttaatcccatcgggcgataggcggttaggcggtga
gagttctctaattctccaatcaggtcattttgaatgaaaacagaagttaa
aaagggcgcgctatcagtgaaaattaacttgacatgttatgacagaaagt
atgattgataaacttggtggagttatcaaaacaaatttgttgtcaaagag
ttACATAGTTACATCAATTTcgacaatttcttttggaaaaaatgacccTG
AAAGTTTTGACTGTCAggtctttttggacctacctcggaggttcTTTAAA
TTAACCGTCCGTCTGATGcaagcttttctcaggattggcacatttgattt
ttcaataaaactgatgGTTCTTTTTTCACGATCTTTTCCATTATTGCCTT
AAACTACAGTCGACTTTCAATAAATCCAACCTCCTCAAATTGATTATCTC
CATAAACTCGAACGATTTTTCCGGTCTCTTGAGGAGATTCTTAGGCTATT
CTGACTCTCTGTAACTCAAATTTCTGTAACTCGAACAATTACTGATTATC
CCCTTGGCGTTCCAGTACTCGACTATATTACACTTCCCTACTTGCTCTAA
ctttaatcattaggtaggtccaatcagATGGAAGCTATTTTTACAAGAAG
TTATGTCatctaaatttcaaaatgttataATCTTTTATCAGCAAATTTCC
AGATATGAATCCTGACGTTTTTCTTAATAGTGGTGTCCTATCTTTGAGGA
TGCCAACTTCAGCTAACTAATAGAAGAATGTTCCTTCCCTGACTATCTGG
AAATAATTTTATGCTAGGAAATGACCAAAAATTCATTATATTCTATAGTC
ATTTTATACCAGAATGATCATttaaaacttcttcaaatttctttttatag
aTATTTAAAGATGAACAGATAAACCATGGTATGTAAAgcgttttttaaat
ttttgtttttcaaaatgactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtagttcc
atccttctaaaaccactctcttagggtccttgcaagcttctgtttggtgc
caaattatatccattcacaccatccacatcacattctgtataataaatat
tttttgtgcttttgtcttgctaggcatcatattttatgattttgtcatta
tttttgtaagtaagtgtcactatgtcaaaataggttgttNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTATTTTT
ACAAGAAGTTATGTCatctaaatttcaaaatgttataATCTTTTATCCGC
AAATTTCCAGATATGAATCCTGACGTTTTTCTTAATAGTGGTGTCCTATC
TTTGAGGATGCCAACTTCAGCTAACTAATAGAAGAATGTTCCTTCCCTGA
CTATCtggaaatataattttatgCTAGGAAATGACCAAAAATTCATTATA
TTCTATAGTCATTTTATACAAGAATGATCATttaaaacttcttcaaattt
ctttttatagaTATTTAAAGATGAACAGATAAACCATGGTATGTAAAgcg
ttttttaaatttttgtttttcaaaatgactGCTGCTGATTTTTGACAAGG
ATTTCAAAAATCATGTTGTAATTATGTTGAATCAGATTGAAACCTAAAat
tgtaaaagattttcaaaaaattatatacCTGATTTAAAGTCTCTTATACG
ATATTTCAAGAATCAACGAAGTAAGTTATGAACTAAAAGAACATTGTGAT
ggatttatgaaaattttattttgaggCTAAAAGAAGTTATACCCAAACTC
TTGTATTATGATGTCATAAACATTACCTAACATTACATCATAAATCTTTC
AATTTGAAATCTTAATCTACATCATAATCCACTAAGTTCCAGTGAATGAA
ACTGCTTCATTTTAATATTTGACAAGCCACTATCCATTTGAGTCCTAGGT
TCGACTTCTCCTTTCAAGATAAATCGATAAGATTTTTCAAGGTGATATGG
GATTGATTTATCAggaatttttcactttctaaATTGACCTAGATTCAAAG
ACTTCTGTGGATACGATAAGCTTCCCTTACTAGCTGTATCACCTATCatc
cttttttcttcaaaataccCACCAGCTTAAATGTTCCAAAGCAACAATAC
CCTTTTCAGGTTAAAACCCACCTTGTGTAAATTCAAAACAAGGCGTTTTA
ATAAGATGACATGAAAATTTCCATCCTCATCCTGGTCCAGATTTAACTGT
TTTGAGTTGAACCTCTTGATTTGAACCATTCTGTATTGTTTCTTGTTAGG
GAGCAAACACTTCATCGCTTGAACAGGACATTGGTCCGGTCAATGAACAT
TTCTTTGGTTTGATAAATGTAAGTCCTCTTATTGATATGTTTAAAGTAGA
GTCTTGCTTTCTTTTCTTGAAACAACCCACTTGTATCTATCACTGAATAA
AATTTCTGAActattaatttttgattttagtttGGAAACACTTGTTACTG
CAATTCAGTGCTGCAAGCCCTCTTCTTCTGCCGTCCGTTTCGTGAGAAGG
TTTTAGCTTACAAGCCGCTGAGTAAACGCAAGGAGAACCTTCTGACTTGT
