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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008126 ID=TCONS_00008126|Name=TCONS_00008126|organism=Clytia hemisphaerica|type=transcript|length=907bp
GTGGCGGTATTTCGATCAAACCTAGTAGTGGGATGGGTTTGATGCGGGGA
GACATGGGTGGAGCCGCTTGCGTTTTGGCTACGCTGCACATCATTGCAAA
ATTGAAGCTACCTGTCAATTTATCAGTGCTGGTTCCCATGGCAGAAAATA
TGCCGTCTGATCGAGCAGCCAAACCAGGAGATGTTTTTACTGCACTCAAT
GGAAAGACCGTCGAGGTCGATAACACAGATGCTGAAGGACGAATGATCCT
GGCGGACGCTTTATGCTACGCGGACGAATTTCAACCGTCTACAATAATCG
ATGTCGCTACACTTACAGGTGCAATCGACGTGGCGTTAGGTGGGGCAGCC
GCTGGAGCTTACACAACGTGTAACAACTTATGGCAGAACATGGAACAGGC
CAGTTACACGACAGGCGATCGTTTTTGGAGAATGCCTTTGTACAAACATT
ACACCAAACAAATGAAATGTAGCTTGACTGCTGATCTACGAAACACGCAG
AAAAAAGCACGTTCCGCTGGGTCCGCAACTGCTGCCGCTTTTTTAAAGGA
ATTTGTAACGATTAAGAGCTGGGCTCATCTAGATATTGCTGGCGTGATGG
ATAATTCCGGAGGGGAATTACCGTATCTCAACTCCGGAATGTCAGgTCGT
CCGACAAGAACTTTGGTTGAAACCGTCCGAAATATTTTTACGtagaaaaa
agaaacattatttttatttgacaaGTTTTTATAGTTTAGATCACACATAa
ctttagaatttatttttgtatttttgatggAAACATTTACCAATtacaaa
aaactcattttttcaatgcaacGATTTCATCCAAGCCATACGCCCCTCTT
TTATAATTGAGATAATTCTCAAGCtgcttcaaatttttttgtaaaacccA
TACTTAA Run BLAST on NCBI transcript from alignment at sc0000082:459118..467986+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008126 ID=TCONS_00008126|Name=TCONS_00008126|organism=Clytia hemisphaerica|type=transcript|length=8869bp|location=Sequence derived from alignment at sc0000082:459118..467986+ (Clytia hemisphaerica)
GTGGCGGTATTTCGATCAAACCTAGTAGTGGGATGGGTTTGATGCGGGGA
GACATGGGTGGAGCCGCTTGCGTTTTGGCTACGCTGCACATCATTGCAAA
ATTGAAGCTACCTGTCAATTTATCAGTGCTGGTTCCCATGGCAGAAAATA
TGCCGTCTGATCGAGCAGCCAAACCAGGAGATGTTTTTACTGCACTCAAT
GGAAAGACCGTCGAGGTTGGTTCTATTTTACTATCCGAGGACGCTGGTTA
GAAAGATATTCGTGTTATGAGCTTTTGTACCATATCTTGTACATATCCAT
TCTTTCAAAGATGTCAAATAAATGGGCCccttgtgttttttgtttgctgt
ttttttttactctcGCAGCAGAACCCCTTATAACATTGATAAATTTCTGA
AAACATTTTTATCTGTCAAAAAAATCcattattttgctccaaaatcTGAT
AATGACTGTTCGGATAATAATCCCCCTCGCCTTGTAATCAGCATCTCCCC
ATTCAGCAAATTTCAAACTCCCTTTGAACATTAATCGATCTCGCCCTGAC
AAACGACAAGTCGAAAATCTCCCACGAAACCGTAATTTTCCCTTATCACT
AAGTGATCATGATATGATTGGAGTTGTTCGGAAACGTAACCATCAAAGAT
ATGAACCCAAAACCATCAAATGCCGAAACTTTTCGCGGTACAATCCTGAT
GCTATGAACAACGAACTTCGCCAAGTCGATTGGAATCTTGTATATCAACA
GTCCGAACCAAATGCTGCTTGGAAATACTTCAAACAAATCGTGACTAACT
CCTTCAATCGCCATGCCCCTGAAATAACAAAACGCATCAAAGGTCGCCCA
TGTCCATGGCTCACCCAAGAAATCCGAGCACACCTGAACGATCGTGACAA
AGCTGATCGAAAAGCAAGGCGAACGAAAGACGAAGGTGATCGAAATATCT
ATCGTCGTAAAAAGAACCGATGCACCAATCTCATCAAACAGGCGAAAAAC
AATTACCATAAAGAAATCCTCACCGAAAACCtcaaaaatagtaaaaagtT
CTGGGGTcacatcaaaaaacttttaccaTCTTCAAACGTAAAATCAAAAC
CAACTGACGTTCTCAAAGACGGTGACGCAACCGCTACTAGCCCAAAAGAC
AAAGCCGATATGTTTTGTAATTATTACGCCAAAGTGGCACagaatctaaa
gaaaaaagcaATGCCACTAATAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAT
TTTTGGATCTAGTGAGGCTTTGGTTTTCACTCTCGTTGCTACATTTAACT
ATATCCCTAATATTCTGTATCAATTTGTTTACAACACCACAACACTACGC
AATGATCTTTTACCAGAGATAGTAAAGATAGGCGTTTAGGATATTTTATC
TAATATTTATTTccgtcttattttttttttttttttaaacattttgaata
tGATAATTTCACTGTTTTTGGGTACTTTCTCCTTTTCAGAGTTTACACAT
TGCGTCACACTTTTCAGTATTAATATTCTCAGTATTACTGTATTAATAGA