TTGGCTGACTTGTTCAATAACATTGCCACTCAAAAGAAGAAAACTGGCGT
TATTGCACCCAAGAAATTTGTAACCCGACTACGAAAAGAAAATGGTAATC
TTCAATTCATTTCAGTCAACATACATTTAAAacatataagaaccagtaaa
ttttgactGTGACTCGCCTATTATAACACATTTCCACCACTTTGATTCCT
CTTGGCAAGTGGcgaaatttactcattttcccCTAACGGAATTATTTTAA
GGAAATGTTCTTTAGTTCTTAGTTACGTAATCCTGTCATATACAAAATGG
ATTTGACCTTTCTTTCAGAGCTCTTCGACAATTACATGCAACAAGATGCA
CATGAATTCTTGAATTACCTTCTCAACACCATCGCTGAAATATTACAAGG
TCCGTCTTTTATTAATTTGGCATGGGAAAATTTGCTAAGGGTCAAaatgt
tttctgaatttttgacTTCTGTGAAACGTACTTCACCCTTATAGAAGAGC
TAAGAATTCCATGTCTCAGAATAAGAACCCAACTCTCTTTACACGCTCCA
CCCTAATCCAACGATCCAATCCTTCAAAGAAACCTCCAACCCCTTcgtct
tcttttcttctttacttTACCCTCTAGATAGGGATTCATGCTTAGCTCGC
TTTTTTCCAGGTGAGAAGCAGCGTGAAAAGGAGAAGGATCGCGAAAGAAT
GGGTAGCGTGAGTAGTGTGAGCAGTAAAACAAGCGCTAGCTCAGGTTATT
CATCAGCTACCATGCACTCGACATTTAAGACACCTCCTGAACCGACTTGG
GTGCATGATATCTTTGAAGGGACGCTCACCAATGAAACAAGATGTCTTTG
CTGTGAAACCGTATGttgagagtttttttttttaacacgtGTCTAAGTAC
GTTATAATTGAAAACTTGGAATACAAATGTTGACACAcggataaaaaata
aataagttttttttctccattagGTGAGCAGCAAAGATGAATCGTTTTTG
GATATCTCAGTTGATGTAGAGCAAAACACCTCCATTACATACTGTCTCAA
GTTTGTATTCCATTCTATTCATTCGTGAAATCCTCAGAAATCCTTAAACC
TTCGGGAATGGATGCATAATATGCACATTAAAAGACTACAATTTGTCATA
AAAATTAGATTTGCCTCTTGCATTCTTAAATTAAATTTATCCCCGGATCG
AATGGCATGCATCtgctattaaaaaaaaaatatttcttttcagaaaCTTT
TCGTGCACAGAGACGCTGTGTAGCGAACAGAAATATTTTTGCGAAACTTG
TGGAAGCAAACAAGAGGCTCAAAAGAGGTATAGAGATTTGTCATTCACTA
TTTGGCGCTGCCGATTTTTTGAGAAGAAGTTTACCACAACTAATATGTAT
ACTCCATGGTTAAAAAGATGAACTTTCTGCCCACCACTCTTTCTTATTCC
ATTCACAGGATGATGGTGAAAAAGTTGCCACAAATTCTTGCGTTGCATTT
GAAACGATTCAAATATGTGGAACAGCAACAAAGATACACAAAACTCTCAC
ATCGGGTCACTTTCCCATTGCAACTACGTCTCTTCAACACTGTAAGTCTA
CTGTGATTGtctgattaaatttttttgttctaGAAACGTTGGTCACTTGT
CTGACTTTTTCCCCTCGACAAGCTTCTGCAGAACTTTAAAACCGAAGcgt
ttattttatttcaatgtttttttcgtttttttagtCGGACGATGCAATCA
ACCACGATCGTTTGTATGATTTGGTGGCCGTCGTTGTGCACTGTGGAAGG
TTTGTTCATTCTGAATAAATATTGGGGAGAAGAATGCCCAAAGACCTTCT
AACTAGGCGATGTCAAACGAACACTTTCCAACTGattcgattactgttcg
attatATCTATTGTTCGATTGTGTTCGGTTAATTCGATAGAATTCGATTG
TTCGATAGTGTTTGATGAatgattaagttcgattagttcgattgttcgtt
TGACATCGCCTGGATCTAAACACCATGCTCATTACGCCTTAACAgcttac
actcttttttttataagcatacgggaaaatcgggtcgaggctcattttca
gccttaatttatgcttatttatatgctGAGACTtaaatttgttgattttc
tttgggttcatggaaatttcgaatttttaagtcGGAACATTGATTTGGCT
CAAAGAATGAAAGTTTTTGGTGAAAATCTTTGGTCCAAGAAAGCACAAAC
AGTTTTAAAAGCAACCTTAAAAAGGTCAGCGGTTTAGAAAAGCTGCACAC
ATTTTTGCATTTCACcttggaggtatgcttagcactatgcttattttttt
tgccGAATTTGAGCCTAAGTAGCTTATAAACAATAAGAGTGTATCTCCAC
AAGAACGCTAGAGTTTTTGTCTACTTTTGACTCGATCAATCTATGTTGTA
AAATTGTAATTCAATCCTTTGGAAACAAGTAGACACAAAGGAGTGATTGC
AAAAAGTCAGATTGTTTTCAATGTTAGCGGAATTCAGTTTAAAGTAACGA
TAGCCTTAATTTCTTTTACAGTGGTCCAAATCGTGGTCATTACATAGCAA
TCGTTAAAAGTCATGGCTTCTGGCTACTTTTTGATGACGACATTGTGGAA
GTAAGCAATGACTCTTTCATTCGAATCTCTTATTGTTGTTAGTGATTTTT
TACTGTAGCGTTAAATTCATGTGTACAGTtgaccctctctaattcgatct
tcaagtgaCCAAAAATTCTCATCGAATCggagaaagattcaaattataga
gagTAATTTAAGTCACTTGTCAGCTGAGGGAACCAATATTTcagaattat
agaaagattcaaatagaagaggttcgaattagagggaGTTACCTATGTTT
GACCTCTCTGAGTTTTTTGCATCGACGACAAGATTATCTTTTAATTATGG
AACGTTAGTAGATCTGTCTAAACTAAATGGTTAAGCTCAGGACAAAAGTA
GGCTGGATTGGTGGTCTGCGAATGTTTTTTGGTAGCGCTGCATTTGCATG
ACTTCAGGTACCCACAGTAGCTTTCAATgcaaatttttcttaatttcagA
AAATCGAATCACATTCATTAGAGGACTTTTTCGGGCTGACCACGGATGTA
CAAAAGAATTCCGAATGTGGATATATTTTGTTCTATGAATCACGGAAAGT
GTGAACACAGATGCATAAACATTCTTGCACAGCGCTAGTCGCTACATTTA
CTAAAGCTCCATGTGAAAGCCTGGAAATGAATGTACAATACAAACTTGAT
GTGTGATGACTGTCCACACTGAAAGAAATTATGATTGAAACCGATGAGGG
ATTTGAAATGAATTCCGAAGAGAATGGAATCAAAGATCGAAAACAattca
ataaaaacttttctctGCTTTTGTAAAGTCTCTTTTTAATTCAGTAAAAC
AATTCGAGCTTTCGTAGGTTcgcacgcttttttataaaaataatttcaga
caAAACCTAACGGCAAATTCGGGCAATTGTGGCTTCATATTTCAAGAGAT
GACAGAGAGAATAATGacctgttcttataaaaaagcgtggaCTTTCAAAC
attgtaaataaaaaatgagtACGTAGTATCTAGGAGACGGGAACAGGTGG
TGAGCCACAATCACTGGTTGCCAAGATACCATGtatgaaaattatatatt
tatAAACTGATGCAATTCAAAGAATAATGTTACGTTTTTACAAAAACCAT
TCTTTCTTTCttagatattttgaaattgtattcaCTCTAACATGCTATTG
AGCACTGTGTTAATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004581XLOC_004581Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008128-exon-sc0000082-1491911889:483435..483577TCONS_00008128-exon-sc0000082-1491911889:483435..483577Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1510915933:483435..483577TCONS_00008128-exon-sc0000082-1510915933:483435..483577Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1575043694:483435..483577TCONS_00008128-exon-sc0000082-1575043694:483435..483577Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1491911889:498195..498222TCONS_00008128-exon-sc0000082-1491911889:498195..498222Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1510915933:498195..498222TCONS_00008128-exon-sc0000082-1510915933:498195..498222Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1575043694:498195..498222TCONS_00008128-exon-sc0000082-1575043694:498195..498222Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1491911889:498984..499052TCONS_00008128-exon-sc0000082-1491911889:498984..499052Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1510915933:498984..499052TCONS_00008128-exon-sc0000082-1510915933:498984..499052Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1575043694:498984..499052TCONS_00008128-exon-sc0000082-1575043694:498984..499052Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1491911889:499165..499378TCONS_00008128-exon-sc0000082-1491911889:499165