CTTCACATGTATACTCTTAGTCTTGTTTACATTAATTTTAAGATAACCTT
TTGAAGTATCTATCGATCACAGCGTGGTTTTTCTGCGGGTATAACCTTTC
ATATTTAGTTNGATGTCAAATAAATGGGCCccttgtgttttttgtttgct
gtttttttttactctcGCAGCAGAACCCCTTATAACATTGATAAATTTCT
GAAAACACTTTTATCTGTCAAAAAAATCcattattttgctccaaaatcTG
ATAATGACTGTTCCGATAATAATCCCCCTCGCCTTGTAATCAGCATCTCC
CCATTCAGCAAATTTCAAACTCCCTTTCCGCTGTTTCTCAGGAACTTTGG
agtaataatcaaataaaaaatggcaaaaaaagagTCCATAAAAATTGTGT
CATTGTGTTTAGGTCGATAACACAGATGCTGAAGGACGAATGATCCTGGC
GGACGCTTTATGCTACGCGGACGAATTTCAACCGTCTACAATAATCGATG
TCGCTACACTTACAGGTAAGGGGAGGTAAAATTATTTGACCCTTGGGATC
TTCGCAACCATCACTTAACCCAACTTAGATATTCTTGATAAGATTGGTCT
CTAAAGCGTTTTCATTTTTGCTGTCCTTTTTGCTGTCCTTTTTTGCTTCA
TTTACAGTTTGTACAACTGAAAAACTTGATATTACTGCGTTGGATAAAAC
TGCCACCTTTCATCTTCAGGTGCAATCGACGTGGCGTTAGGTGGGGCAGC
CGCTGGAGCTTACACAACGTGTAACAACTTATGGCAGAACATGGAACAGG
TAACATCCGATTCCTGAAATTGATTTATATAAAAActtcctttttttgtt
tttcgaagCTTTTCTTCGAAACAGGTTTGAGTAGGTTTTCATCAAAATAC
TTGGCTTTCTTTCCAGGCCAGTTACACGACAGGCGATCGTTTTTGGAGAA
TGCCTTTGTACAAACATTACACCAAACAAATGAAATGTAGCTTGACTGCT
GATCTACGAAACACGCAGAAAAAAGCACGGTACGATACCTGAGGGATTTT
TTTCTCAGACTTCTTCTTTGGGAAGCTGTTTTTTACTTAACCAAAAGTCA
ATAATTAAGAAGCTTCGTGAATGAGATTTGTTCAAGTATTGATTGCTTAA
CAGTTCTTTAAGACATAGCTTTCTTTATTTATACCACTCAATTtaattgg
acctaccccggtggggtggaggtcctataaattcacctctgtccgttcgt
ccgtccgtctgttcgttaccaacttttctcgagattggctcattagtttt
ttctgattttttgcacaaagatgcataactataaaccctcgaatgtgacg
gagcccgattttcggggaaaaaattttttgggcaaatttgggccaaaaaa
cagctaaaaaacgggttttttgaactttgtaaaaaattggatcattaatt
ttttctgattttttgcatgaaagtaccatcataggtaaaagatggcttaa
gcagatttttgccaaaaaattttgttggctcaaaaaacgcatgtttatct
ataagaatcactattactaagcatacatcaatgttcttagtcaaattact
caatttttttatgacatagatgttttttttgctcgcgagggcttactttt
aaagaatatgtgtgtttagacatgaaattttggttgcttggcgtgttttt
atagaaaaactggccaaattcgatatttttttataagcacNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNccttatcaattacttaggtattagcttttc
tcgagattggctctttcattctttatgattttttgcacaaagatgcataa
ctacaaaccctcaaatgtgacagagctcgatttacgaaaaaaaacatttt
tgggcaaatttgggccaaaaaacggccaaaaaacgggttttttggacttt
gtgaaaaattggatcattaattttttctgattttttacatgaaagtaggg
taccatcataggtaaaagATGGCTCAAGCAGATTTTTGCAAAAAAAATTA
GTTGGCTCAATaaacgcatatttatctataaaaatcactattaataagca
tacatcaatgttcttagtcaaattactgaattttttttgtgagatagata
ttttttttactcgtgagggcttacttttaaagaatatgtgtgtttggaca
taaaattttggttgcttggcgtttttttatagaaaaactggccaaattcg
atatttttttataagcacattatcaattacttaggtattagctcttttcg
agattggctctttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTcgttctttatgattttttgcacaaagatgcataactataaaccctcaa
atgtgacggagctcgatttttggaagaaaaaaaaattgggtaagtttcag
ctaaaaaacggctaaaaaaaggttttttggatttgtgaaatattgaatca
ttgtttttttctgattttttgcatgaaagtaggtaaaagatggctcaagc
agatttttgtaaaaaaataatttttcagctcaaaaaacgcatctttatct
ataagaatcagtattaataagcatacatcaatgttcttagccaaattact
gaattttttgatgagatatgttttttttgctcacgaagtcttgaatataa
aagaatattttaagagcatgaaattttggtttctaaatgttttttttata
agaaataaacgactaattttaatatatcgtgactatttgtgttctgaatg
attgtttaatggtcacgctcacgtagttTTCagttatatatgtgttaaat
gcataaccaggtaggtccataaaagtatcacttgttattttattttttcc