..499378Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1510915933:499165..499378TCONS_00008128-exon-sc0000082-1510915933:499165..499378Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1575043694:499165..499378TCONS_00008128-exon-sc0000082-1575043694:499165..499378Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1491911889:499603..499683TCONS_00008128-exon-sc0000082-1491911889:499603..499683Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1510915933:499603..499683TCONS_00008128-exon-sc0000082-1510915933:499603..499683Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1575043694:499603..499683TCONS_00008128-exon-sc0000082-1575043694:499603..499683Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1491911889:499945..500144TCONS_00008128-exon-sc0000082-1491911889:499945..500144Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1510915933:499945..500144TCONS_00008128-exon-sc0000082-1510915933:499945..500144Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1575043694:499945..500144TCONS_00008128-exon-sc0000082-1575043694:499945..500144Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1491911889:500258..500334TCONS_00008128-exon-sc0000082-1491911889:500258..500334Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1510915933:500258..500334TCONS_00008128-exon-sc0000082-1510915933:500258..500334Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1575043694:500258..500334TCONS_00008128-exon-sc0000082-1575043694:500258..500334Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1491911889:500528..500611TCONS_00008128-exon-sc0000082-1491911889:500528..500611Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1510915933:500528..500611TCONS_00008128-exon-sc0000082-1510915933:500528..500611Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1575043694:500528..500611TCONS_00008128-exon-sc0000082-1575043694:500528..500611Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1491911889:500743..500875TCONS_00008128-exon-sc0000082-1491911889:500743..500875Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1510915933:500743..500875TCONS_00008128-exon-sc0000082-1510915933:500743..500875Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1575043694:500743..500875TCONS_00008128-exon-sc0000082-1575043694:500743..500875Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1491911889:501019..501083TCONS_00008128-exon-sc0000082-1491911889:501019..501083Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1510915933:501019..501083TCONS_00008128-exon-sc0000082-1510915933:501019..501083Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1575043694:501019..501083TCONS_00008128-exon-sc0000082-1575043694:501