ataGTTCCGCTGGGTCCGCAACTGCTGCCGCTTTTTTAAAGGTAAGAGTA
GTAATTCGAATCAAAAACTTCCATAAAATGGAAAGTTTATATTTACACTG
TTAAAGACTTCTttaagcgtacaaactttcgcgggcagattcttttgtga
ttttcgcgaattttagcccttttcgcgaaagtaaatgtctttgaaaattc
ttgaaagaGCCATTCGCATCCATtcagtttatgctcgcgaaaaaaatTCC
TGAcaagataagaaaaaaatcagtaatGCTTCTaaattaaagtaaaatta
agaataattctatttatactgagacgattaattagtctgagacgagcaat
ttagaaaTTGAGAattatggaggagtgtactttcGATTCATatttcaata
aataggatctcctccacagatcacattttacaaactattcgtctcagacg
atttttccgtctcGGTATAAATAGAACTATTTATGGCACCTTTCTGCCCG
TTAAAGCCTCACGAGTCAAAAAACAAAAGCTTCAATCCgattcaagaagt
atttgtccttCTAAGCCATTTCTTCGTGTGAAAATTGTTTGCGATTTGTT
TATGTTGTTCGTGAAAGTTTTTTagggaaaaaatgtttttcgataCTCCC
CTGTAGATTCAAAGCTTCCTAATCATATTTGATCCATATTTATTTGGATT
GATAAcgtgtctaattttccgtcccTCAGGAATTTGTGACGATAAAAAGT
TGGGCCCACCTCGACATGTCGAACGTCAAAGCGAACTCGAGTGGCGAATT
ATCTTATCTCGGTCCAGGCTTTTCAGGTCAGTCTAACCTCATGTTTTTCT
CTCATATTTTTGTAGGAATTTGTAACGATTAAGAGCTGGGCTCATCTAGA
TATTGCTGGCGTGATGGATAATTCCGGAGGGGAATTACCGTATCTCAACT
CCGGAATGTCAGGTTTGTCTGCTTTCTTTTCCTGTTTTTCAAAATGCATG
GACACGTAAATTCTCTTTCCGCCTTCGTCAGCTCtgaaaagctcaatttt
tggacctacctccgggtaccccggtggaggtcctttaaattaacccatgt
tcgtccgtccgtccgtccgttcgtctgttaccagcttttctcgggattgg
cttattacttttttctgtttttttggcacaatgatgcaaaatgatgattc
ctaaaaagtgacgggcaaatttgggctacaaactgcctaaaaatagggtt
ttttggactttgtgcaaaatcctgtcattacttttttcttattttttgta
caaagatggagggcaaaattctctaaagaatgactgaagtggtttttccc
ggaaaattcttattcgccttaaaagacggattttcgtattttggggaaat
tccctttaaccaaataaggaaatatagcttttctcaatgttgactcataa
tgtttttctgattttttgcacaatgatgcaaaatggcaatgcccaaaatg
tgacggagccagatttttaaggaaaatttttttgggcaaatttggggaaa
aaactgcttaaaaatagggttttttgggcctgaatggtttaagtgatttt
cgtatttggggaaattcctttttaccattttacattattcaacacacNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNaggtaggtccattcagcatgttgcttgtttggtttgattttttgga
aCTCTTTTGTTAGGGGGAGGCATTTGAGATCTGatattgattttcttatt
ttcttaggTCGTCCGACAAGAACTTTGGTTGAAACCGTCCGAAATATTTT
TACGtagaaaaaagaaacattatttttatttgacaaGTTTTTATAGTTTA
GATCACACATAactttagaatttatttttgtatttttgatggAAACATTT
ACCAATtacaaaaaactcattttttcaatgcaacGATTTCATCCAAGCCA
TACGCCCCTCTTTTATAATTGAGATAATTCTCAAGCtgcttcaaattttt
ttgtaaaacccATACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008126-exon-sc0000082-1491911889:459118..459332 | TCONS_00008126-exon-sc0000082-1491911889:459118..459332 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1510915933:459118..459332 | TCONS_00008126-exon-sc0000082-1510915933:459118..459332 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1575043694:459118..459332 | TCONS_00008126-exon-sc0000082-1575043694:459118..459332 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1491911889:463130..463232 | TCONS_00008126-exon-sc0000082-1491911889:463130..463232 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1510915933:463130..463232 | TCONS_00008126-exon-sc0000082-1510915933:463130..463232 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1575043694:463130..463232 | TCONS_00008126-exon-sc0000082-1575043694:463130..463232 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1491911889:463437..463516 | TCONS_00008126-exon-sc0000082-1491911889:463437..463516 