019..501083Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1491911889:501856..501934TCONS_00008128-exon-sc0000082-1491911889:501856..501934Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1510915933:501856..501934TCONS_00008128-exon-sc0000082-1510915933:501856..501934Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1575043694:501856..501934TCONS_00008128-exon-sc0000082-1575043694:501856..501934Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1491911889:502384..503101TCONS_00008128-exon-sc0000082-1491911889:502384..503101Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1510915933:502384..503101TCONS_00008128-exon-sc0000082-1510915933:502384..503101Clytia hemisphaericaexon
TCONS_00008128-exon-sc0000082-1575043694:502384..503101TCONS_00008128-exon-sc0000082-1575043694:502384..503101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:483435..503101 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.2111	17.0615	31.843	21.5685	30.4312	22.6922	31.7247	25.4395	9.87673	8.38107	29.9452	10.5269	14.2131	15.8023	23.796	25.9174	35.535	28.1623	20.4217	27.3466	30.8107	30.9891	32.4663	8.28164	39.3217	41.5091	19.1746	12.1227	10.3574	16.9683
Blast
[Close]
BLAST of TCONS_00008128 vs. Swiss-Prot (Human)
Match: UBP46 (Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46 PE=1 SV=1)

HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0
Identity = 272/372 (73.12%), Postives = 316/372 (84.95%), Query Frame = 1 
Query:  169 MGANTSSLEQDIGP----VNEHFFGLINFGNTCYCNSVLQALFFCRPFREKVLAYKPLSKRKENLLTCLADLFNNIATQKKKTGVIAPKKFVTRLRKENELFDNYMQQDAHEFLNYLLNTIAEILQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFKTPPEPTWVHDIFEGTLTNETRCLCCETVSSKDESFLDISVDVEQNTSITYCLKNFSCTETLCSEQKYFCETCGSKQEAQKRMMVKKLPQILALHLKRFKYVEQQQRYTKLSHRVTFPLQLRLFNTSDDAINHDRLYDLVAVVVHCGSGPNRGHYIAIVKSHGFWLLFDDDIVEKIESHSLEDFFGLTTDVQKNSECGYILFYESRK 1272
            MG N S+LE+DIGP    +NEH+FGL+NFGNTCYCNSVLQAL+FCRPFRE VLAYK   K+KENLLTCLADLF++IATQKKK GVI PKKF++RLRKEN+LFDNYMQQDAHEFLNYLLNTIA+ILQ EK++EK+  + + G+++  +                     PE TWVH+IF+GTLTNETRCL CETVSSKDE FLD+SVDVEQNTSIT+CL++FS TETLCSEQKY+CETC SKQEAQKRM VKKLP ILALHLKRFKY+EQ  RYTKLS+RV FPL+LRLFNTS DA+N DR+YDLVAVVVHCGSGPNRGHYI IVKSHGFWLLFDDDIVEKI++ ++E+F+GLT+D+ KNSE GYILFY+SR+
Sbjct:   12 MGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAE-----------------NNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQSRE 366
The following BLAST results are available for this feature:
BLAST of TCONS_00008128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP460.000e+073.12Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo s... [more]
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