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1510915933:463437..463516 | TCONS_00008126-exon-sc0000082-1510915933:463437..463516 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1575043694:463437..463516 | TCONS_00008126-exon-sc0000082-1575043694:463437..463516 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1491911889:463634..463746 | TCONS_00008126-exon-sc0000082-1491911889:463634..463746 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1510915933:463634..463746 | TCONS_00008126-exon-sc0000082-1510915933:463634..463746 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1575043694:463634..463746 | TCONS_00008126-exon-sc0000082-1575043694:463634..463746 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1491911889:465772..465808 | TCONS_00008126-exon-sc0000082-1491911889:465772..465808 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1510915933:465772..465808 | TCONS_00008126-exon-sc0000082-1510915933:465772..465808 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1575043694:465772..465808 | TCONS_00008126-exon-sc0000082-1575043694:465772..465808 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1491911889:466633..466729 | TCONS_00008126-exon-sc0000082-1491911889:466633..466729 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1510915933:466633..466729 | TCONS_00008126-exon-sc0000082-1510915933:466633..466729 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1575043694:466633..466729 | TCONS_00008126-exon-sc0000082-1575043694:466633..466729 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1491911889:467725..467986 | TCONS_00008126-exon-sc0000082-1491911889:467725..467986 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1510915933:467725..467986 | TCONS_00008126-exon-sc0000082-1510915933:467725..467986 | Clytia hemisphaerica | exon |
| TCONS_00008126-exon-sc0000082-1575043694:467725..467986 | TCONS_00008126-exon-sc0000082-1575043694:467725..467986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000082 | supercontig | sc0000082:459118..467986 + |
Blast
BLAST of TCONS_00008126 vs. Swiss-Prot (Human)
Match: AMPL (Cytosol aminopeptidase OS=Homo sapiens GN=LAP3 PE=1 SV=3) HSP 1 Score: 235.728 bits (600), Expect = 1.082e-72 Identity = 137/223 (61.43%), Postives = 164/223 (73.54%), Query Frame = 3
Query: 3 GGISIKPSSGMGLMRGDMGGAACVLATLHIIAKLKLPVNLSVLVPMAENMPSDRAAKPGDVFTALNGKTVEVDNTDAEGRMILADALCYADEFQPSTIIDVATLTXXXXXXXXXXXXXXYTTCNNLWQNMEQASYTTGDRFWRMPLYKHYTKQMKCSLTADLRNTQKKXXXXXXXXXXXFLKEFVTIKSWAHLDIAGVMDNSGGELPYLNSGMSGRPTRTLVE 671
GGISIK S+ M LMR DMGGAA + + + AKL LP+N+ L P+ ENMPS +A KPGDV A NGKT++VDNTDAEGR+ILADALCYA F P I++ ATLTGA+DVALG A G +T + LW + +AS TGDR WRMPL++HYT+Q+ AD+ N K RSAG+ TAAAFLKEFVT WAHLDIAGVM N E+PYL GM+GRPTRTL+E
Sbjct: 289 GGISIKASANMDLMRADMGGAATICSAIVSAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQLADVNNI-GKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNK-DEVPYLRKGMTGRPTRTLIE 509
The following BLAST results are available for this feature:
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